Wall clock time and date at job start Tue Mar 31 2020 11:26:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53008 * 109.46795 * 2 1 4 4 N 1.46508 * 109.46983 * 119.99486 * 2 1 3 5 5 C 1.46494 * 119.99979 * 121.35315 * 4 2 1 6 6 C 1.50701 * 109.47324 * 270.00325 * 5 4 2 7 7 H 1.07998 * 119.99693 * 0.02562 * 6 5 4 8 8 C 1.37876 * 120.00211 * 179.97438 * 6 5 4 9 9 N 1.31520 * 119.99951 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 120.00019 * 179.97438 * 8 6 5 11 11 H 1.48495 * 109.47466 * 90.00091 * 10 8 6 12 12 H 1.48502 * 109.46884 * 209.99884 * 10 8 6 13 13 H 1.48496 * 109.47008 * 329.99509 * 10 8 6 14 14 C 1.34772 * 119.99768 * 301.35286 * 4 2 1 15 15 O 1.21587 * 120.00101 * 212.67535 * 14 4 2 16 16 C 1.47602 * 120.00230 * 32.68196 * 14 4 2 17 17 C 1.39761 * 120.08050 * 317.41573 * 16 14 4 18 18 C 1.37642 * 119.94217 * 179.97438 * 17 16 14 19 19 C 1.39321 * 120.05979 * 359.76581 * 18 17 16 20 20 C 1.39010 * 120.08167 * 0.48054 * 19 18 17 21 21 C 1.37653 * 120.15620 * 359.51199 * 20 19 18 22 22 C 1.50699 * 119.78074 * 179.76115 * 20 19 18 23 23 C 1.52911 * 109.49079 * 325.83783 * 22 20 19 24 24 C 1.50497 * 109.87079 * 48.53000 * 23 22 20 25 25 O 1.21276 * 119.59608 * 144.82408 * 24 23 22 26 26 N 1.34525 * 120.80538 * 324.79143 * 24 23 22 27 27 H 1.08999 * 109.47283 * 253.43590 * 1 2 3 28 28 H 1.08995 * 109.47381 * 13.43950 * 1 2 3 29 29 H 1.09003 * 109.46268 * 133.43826 * 1 2 3 30 30 H 1.08991 * 109.47524 * 239.99843 * 2 1 3 31 31 H 1.08998 * 109.46458 * 223.95269 * 3 2 1 32 32 H 1.08997 * 109.46953 * 343.95561 * 3 2 1 33 33 H 1.08995 * 109.46859 * 103.95734 * 3 2 1 34 34 H 1.09009 * 109.46770 * 30.00210 * 5 4 2 35 35 H 1.08998 * 109.47456 * 150.00040 * 5 4 2 36 36 H 0.96994 * 120.00155 * 179.97438 * 9 8 6 37 37 H 1.08004 * 120.03171 * 359.94396 * 17 16 14 38 38 H 1.08001 * 119.95591 * 180.02562 * 18 17 16 39 39 H 1.07997 * 120.04229 * 180.26358 * 21 20 19 40 40 H 1.09002 * 109.46417 * 205.84021 * 22 20 19 41 41 H 1.08999 * 109.46542 * 85.84400 * 22 20 19 42 42 H 1.09001 * 109.40617 * 288.40714 * 23 22 20 43 43 H 1.09001 * 109.40141 * 168.64882 * 23 22 20 44 44 H 0.96998 * 119.72533 * 180.77675 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0183 -0.6905 1.1963 5 6 2.8848 -1.8641 1.0622 6 6 2.0380 -3.1090 0.9968 7 1 0.9620 -3.0334 1.0494 8 6 2.6370 -4.3442 0.8688 9 7 3.9473 -4.4361 0.8032 10 14 1.5873 -5.8873 0.7885 11 1 1.2474 -6.1818 -0.6268 12 1 2.3416 -7.0296 1.3643 13 1 0.3386 -5.6775 1.5642 14 6 1.6703 -0.2461 2.4201 15 8 2.4443 -0.3596 3.3509 16 6 0.3496 0.3785 2.6305 17 6 -0.1531 1.2863 1.6944 18 6 -1.3853 1.8666 1.8932 19 6 -2.1334 1.5461 3.0240 20 6 -1.6328 0.6472 3.9588 21 6 -0.4013 0.0631 3.7660 22 6 -2.4454 0.3094 5.1821 23 6 -3.2344 1.5415 5.6267 24 6 -3.9426 2.1489 4.4458 25 8 -5.0350 2.6535 4.5972 26 7 -3.3784 2.1396 3.2247 27 1 -0.3634 -0.2930 0.9850 28 1 -0.3634 0.9995 -0.2388 29 1 -0.3632 -0.7067 -0.7463 30 1 1.8934 -0.5138 -0.8899 31 1 2.8585 1.5385 -0.7133 32 1 1.2299 2.1143 -0.2840 33 1 2.3947 1.7025 0.9973 34 1 3.4749 -1.7777 0.1497 35 1 3.5521 -1.9233 1.9221 36 1 4.3687 -5.3051 0.7135 37 1 0.4249 1.5327 0.8160 38 1 -1.7742 2.5679 1.1697 39 1 -0.0161 -0.6382 4.4913 40 1 -1.7790 -0.0045 5.9856 41 1 -3.1370 -0.4995 4.9468 42 1 -2.5506 2.2743 6.0551 43 1 -3.9681 1.2498 6.3782 44 1 -3.8438 2.5456 2.4767 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000227739962.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:44 Heat of formation + Delta-G solvation = 27.814733 kcal Electronic energy + Delta-G solvation = -27073.076320 eV Core-core repulsion = 23379.248305 eV Total energy + Delta-G solvation = -3693.828015 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.49437 -40.31157 -38.17539 -36.68286 -35.21310 -34.16904 -33.15828 -31.57753 -30.08879 -29.72341 -27.22704 -26.87299 -24.82343 -24.08322 -23.00073 -22.31227 -21.77250 -19.99661 -18.11819 -17.96608 -17.32539 -16.59628 -16.32962 -16.03131 -15.73700 -15.34314 -14.90802 -14.53854 -14.35489 -14.20324 -14.04068 -13.78437 -13.67467 -13.34806 -12.96170 -12.76129 -12.40467 -12.25164 -12.07484 -11.92757 -11.77934 -11.51159 -11.28677 -11.13057 -11.10321 -10.91385 -10.66526 -10.45425 -10.20774 -10.16049 -10.00228 -9.69593 -9.19608 -8.65447 -8.50260 -7.88616 -7.60665 -6.10582 -4.17221 0.89720 1.35286 2.26545 2.82335 3.13162 3.24995 3.32305 3.35562 3.69500 3.92148 4.15651 4.37755 4.48087 4.57068 4.76075 4.90451 4.92381 4.94690 5.04216 5.18392 5.23228 5.26421 5.35417 5.47380 5.53848 5.60666 5.69388 5.76717 5.79211 5.81461 5.93230 6.00317 6.14902 6.16960 6.29968 6.43429 6.49412 6.53400 6.68116 6.99338 7.06785 7.38197 7.55035 7.73588 7.87406 8.16114 8.35445 8.75233 8.94118 9.48909 10.96628 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.015768 B = 0.003915 C = 0.003535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1775.302608 B = 7150.701996 C = 7918.775987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.136 3.864 3 C -0.180 4.180 4 N -0.609 5.609 5 C 0.249 3.751 6 C -0.534 4.534 7 H 0.059 0.941 8 C 0.063 3.937 9 N -0.892 5.892 10 Si 0.897 3.103 11 H -0.280 1.280 12 H -0.285 1.285 13 H -0.274 1.274 14 C 0.573 3.427 15 O -0.531 6.531 16 C -0.164 4.164 17 C -0.057 4.057 18 C -0.194 4.194 19 C 0.179 3.821 20 C -0.151 4.151 21 C -0.024 4.024 22 C -0.074 4.074 23 C -0.138 4.138 24 C 0.523 3.477 25 O -0.535 6.535 26 N -0.660 5.660 27 H 0.097 0.903 28 H 0.069 0.931 29 H 0.058 0.942 30 H 0.097 0.903 31 H 0.067 0.933 32 H 0.068 0.932 33 H 0.065 0.935 34 H 0.032 0.968 35 H 0.045 0.955 36 H 0.264 0.736 37 H 0.180 0.820 38 H 0.129 0.871 39 H 0.136 0.864 40 H 0.093 0.907 41 H 0.081 0.919 42 H 0.104 0.896 43 H 0.108 0.892 44 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.144 13.385 1.371 17.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.258 4.258 2 C 0.031 3.969 3 C -0.238 4.238 4 N -0.341 5.341 5 C 0.130 3.870 6 C -0.573 4.573 7 H 0.077 0.923 8 C -0.140 4.140 9 N -0.531 5.531 10 Si 0.724 3.276 11 H -0.206 1.206 12 H -0.211 1.211 13 H -0.199 1.199 14 C 0.361 3.639 15 O -0.408 6.408 16 C -0.169 4.169 17 C -0.075 4.075 18 C -0.214 4.214 19 C 0.082 3.918 20 C -0.154 4.154 21 C -0.043 4.043 22 C -0.111 4.111 23 C -0.177 4.177 24 C 0.312 3.688 25 O -0.411 6.411 26 N -0.304 5.304 27 H 0.115 0.885 28 H 0.087 0.913 29 H 0.077 0.923 30 H 0.115 0.885 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.084 0.916 34 H 0.050 0.950 35 H 0.063 0.937 36 H 0.074 0.926 37 H 0.196 0.804 38 H 0.147 0.853 39 H 0.154 0.846 40 H 0.111 0.889 41 H 0.099 0.901 42 H 0.122 0.878 43 H 0.126 0.874 44 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -11.113 13.377 2.138 17.522 hybrid contribution -0.768 -0.925 -0.655 1.370 sum -11.882 12.451 1.482 17.274 Atomic orbital electron populations 1.23731 0.96357 1.01340 1.04340 1.21013 0.93432 0.92246 0.90187 1.22729 1.01521 0.96198 1.03309 1.48007 1.51665 1.31278 1.03196 1.19337 0.89258 0.79933 0.98481 1.21522 0.93577 0.91093 1.51103 0.92283 1.24940 0.94977 0.99031 0.95022 1.69935 1.08537 1.24958 1.49621 0.86519 0.80319 0.82537 0.78201 1.20583 1.21060 1.19878 1.17913 0.85263 0.77406 0.83290 1.90718 1.51683 1.55299 1.43084 1.20255 0.97530 1.02120 0.96953 1.22843 0.95712 0.91537 0.97394 1.20588 0.96221 1.05399 0.99200 1.17724 0.85077 0.93389 0.95566 1.19218 0.97258 1.00790 0.98110 1.20835 0.91668 0.96493 0.95309 1.20389 0.98175 0.96854 0.95675 1.21704 1.01033 0.99098 0.95911 1.20820 0.85367 0.78161 0.84501 1.90765 1.20431 1.45240 1.84640 1.43523 1.18806 1.56609 1.11437 0.88491 0.91264 0.92267 0.88456 0.91402 0.91335 0.91590 0.94964 0.93708 0.92622 0.80391 0.85272 0.84645 0.88867 0.90059 0.87771 0.87403 0.75254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.64 7.72 37.16 0.29 -2.36 16 2 C 0.14 2.08 3.27 -67.92 -0.22 1.86 16 3 C -0.18 -2.15 8.37 37.16 0.31 -1.84 16 4 N -0.61 -12.33 2.38 -168.66 -0.40 -12.73 16 5 C 0.25 6.25 5.32 -5.20 -0.03 6.22 16 6 C -0.53 -14.41 9.39 -34.44 -0.32 -14.73 16 7 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 8 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 9 N -0.89 -25.70 13.29 55.43 0.74 -24.96 16 10 Si 0.90 21.07 29.54 -169.99 -5.02 16.05 16 11 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 12 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 13 H -0.27 -6.39 7.11 56.52 0.40 -5.98 16 14 C 0.57 11.66 5.84 -12.44 -0.07 11.59 16 15 O -0.53 -12.77 16.80 5.29 0.09 -12.68 16 16 C -0.16 -2.61 4.28 -104.95 -0.45 -3.06 16 17 C -0.06 -0.71 4.86 -39.23 -0.19 -0.90 16 18 C -0.19 -2.02 9.64 -39.40 -0.38 -2.40 16 19 C 0.18 1.98 6.51 -83.74 -0.55 1.44 16 20 C -0.15 -1.80 5.65 -104.55 -0.59 -2.39 16 21 C -0.02 -0.34 9.29 -39.23 -0.36 -0.71 16 22 C -0.07 -0.69 6.00 -27.93 -0.17 -0.85 16 23 C -0.14 -1.20 6.08 -28.03 -0.17 -1.37 16 24 C 0.52 5.89 7.72 -11.20 -0.09 5.81 16 25 O -0.53 -7.73 17.91 5.56 0.10 -7.63 16 26 N -0.66 -6.63 5.34 -9.98 -0.05 -6.69 16 27 H 0.10 1.46 4.00 -61.42 -0.25 1.22 16 28 H 0.07 0.67 5.24 -51.93 -0.27 0.40 16 29 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.10 1.53 7.80 -51.93 -0.41 1.12 16 31 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.07 0.60 6.17 -51.93 -0.32 0.28 16 33 H 0.07 0.90 6.82 -51.93 -0.35 0.54 16 34 H 0.03 0.82 7.93 -51.92 -0.41 0.41 16 35 H 0.04 1.28 7.36 -51.93 -0.38 0.90 16 36 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 37 H 0.18 1.99 1.06 -53.86 -0.06 1.94 16 38 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 39 H 0.14 2.01 8.06 -52.49 -0.42 1.59 16 40 H 0.09 0.75 8.06 -51.93 -0.42 0.33 16 41 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.11 0.80 8.14 -51.93 -0.42 0.37 16 44 H 0.41 3.41 8.82 -40.82 -0.36 3.05 16 LS Contribution 348.16 15.07 5.25 5.25 Total: -1.00 -33.52 348.16 -8.12 -41.65 By element: Atomic # 1 Polarization: 9.56 SS G_CDS: -5.73 Total: 3.83 kcal Atomic # 6 Polarization: 1.01 SS G_CDS: -3.09 Total: -2.08 kcal Atomic # 7 Polarization: -44.66 SS G_CDS: 0.28 Total: -44.38 kcal Atomic # 8 Polarization: -20.50 SS G_CDS: 0.19 Total: -20.31 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -33.52 -8.12 -41.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227739962.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.464 kcal (2) G-P(sol) polarization free energy of solvation -33.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.649 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds