Wall clock time and date at job start Tue Mar 31 2020 11:26:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53008 * 109.46795 * 2 1 4 4 N 1.46508 * 109.46983 * 119.99486 * 2 1 3 5 5 C 1.46494 * 119.99979 * 121.35315 * 4 2 1 6 6 C 1.50701 * 109.47324 * 270.00325 * 5 4 2 7 7 H 1.07998 * 119.99693 * 0.02562 * 6 5 4 8 8 C 1.37876 * 120.00211 * 179.97438 * 6 5 4 9 9 N 1.31520 * 119.99951 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 120.00019 * 179.97438 * 8 6 5 11 11 H 1.48495 * 109.47466 * 90.00091 * 10 8 6 12 12 H 1.48502 * 109.46884 * 209.99884 * 10 8 6 13 13 H 1.48496 * 109.47008 * 329.99509 * 10 8 6 14 14 C 1.34772 * 119.99768 * 301.35286 * 4 2 1 15 15 O 1.21587 * 120.00101 * 212.67535 * 14 4 2 16 16 C 1.47602 * 120.00230 * 32.68196 * 14 4 2 17 17 C 1.39761 * 120.08050 * 317.41573 * 16 14 4 18 18 C 1.37642 * 119.94217 * 179.97438 * 17 16 14 19 19 C 1.39321 * 120.05979 * 359.76581 * 18 17 16 20 20 C 1.39010 * 120.08167 * 0.48054 * 19 18 17 21 21 C 1.37653 * 120.15620 * 359.51199 * 20 19 18 22 22 C 1.50699 * 119.78074 * 179.76115 * 20 19 18 23 23 C 1.52911 * 109.49079 * 325.83783 * 22 20 19 24 24 C 1.50497 * 109.87079 * 48.53000 * 23 22 20 25 25 O 1.21276 * 119.59608 * 144.82408 * 24 23 22 26 26 N 1.34525 * 120.80538 * 324.79143 * 24 23 22 27 27 H 1.08999 * 109.47283 * 253.43590 * 1 2 3 28 28 H 1.08995 * 109.47381 * 13.43950 * 1 2 3 29 29 H 1.09003 * 109.46268 * 133.43826 * 1 2 3 30 30 H 1.08991 * 109.47524 * 239.99843 * 2 1 3 31 31 H 1.08998 * 109.46458 * 223.95269 * 3 2 1 32 32 H 1.08997 * 109.46953 * 343.95561 * 3 2 1 33 33 H 1.08995 * 109.46859 * 103.95734 * 3 2 1 34 34 H 1.09009 * 109.46770 * 30.00210 * 5 4 2 35 35 H 1.08998 * 109.47456 * 150.00040 * 5 4 2 36 36 H 0.96994 * 120.00155 * 179.97438 * 9 8 6 37 37 H 1.08004 * 120.03171 * 359.94396 * 17 16 14 38 38 H 1.08001 * 119.95591 * 180.02562 * 18 17 16 39 39 H 1.07997 * 120.04229 * 180.26358 * 21 20 19 40 40 H 1.09002 * 109.46417 * 205.84021 * 22 20 19 41 41 H 1.08999 * 109.46542 * 85.84400 * 22 20 19 42 42 H 1.09001 * 109.40617 * 288.40714 * 23 22 20 43 43 H 1.09001 * 109.40141 * 168.64882 * 23 22 20 44 44 H 0.96998 * 119.72533 * 180.77675 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0183 -0.6905 1.1963 5 6 2.8848 -1.8641 1.0622 6 6 2.0380 -3.1090 0.9968 7 1 0.9620 -3.0334 1.0494 8 6 2.6370 -4.3442 0.8688 9 7 3.9473 -4.4361 0.8032 10 14 1.5873 -5.8873 0.7885 11 1 1.2474 -6.1818 -0.6268 12 1 2.3416 -7.0296 1.3643 13 1 0.3386 -5.6775 1.5642 14 6 1.6703 -0.2461 2.4201 15 8 2.4443 -0.3596 3.3509 16 6 0.3496 0.3785 2.6305 17 6 -0.1531 1.2863 1.6944 18 6 -1.3853 1.8666 1.8932 19 6 -2.1334 1.5461 3.0240 20 6 -1.6328 0.6472 3.9588 21 6 -0.4013 0.0631 3.7660 22 6 -2.4454 0.3094 5.1821 23 6 -3.2344 1.5415 5.6267 24 6 -3.9426 2.1489 4.4458 25 8 -5.0350 2.6535 4.5972 26 7 -3.3784 2.1396 3.2247 27 1 -0.3634 -0.2930 0.9850 28 1 -0.3634 0.9995 -0.2388 29 1 -0.3632 -0.7067 -0.7463 30 1 1.8934 -0.5138 -0.8899 31 1 2.8585 1.5385 -0.7133 32 1 1.2299 2.1143 -0.2840 33 1 2.3947 1.7025 0.9973 34 1 3.4749 -1.7777 0.1497 35 1 3.5521 -1.9233 1.9221 36 1 4.3687 -5.3051 0.7135 37 1 0.4249 1.5327 0.8160 38 1 -1.7742 2.5679 1.1697 39 1 -0.0161 -0.6382 4.4913 40 1 -1.7790 -0.0045 5.9856 41 1 -3.1370 -0.4995 4.9468 42 1 -2.5506 2.2743 6.0551 43 1 -3.9681 1.2498 6.3782 44 1 -3.8438 2.5456 2.4767 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000227739962.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:43 Heat of formation + Delta-G solvation = 5.593575 kcal Electronic energy + Delta-G solvation = -27074.039902 eV Core-core repulsion = 23379.248305 eV Total energy + Delta-G solvation = -3694.791597 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.55543 -41.41778 -39.35442 -38.07684 -36.40901 -35.22807 -34.82526 -33.13726 -31.16075 -30.74448 -29.02945 -27.95449 -25.76625 -25.53915 -23.95484 -23.90784 -22.95475 -21.08238 -19.15457 -19.04213 -18.65209 -18.26745 -17.60735 -17.33281 -16.90702 -16.43790 -16.32205 -16.18159 -15.42843 -15.30427 -15.19424 -14.83263 -14.67272 -14.61589 -14.15373 -13.93026 -13.69720 -13.67017 -13.32976 -13.17471 -13.04474 -12.84926 -12.71344 -12.53398 -12.34589 -12.16349 -12.13893 -12.05235 -11.67669 -11.45968 -11.09764 -11.02543 -10.80640 -10.64523 -9.59491 -9.35304 -8.83844 -8.21659 -6.38565 -0.14611 0.39557 1.30881 1.37716 1.39711 1.49992 1.75346 2.00095 2.28125 2.42399 2.76441 3.06978 3.33009 3.62909 3.66221 3.76864 3.87270 3.97994 4.03895 4.16174 4.27184 4.30270 4.41434 4.45957 4.68659 4.71988 4.79672 4.87259 4.88653 4.90852 4.99100 5.01844 5.08610 5.12657 5.17767 5.21424 5.25708 5.41398 5.50593 5.60632 5.61480 5.78331 5.92395 6.06800 6.10803 6.70247 6.79070 6.91021 7.20436 7.37086 8.84371 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.015768 B = 0.003915 C = 0.003535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1775.302608 B = 7150.701996 C = 7918.775987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.124 3.876 3 C -0.174 4.174 4 N -0.615 5.615 5 C 0.264 3.736 6 C -0.544 4.544 7 H 0.058 0.942 8 C 0.010 3.990 9 N -0.928 5.928 10 Si 0.967 3.033 11 H -0.265 1.265 12 H -0.282 1.282 13 H -0.270 1.270 14 C 0.567 3.433 15 O -0.588 6.588 16 C -0.189 4.189 17 C -0.049 4.049 18 C -0.177 4.177 19 C 0.186 3.814 20 C -0.150 4.150 21 C -0.039 4.039 22 C -0.073 4.073 23 C -0.133 4.133 24 C 0.521 3.479 25 O -0.567 6.567 26 N -0.650 5.650 27 H 0.080 0.920 28 H 0.116 0.884 29 H 0.057 0.943 30 H 0.087 0.913 31 H 0.075 0.925 32 H 0.115 0.885 33 H 0.046 0.954 34 H 0.020 0.980 35 H -0.004 1.004 36 H 0.267 0.733 37 H 0.193 0.807 38 H 0.173 0.827 39 H 0.117 0.883 40 H 0.103 0.897 41 H 0.086 0.914 42 H 0.117 0.883 43 H 0.124 0.876 44 H 0.420 0.580 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.321 14.935 0.194 20.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C 0.021 3.979 3 C -0.231 4.231 4 N -0.347 5.347 5 C 0.143 3.857 6 C -0.583 4.583 7 H 0.077 0.923 8 C -0.189 4.189 9 N -0.567 5.567 10 Si 0.791 3.209 11 H -0.190 1.190 12 H -0.208 1.208 13 H -0.194 1.194 14 C 0.358 3.642 15 O -0.469 6.469 16 C -0.194 4.194 17 C -0.066 4.066 18 C -0.197 4.197 19 C 0.089 3.911 20 C -0.153 4.153 21 C -0.059 4.059 22 C -0.110 4.110 23 C -0.172 4.172 24 C 0.312 3.688 25 O -0.446 6.446 26 N -0.293 5.293 27 H 0.098 0.902 28 H 0.134 0.866 29 H 0.076 0.924 30 H 0.105 0.895 31 H 0.094 0.906 32 H 0.133 0.867 33 H 0.065 0.935 34 H 0.038 0.962 35 H 0.014 0.986 36 H 0.076 0.924 37 H 0.209 0.791 38 H 0.191 0.809 39 H 0.135 0.865 40 H 0.122 0.878 41 H 0.104 0.896 42 H 0.136 0.864 43 H 0.142 0.858 44 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges -14.318 14.960 0.912 20.728 hybrid contribution 0.229 -1.355 -0.280 1.403 sum -14.089 13.605 0.632 19.596 Atomic orbital electron populations 1.23711 0.94104 1.04047 1.03411 1.21392 0.95402 0.93587 0.87543 1.22685 1.03438 0.94429 1.02569 1.47989 1.51183 1.30237 1.05283 1.18781 0.89281 0.82065 0.95556 1.21761 0.93596 0.92015 1.50931 0.92347 1.25858 0.96198 1.02452 0.94439 1.70065 1.10330 1.25908 1.50439 0.85425 0.78459 0.78146 0.78872 1.18992 1.20789 1.19421 1.18687 0.86526 0.76680 0.82303 1.90666 1.53651 1.58002 1.44612 1.19926 0.95586 1.04522 0.99327 1.22897 0.96491 0.90481 0.96764 1.20964 0.94718 1.04672 0.99330 1.17829 0.85274 0.92579 0.95414 1.19370 0.96275 1.00369 0.99252 1.20770 0.92964 0.97227 0.94912 1.20446 0.98174 0.97381 0.95028 1.21743 1.01316 0.98830 0.95318 1.21223 0.84903 0.77471 0.85226 1.90761 1.21896 1.46822 1.85129 1.43447 1.18230 1.55963 1.11709 0.90157 0.86628 0.92426 0.89483 0.90596 0.86690 0.93508 0.96191 0.98587 0.92385 0.79120 0.80920 0.86454 0.87831 0.89567 0.86449 0.85823 0.73994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -4.66 7.72 71.98 0.56 -4.11 16 2 C 0.12 3.72 3.27 44.99 0.15 3.87 16 3 C -0.17 -3.81 8.37 71.98 0.60 -3.21 16 4 N -0.61 -26.11 2.38 -805.79 -1.92 -28.03 16 5 C 0.26 14.21 5.32 85.63 0.46 14.66 16 6 C -0.54 -30.55 9.39 25.60 0.24 -30.31 16 7 H 0.06 3.21 7.81 -2.91 -0.02 3.19 16 8 C 0.01 0.55 5.46 84.65 0.46 1.01 16 9 N -0.93 -55.42 13.29 21.45 0.28 -55.13 16 10 Si 0.97 43.73 29.54 68.60 2.03 45.76 16 11 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 12 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 13 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 14 C 0.57 24.34 5.84 86.72 0.51 24.85 16 15 O -0.59 -30.70 16.80 -3.99 -0.07 -30.77 16 16 C -0.19 -6.04 4.28 -20.07 -0.09 -6.12 16 17 C -0.05 -1.07 4.86 22.50 0.11 -0.96 16 18 C -0.18 -2.86 9.64 22.39 0.22 -2.64 16 19 C 0.19 3.46 6.51 38.39 0.25 3.71 16 20 C -0.15 -3.30 5.65 -19.82 -0.11 -3.42 16 21 C -0.04 -1.15 9.29 22.49 0.21 -0.94 16 22 C -0.07 -1.22 6.00 29.82 0.18 -1.04 16 23 C -0.13 -1.95 6.08 29.75 0.18 -1.76 16 24 C 0.52 10.24 7.72 87.63 0.68 10.91 16 25 O -0.57 -15.07 17.91 -3.02 -0.05 -15.13 16 26 N -0.65 -10.62 5.34 -304.01 -1.62 -12.24 16 27 H 0.08 2.28 4.00 -11.30 -0.05 2.24 16 28 H 0.12 1.63 5.24 -2.39 -0.01 1.62 16 29 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.09 2.75 7.80 -2.39 -0.02 2.73 16 31 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.12 1.44 6.17 -2.39 -0.01 1.42 16 33 H 0.05 1.24 6.82 -2.39 -0.02 1.22 16 34 H 0.02 1.10 7.93 -2.38 -0.02 1.08 16 35 H 0.00 -0.25 7.36 -2.39 -0.02 -0.27 16 36 H 0.27 14.97 8.31 -92.71 -0.77 14.19 16 37 H 0.19 3.56 1.06 -4.20 0.00 3.55 16 38 H 0.17 1.36 8.06 -2.91 -0.02 1.34 16 39 H 0.12 3.75 8.06 -2.91 -0.02 3.72 16 40 H 0.10 1.52 8.06 -2.39 -0.02 1.50 16 41 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 42 H 0.12 1.46 8.14 -2.39 -0.02 1.44 16 43 H 0.12 1.47 8.14 -2.39 -0.02 1.45 16 44 H 0.42 5.19 8.82 -92.71 -0.82 4.37 16 Total: -1.00 -79.10 348.16 3.44 -75.66 By element: Atomic # 1 Polarization: 15.17 SS G_CDS: 0.20 Total: 15.37 kcal Atomic # 6 Polarization: -0.08 SS G_CDS: 4.59 Total: 4.51 kcal Atomic # 7 Polarization: -92.16 SS G_CDS: -3.25 Total: -95.41 kcal Atomic # 8 Polarization: -45.78 SS G_CDS: -0.12 Total: -45.90 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.76 kcal Total: -79.10 3.44 -75.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227739962.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.255 kcal (2) G-P(sol) polarization free energy of solvation -79.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.662 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds