Wall clock time and date at job start Tue Mar 31 2020 11:19:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47354 * 2 1 4 4 N 1.46503 * 109.47104 * 120.00620 * 2 1 3 5 5 C 1.46768 * 124.35073 * 120.00088 * 4 2 1 6 6 C 1.54476 * 105.47127 * 162.95958 * 5 4 2 7 7 H 1.09001 * 110.96885 * 267.25711 * 6 5 4 8 8 N 1.46503 * 110.96924 * 143.53470 * 6 5 4 9 9 C 1.34771 * 120.00350 * 158.08819 * 8 6 5 10 10 O 1.21551 * 119.99977 * 359.97438 * 9 8 6 11 11 C 1.47888 * 120.00078 * 179.97438 * 9 8 6 12 12 C 1.39914 * 120.02616 * 0.02562 * 11 9 8 13 13 C 1.38327 * 120.36149 * 179.97438 * 12 11 9 14 14 C 1.37757 * 120.41025 * 359.71794 * 13 12 11 15 15 C 1.40751 * 120.03634 * 0.55817 * 14 13 12 16 16 C 1.41440 * 120.17817 * 179.71635 * 15 14 13 17 17 H 1.08003 * 119.99659 * 335.22609 * 16 15 14 18 18 C 1.39931 * 120.00424 * 154.95541 * 16 15 14 19 19 N 1.30828 * 119.99804 * 342.54231 * 18 16 15 20 20 Si 1.86798 * 120.00560 * 162.53952 * 18 16 15 21 21 H 1.48498 * 109.47042 * 59.99674 * 20 18 16 22 22 H 1.48497 * 109.47326 * 180.02562 * 20 18 16 23 23 H 1.48508 * 109.46757 * 300.00200 * 20 18 16 24 24 C 1.38994 * 120.02174 * 180.02562 * 11 9 8 25 25 C 1.54628 * 101.80362 * 25.39471 * 6 5 4 26 26 C 1.34420 * 124.34822 * 299.96792 * 4 2 1 27 27 O 1.21285 * 124.94080 * 0.44496 * 26 4 2 28 28 H 1.09004 * 109.46538 * 299.99868 * 1 2 3 29 29 H 1.08997 * 109.46970 * 59.99555 * 1 2 3 30 30 H 1.09005 * 109.47127 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46755 * 239.99637 * 2 1 3 32 32 H 1.09000 * 109.46968 * 179.97438 * 3 2 1 33 33 H 1.08997 * 109.47445 * 300.00154 * 3 2 1 34 34 H 1.08998 * 109.46798 * 60.00316 * 3 2 1 35 35 H 1.08997 * 110.24716 * 43.95595 * 5 4 2 36 36 H 1.09006 * 110.31454 * 281.99343 * 5 4 2 37 37 H 0.97001 * 119.99834 * 338.07965 * 8 6 5 38 38 H 1.08000 * 119.82058 * 359.95679 * 12 11 9 39 39 H 1.07997 * 119.80123 * 180.02562 * 13 12 11 40 40 H 1.08004 * 119.98375 * 180.27774 * 14 13 12 41 41 H 0.96999 * 120.00693 * 180.02562 * 19 18 16 42 42 H 1.07997 * 120.20583 * 359.97438 * 24 11 9 43 43 H 1.09002 * 110.48616 * 93.89624 * 25 6 5 44 44 H 1.08997 * 110.48630 * 216.54439 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6908 1.1961 5 6 2.8656 -1.8889 1.1726 6 6 3.4728 -1.9922 2.5893 7 1 4.4409 -1.4935 2.6360 8 7 3.5857 -3.3907 3.0107 9 6 4.4608 -3.7352 3.9760 10 8 5.1568 -2.8855 4.4967 11 6 4.5743 -5.1469 4.4017 12 6 3.7738 -6.1254 3.8024 13 6 3.8746 -7.4480 4.1949 14 6 4.7680 -7.8181 5.1760 15 6 5.5775 -6.8468 5.7944 16 6 6.4915 -7.2225 6.8063 17 1 6.3179 -8.1173 7.3857 18 6 7.6237 -6.4381 7.0529 19 7 8.0272 -5.5725 6.1587 20 14 8.5591 -6.6267 8.6588 21 1 9.0550 -8.0210 8.7820 22 1 9.7099 -5.6883 8.6745 23 1 7.6556 -6.3203 9.7968 24 6 5.4763 -5.5026 5.3976 25 6 2.4219 -1.2411 3.4393 26 6 1.7485 -0.3082 2.4562 27 8 1.0649 0.6462 2.7610 28 1 -0.3632 0.5138 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 3.1300 1.4424 0.0005 33 1 1.6767 1.9563 -0.8899 34 1 1.6768 1.9562 0.8900 35 1 3.6562 -1.7774 0.4305 36 1 2.2657 -2.7724 0.9541 37 1 3.0304 -4.0688 2.5950 38 1 3.0731 -5.8466 3.0293 39 1 3.2526 -8.1960 3.7259 40 1 4.8442 -8.8534 5.4740 41 1 8.8122 -5.0289 6.3294 42 1 6.0965 -4.7506 5.8627 43 1 1.6986 -1.9412 3.8575 44 1 2.9080 -0.6738 4.2329 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000263903167.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:19:23 Heat of formation + Delta-G solvation = -55.112615 kcal Electronic energy + Delta-G solvation = -25783.742695 eV Core-core repulsion = 22086.318680 eV Total energy + Delta-G solvation = -3697.424015 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.85658 -39.17966 -37.20116 -36.53115 -35.52681 -33.83545 -32.98217 -30.44352 -29.51915 -29.14353 -27.48992 -27.44338 -25.35825 -23.21389 -22.65906 -21.43789 -20.89578 -19.82385 -18.97608 -17.87264 -16.95776 -16.60774 -16.35751 -15.59859 -15.24416 -14.85306 -14.66684 -14.50471 -14.15262 -13.90946 -13.86328 -13.70482 -13.41892 -13.18614 -12.90090 -12.73059 -12.55649 -12.36052 -12.24871 -11.92936 -11.68850 -11.54151 -11.46136 -11.28872 -11.18841 -11.11123 -10.79812 -10.54804 -10.10430 -9.85777 -9.75667 -9.25515 -9.14191 -8.94847 -8.85903 -7.70239 -7.57700 -6.84664 -4.46432 2.11605 2.48359 2.67483 2.77405 3.05215 3.06708 3.13135 3.42665 3.73857 3.88565 4.21188 4.32631 4.56892 4.67860 4.74888 4.80128 4.89951 4.92852 5.19518 5.35346 5.35893 5.41180 5.52197 5.52860 5.55281 5.59902 5.80976 5.90287 5.94094 5.99305 6.02266 6.20374 6.40884 6.65170 6.66579 6.92140 6.93810 6.95181 7.15881 7.31957 7.62168 7.67652 7.85133 7.97345 8.04940 8.12550 8.44728 8.74502 8.77341 8.81631 10.09953 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.024041 B = 0.002695 C = 0.002531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.408046 B =10385.344123 C =11060.886659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.152 3.848 3 C -0.168 4.168 4 N -0.617 5.617 5 C 0.098 3.902 6 C 0.140 3.860 7 H 0.110 0.890 8 N -0.728 5.728 9 C 0.568 3.432 10 O -0.540 6.540 11 C -0.129 4.129 12 C -0.219 4.219 13 C -0.097 4.097 14 C -0.211 4.211 15 C 0.098 3.902 16 C -0.459 4.459 17 H 0.081 0.919 18 C 0.073 3.927 19 N -0.783 5.783 20 Si 0.911 3.089 21 H -0.265 1.265 22 H -0.277 1.277 23 H -0.262 1.262 24 C -0.090 4.090 25 C -0.171 4.171 26 C 0.525 3.475 27 O -0.529 6.529 28 H 0.072 0.928 29 H 0.066 0.934 30 H 0.056 0.944 31 H 0.088 0.912 32 H 0.057 0.943 33 H 0.066 0.934 34 H 0.071 0.929 35 H 0.087 0.913 36 H 0.077 0.923 37 H 0.402 0.598 38 H 0.089 0.911 39 H 0.093 0.907 40 H 0.096 0.904 41 H 0.286 0.714 42 H 0.135 0.865 43 H 0.109 0.891 44 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.224 6.873 -11.970 16.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.050 3.950 3 C -0.226 4.226 4 N -0.352 5.352 5 C -0.026 4.026 6 C 0.033 3.967 7 H 0.128 0.872 8 N -0.383 5.383 9 C 0.359 3.641 10 O -0.417 6.417 11 C -0.132 4.132 12 C -0.239 4.239 13 C -0.116 4.116 14 C -0.231 4.231 15 C 0.096 3.904 16 C -0.488 4.488 17 H 0.099 0.901 18 C -0.146 4.146 19 N -0.407 5.407 20 Si 0.735 3.265 21 H -0.189 1.189 22 H -0.202 1.202 23 H -0.187 1.187 24 C -0.111 4.111 25 C -0.212 4.212 26 C 0.313 3.687 27 O -0.406 6.406 28 H 0.091 0.909 29 H 0.085 0.915 30 H 0.075 0.925 31 H 0.106 0.894 32 H 0.076 0.924 33 H 0.085 0.915 34 H 0.090 0.910 35 H 0.105 0.895 36 H 0.095 0.905 37 H 0.238 0.762 38 H 0.108 0.892 39 H 0.111 0.889 40 H 0.114 0.886 41 H 0.097 0.903 42 H 0.152 0.848 43 H 0.127 0.873 44 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -8.889 8.207 -11.557 16.732 hybrid contribution 0.235 -0.542 0.290 0.658 sum -8.655 7.665 -11.268 16.144 Atomic orbital electron populations 1.22187 0.94679 1.02403 1.03303 1.20948 0.94492 0.93144 0.86405 1.22189 1.01420 0.95754 1.03283 1.48446 1.51604 1.28886 1.06296 1.22322 0.94297 0.88043 0.97916 1.21598 0.99502 0.84143 0.91416 0.87208 1.45896 1.43280 1.07609 1.41494 1.18882 0.77849 0.89541 0.77790 1.90716 1.43943 1.52027 1.55005 1.19410 1.01827 0.90180 1.01815 1.20312 1.04740 0.93526 1.05285 1.20437 0.98413 0.94829 0.97876 1.21116 1.03130 0.97865 1.00998 1.17603 0.91114 0.90648 0.91060 1.19570 1.04621 1.08911 1.15697 0.90071 1.25964 0.97394 0.93667 0.97569 1.69769 1.21107 1.17513 1.32348 0.86315 0.78923 0.79160 0.82092 1.18947 1.20196 1.18684 1.21651 0.96336 0.96910 0.96157 1.22911 0.99733 0.99549 0.99003 1.20870 0.79781 0.84468 0.83583 1.90682 1.39497 1.28937 1.81459 0.90940 0.91504 0.92466 0.89413 0.92360 0.91499 0.90952 0.89486 0.90484 0.76182 0.89244 0.88886 0.88600 0.90328 0.84786 0.87311 0.87412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.42 9.20 37.16 0.34 -1.08 16 2 C 0.15 1.29 3.47 -67.93 -0.24 1.06 16 3 C -0.17 -1.47 9.20 37.16 0.34 -1.13 16 4 N -0.62 -6.26 2.83 -164.81 -0.47 -6.73 16 5 C 0.10 0.86 7.03 -3.12 -0.02 0.84 16 6 C 0.14 1.69 3.48 -66.30 -0.23 1.46 16 7 H 0.11 1.49 7.63 -51.93 -0.40 1.09 16 8 N -0.73 -10.32 5.12 -53.15 -0.27 -10.59 16 9 C 0.57 11.33 7.77 -12.31 -0.10 11.23 16 10 O -0.54 -12.55 16.02 5.32 0.09 -12.47 16 11 C -0.13 -2.86 5.87 -105.04 -0.62 -3.47 16 12 C -0.22 -4.27 9.55 -38.92 -0.37 -4.64 16 13 C -0.10 -1.97 10.01 -39.72 -0.40 -2.37 16 14 C -0.21 -4.83 9.78 -38.81 -0.38 -5.21 16 15 C 0.10 2.52 5.57 -106.87 -0.60 1.92 16 16 C -0.46 -11.75 9.05 -37.73 -0.34 -12.10 16 17 H 0.08 1.97 7.91 -52.48 -0.41 1.55 16 18 C 0.07 1.81 5.14 -17.35 -0.09 1.72 16 19 N -0.78 -20.21 10.95 55.55 0.61 -19.61 16 20 Si 0.91 18.41 29.59 -169.99 -5.03 13.38 16 21 H -0.26 -5.22 7.11 56.52 0.40 -4.82 16 22 H -0.28 -5.50 7.11 56.52 0.40 -5.10 16 23 H -0.26 -5.28 7.11 56.52 0.40 -4.88 16 24 C -0.09 -2.32 8.24 -38.44 -0.32 -2.63 16 25 C -0.17 -2.15 6.60 -26.71 -0.18 -2.32 16 26 C 0.53 6.82 7.41 -10.83 -0.08 6.74 16 27 O -0.53 -8.48 15.12 5.55 0.08 -8.39 16 28 H 0.07 0.80 6.77 -51.93 -0.35 0.45 16 29 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.09 0.56 8.07 -51.93 -0.42 0.14 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.07 0.81 6.80 -51.93 -0.35 0.46 16 35 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.08 0.57 7.78 -51.93 -0.40 0.16 16 37 H 0.40 4.75 6.41 -40.82 -0.26 4.49 16 38 H 0.09 1.39 6.38 -52.49 -0.33 1.05 16 39 H 0.09 1.59 8.06 -52.49 -0.42 1.16 16 40 H 0.10 2.05 8.06 -52.48 -0.42 1.62 16 41 H 0.29 6.80 8.30 -40.82 -0.34 6.46 16 42 H 0.13 3.73 5.74 -52.49 -0.30 3.43 16 43 H 0.11 1.34 8.08 -51.93 -0.42 0.92 16 44 H 0.11 1.47 8.14 -51.93 -0.42 1.05 16 LS Contribution 363.15 15.07 5.47 5.47 Total: -1.00 -30.32 363.15 -8.96 -39.28 By element: Atomic # 1 Polarization: 15.80 SS G_CDS: -6.17 Total: 9.63 kcal Atomic # 6 Polarization: -6.71 SS G_CDS: -3.26 Total: -9.98 kcal Atomic # 7 Polarization: -36.80 SS G_CDS: -0.13 Total: -36.93 kcal Atomic # 8 Polarization: -21.03 SS G_CDS: 0.17 Total: -20.86 kcal Atomic # 14 Polarization: 18.41 SS G_CDS: -5.03 Total: 13.38 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -30.32 -8.96 -39.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263903167.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.832 kcal (2) G-P(sol) polarization free energy of solvation -30.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds