Wall clock time and date at job start Tue Mar 31 2020 11:19:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47354 * 2 1 4 4 N 1.46503 * 109.47104 * 120.00620 * 2 1 3 5 5 C 1.46768 * 124.35073 * 120.00088 * 4 2 1 6 6 C 1.54476 * 105.47127 * 162.95958 * 5 4 2 7 7 H 1.09001 * 110.96885 * 267.25711 * 6 5 4 8 8 N 1.46503 * 110.96924 * 143.53470 * 6 5 4 9 9 C 1.34771 * 120.00350 * 158.08819 * 8 6 5 10 10 O 1.21551 * 119.99977 * 359.97438 * 9 8 6 11 11 C 1.47888 * 120.00078 * 179.97438 * 9 8 6 12 12 C 1.39914 * 120.02616 * 0.02562 * 11 9 8 13 13 C 1.38327 * 120.36149 * 179.97438 * 12 11 9 14 14 C 1.37757 * 120.41025 * 359.71794 * 13 12 11 15 15 C 1.40751 * 120.03634 * 0.55817 * 14 13 12 16 16 C 1.41440 * 120.17817 * 179.71635 * 15 14 13 17 17 H 1.08003 * 119.99659 * 335.22609 * 16 15 14 18 18 C 1.39931 * 120.00424 * 154.95541 * 16 15 14 19 19 N 1.30828 * 119.99804 * 342.54231 * 18 16 15 20 20 Si 1.86798 * 120.00560 * 162.53952 * 18 16 15 21 21 H 1.48498 * 109.47042 * 59.99674 * 20 18 16 22 22 H 1.48497 * 109.47326 * 180.02562 * 20 18 16 23 23 H 1.48508 * 109.46757 * 300.00200 * 20 18 16 24 24 C 1.38994 * 120.02174 * 180.02562 * 11 9 8 25 25 C 1.54628 * 101.80362 * 25.39471 * 6 5 4 26 26 C 1.34420 * 124.34822 * 299.96792 * 4 2 1 27 27 O 1.21285 * 124.94080 * 0.44496 * 26 4 2 28 28 H 1.09004 * 109.46538 * 299.99868 * 1 2 3 29 29 H 1.08997 * 109.46970 * 59.99555 * 1 2 3 30 30 H 1.09005 * 109.47127 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46755 * 239.99637 * 2 1 3 32 32 H 1.09000 * 109.46968 * 179.97438 * 3 2 1 33 33 H 1.08997 * 109.47445 * 300.00154 * 3 2 1 34 34 H 1.08998 * 109.46798 * 60.00316 * 3 2 1 35 35 H 1.08997 * 110.24716 * 43.95595 * 5 4 2 36 36 H 1.09006 * 110.31454 * 281.99343 * 5 4 2 37 37 H 0.97001 * 119.99834 * 338.07965 * 8 6 5 38 38 H 1.08000 * 119.82058 * 359.95679 * 12 11 9 39 39 H 1.07997 * 119.80123 * 180.02562 * 13 12 11 40 40 H 1.08004 * 119.98375 * 180.27774 * 14 13 12 41 41 H 0.96999 * 120.00693 * 180.02562 * 19 18 16 42 42 H 1.07997 * 120.20583 * 359.97438 * 24 11 9 43 43 H 1.09002 * 110.48616 * 93.89624 * 25 6 5 44 44 H 1.08997 * 110.48630 * 216.54439 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6908 1.1961 5 6 2.8656 -1.8889 1.1726 6 6 3.4728 -1.9922 2.5893 7 1 4.4409 -1.4935 2.6360 8 7 3.5857 -3.3907 3.0107 9 6 4.4608 -3.7352 3.9760 10 8 5.1568 -2.8855 4.4967 11 6 4.5743 -5.1469 4.4017 12 6 3.7738 -6.1254 3.8024 13 6 3.8746 -7.4480 4.1949 14 6 4.7680 -7.8181 5.1760 15 6 5.5775 -6.8468 5.7944 16 6 6.4915 -7.2225 6.8063 17 1 6.3179 -8.1173 7.3857 18 6 7.6237 -6.4381 7.0529 19 7 8.0272 -5.5725 6.1587 20 14 8.5591 -6.6267 8.6588 21 1 9.0550 -8.0210 8.7820 22 1 9.7099 -5.6883 8.6745 23 1 7.6556 -6.3203 9.7968 24 6 5.4763 -5.5026 5.3976 25 6 2.4219 -1.2411 3.4393 26 6 1.7485 -0.3082 2.4562 27 8 1.0649 0.6462 2.7610 28 1 -0.3632 0.5138 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 3.1300 1.4424 0.0005 33 1 1.6767 1.9563 -0.8899 34 1 1.6768 1.9562 0.8900 35 1 3.6562 -1.7774 0.4305 36 1 2.2657 -2.7724 0.9541 37 1 3.0304 -4.0688 2.5950 38 1 3.0731 -5.8466 3.0293 39 1 3.2526 -8.1960 3.7259 40 1 4.8442 -8.8534 5.4740 41 1 8.8122 -5.0289 6.3294 42 1 6.0965 -4.7506 5.8627 43 1 1.6986 -1.9412 3.8575 44 1 2.9080 -0.6738 4.2329 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000263903167.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:19:22 Heat of formation + Delta-G solvation = -73.940266 kcal Electronic energy + Delta-G solvation = -25784.559123 eV Core-core repulsion = 22086.318680 eV Total energy + Delta-G solvation = -3698.240443 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.86588 -40.67297 -38.84180 -37.66567 -36.51781 -35.59715 -34.20347 -32.02258 -31.25217 -30.25968 -28.46718 -28.11122 -27.15316 -24.65799 -23.46864 -22.88468 -22.38492 -21.33731 -19.93965 -19.52500 -18.04771 -17.85740 -17.56335 -16.86522 -16.73263 -16.40957 -15.98807 -15.87717 -15.27322 -15.04516 -15.03188 -14.73532 -14.63049 -14.47604 -14.34452 -14.22799 -13.70714 -13.46647 -13.12223 -12.98445 -12.93914 -12.84209 -12.78773 -12.51132 -12.37682 -12.21132 -12.17449 -12.11934 -11.87856 -11.48655 -11.05245 -10.95421 -10.73411 -10.16667 -9.77745 -9.45064 -9.35163 -8.65049 -6.36247 0.39843 1.04040 1.37029 1.47014 1.48361 1.50998 1.80489 2.09971 2.20046 2.21082 2.79931 3.28472 3.43982 3.70909 3.75568 3.92928 4.00529 4.07944 4.11028 4.30713 4.46095 4.50074 4.53809 4.63361 4.71896 4.73065 4.78608 4.83032 4.88161 4.91689 4.95535 5.11058 5.22237 5.23557 5.31345 5.33644 5.42136 5.54802 5.64570 5.88741 5.95265 6.04788 6.08141 6.31898 6.51447 6.69220 6.90256 6.96970 7.08475 7.30649 8.31308 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.024041 B = 0.002695 C = 0.002531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.408046 B =10385.344123 C =11060.886659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.146 3.854 3 C -0.166 4.166 4 N -0.608 5.608 5 C 0.107 3.893 6 C 0.139 3.861 7 H 0.093 0.907 8 N -0.699 5.699 9 C 0.568 3.432 10 O -0.583 6.583 11 C -0.138 4.138 12 C -0.192 4.192 13 C -0.097 4.097 14 C -0.217 4.217 15 C 0.065 3.935 16 C -0.499 4.499 17 H 0.082 0.918 18 C 0.031 3.969 19 N -0.824 5.824 20 Si 0.979 3.021 21 H -0.253 1.253 22 H -0.272 1.272 23 H -0.262 1.262 24 C -0.131 4.131 25 C -0.169 4.169 26 C 0.522 3.478 27 O -0.567 6.567 28 H 0.039 0.961 29 H 0.087 0.913 30 H 0.063 0.937 31 H 0.124 0.876 32 H 0.057 0.943 33 H 0.088 0.912 34 H 0.039 0.961 35 H 0.114 0.886 36 H 0.108 0.892 37 H 0.418 0.582 38 H 0.144 0.856 39 H 0.139 0.861 40 H 0.105 0.895 41 H 0.286 0.714 42 H 0.098 0.902 43 H 0.114 0.886 44 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.077 5.667 -15.046 19.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.045 3.955 3 C -0.224 4.224 4 N -0.342 5.342 5 C -0.016 4.016 6 C 0.033 3.967 7 H 0.112 0.888 8 N -0.353 5.353 9 C 0.358 3.642 10 O -0.463 6.463 11 C -0.142 4.142 12 C -0.211 4.211 13 C -0.115 4.115 14 C -0.237 4.237 15 C 0.063 3.937 16 C -0.529 4.529 17 H 0.100 0.900 18 C -0.184 4.184 19 N -0.450 5.450 20 Si 0.800 3.200 21 H -0.177 1.177 22 H -0.197 1.197 23 H -0.187 1.187 24 C -0.151 4.151 25 C -0.211 4.211 26 C 0.310 3.690 27 O -0.446 6.446 28 H 0.058 0.942 29 H 0.106 0.894 30 H 0.082 0.918 31 H 0.142 0.858 32 H 0.077 0.923 33 H 0.107 0.893 34 H 0.058 0.942 35 H 0.132 0.868 36 H 0.126 0.874 37 H 0.258 0.742 38 H 0.161 0.839 39 H 0.157 0.843 40 H 0.124 0.876 41 H 0.097 0.903 42 H 0.116 0.884 43 H 0.132 0.868 44 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -10.782 6.966 -14.704 19.519 hybrid contribution 0.609 -0.156 1.062 1.234 sum -10.173 6.810 -13.642 18.330 Atomic orbital electron populations 1.22147 0.94641 1.02601 1.02743 1.21242 0.94570 0.93087 0.86601 1.22169 1.01370 0.96100 1.02773 1.48538 1.50779 1.28997 1.05871 1.22430 0.95099 0.88492 0.95589 1.21652 0.98943 0.82333 0.93788 0.88845 1.45544 1.41357 1.09077 1.39363 1.18671 0.78485 0.88408 0.78661 1.90703 1.46007 1.52813 1.56814 1.19735 1.01230 0.92244 1.00957 1.20890 1.03264 0.92552 1.04424 1.20943 0.97706 0.96231 0.96631 1.21423 1.03000 0.97900 1.01372 1.17944 0.92290 0.91387 0.92102 1.19827 1.05863 1.09956 1.17225 0.90001 1.26793 0.98030 0.93069 1.00528 1.69868 1.21894 1.18972 1.34283 0.85289 0.77503 0.79585 0.77616 1.17688 1.19706 1.18659 1.21457 0.98467 0.96436 0.98756 1.22835 0.99837 0.99579 0.98817 1.20852 0.79510 0.83995 0.84660 1.90668 1.41293 1.30480 1.82198 0.94174 0.89401 0.91834 0.85788 0.92344 0.89277 0.94202 0.86828 0.87437 0.74195 0.83871 0.84338 0.87643 0.90342 0.88376 0.86807 0.89422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.34 9.20 71.98 0.66 -1.68 16 2 C 0.15 1.99 3.47 44.99 0.16 2.15 16 3 C -0.17 -2.58 9.20 71.98 0.66 -1.91 16 4 N -0.61 -10.63 2.83 -793.94 -2.25 -12.88 16 5 C 0.11 1.41 7.03 86.83 0.61 2.02 16 6 C 0.14 3.08 3.48 46.05 0.16 3.24 16 7 H 0.09 2.47 7.63 -2.39 -0.02 2.45 16 8 N -0.70 -17.89 5.12 -440.36 -2.25 -20.15 16 9 C 0.57 22.38 7.77 86.80 0.67 23.06 16 10 O -0.58 -28.14 16.02 -3.88 -0.06 -28.20 16 11 C -0.14 -6.05 5.87 -20.13 -0.12 -6.17 16 12 C -0.19 -6.75 9.55 22.70 0.22 -6.53 16 13 C -0.10 -3.57 10.01 22.18 0.22 -3.35 16 14 C -0.22 -9.76 9.78 22.77 0.22 -9.54 16 15 C 0.06 3.44 5.57 -21.32 -0.12 3.32 16 16 C -0.50 -26.82 9.05 23.47 0.21 -26.61 16 17 H 0.08 4.16 7.91 -2.91 -0.02 4.14 16 18 C 0.03 1.59 5.14 85.25 0.44 2.03 16 19 N -0.82 -45.30 10.95 21.82 0.24 -45.06 16 20 Si 0.98 39.36 29.59 68.60 2.03 41.39 16 21 H -0.25 -9.56 7.11 99.48 0.71 -8.86 16 22 H -0.27 -10.58 7.11 99.48 0.71 -9.87 16 23 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16 24 C -0.13 -6.98 8.24 23.01 0.19 -6.79 16 25 C -0.17 -4.18 6.60 30.61 0.20 -3.97 16 26 C 0.52 13.17 7.41 87.92 0.65 13.82 16 27 O -0.57 -18.52 15.12 -3.04 -0.05 -18.57 16 28 H 0.04 0.85 6.77 -2.39 -0.02 0.84 16 29 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.06 0.83 8.14 -2.38 -0.02 0.81 16 31 H 0.12 0.89 8.07 -2.39 -0.02 0.87 16 32 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.04 0.89 6.80 -2.39 -0.02 0.87 16 35 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.11 0.89 7.78 -2.38 -0.02 0.87 16 37 H 0.42 7.75 6.41 -92.71 -0.59 7.16 16 38 H 0.14 3.47 6.38 -2.91 -0.02 3.45 16 39 H 0.14 3.88 8.06 -2.91 -0.02 3.86 16 40 H 0.11 4.41 8.06 -2.91 -0.02 4.39 16 41 H 0.29 14.55 8.30 -92.71 -0.77 13.78 16 42 H 0.10 5.90 5.74 -2.91 -0.02 5.89 16 43 H 0.11 2.67 8.08 -2.39 -0.02 2.65 16 44 H 0.09 2.52 8.14 -2.39 -0.02 2.50 16 Total: -1.00 -73.71 363.15 3.13 -70.58 By element: Atomic # 1 Polarization: 29.39 SS G_CDS: 0.43 Total: 29.82 kcal Atomic # 6 Polarization: -21.97 SS G_CDS: 5.04 Total: -16.93 kcal Atomic # 7 Polarization: -73.82 SS G_CDS: -4.26 Total: -78.09 kcal Atomic # 8 Polarization: -46.67 SS G_CDS: -0.11 Total: -46.77 kcal Atomic # 14 Polarization: 39.36 SS G_CDS: 2.03 Total: 41.39 kcal Total: -73.71 3.13 -70.58 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263903167.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.358 kcal (2) G-P(sol) polarization free energy of solvation -73.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds