Wall clock time and date at job start Tue Mar 31 2020 11:22:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50702 * 119.99699 * 2 1 4 4 N 1.46508 * 109.47230 * 124.99840 * 3 2 1 5 5 C 1.34778 * 119.99790 * 269.99803 * 4 3 2 6 6 O 1.21586 * 119.99961 * 4.99311 * 5 4 3 7 7 N 1.34771 * 119.99593 * 184.98691 * 5 4 3 8 8 C 1.46507 * 119.99924 * 185.04823 * 7 5 4 9 9 C 1.50696 * 109.47232 * 180.02562 * 8 7 5 10 10 C 1.38303 * 119.92832 * 269.72915 * 9 8 7 11 11 C 1.38103 * 120.06587 * 179.72457 * 10 9 8 12 12 C 1.38884 * 119.93030 * 0.57256 * 11 10 9 13 13 O 1.35751 * 120.06678 * 179.68261 * 12 11 10 14 14 C 1.34834 * 116.99709 * 174.46947 * 13 12 11 15 15 H 1.07997 * 119.99809 * 5.05669 * 14 13 12 16 16 C 1.38647 * 119.99895 * 185.05791 * 14 13 12 17 17 N 1.31553 * 120.00150 * 180.02562 * 16 14 13 18 18 Si 1.86804 * 120.00084 * 359.97438 * 16 14 13 19 19 H 1.48504 * 109.46695 * 90.00253 * 18 16 14 20 20 H 1.48500 * 109.46957 * 209.99918 * 18 16 14 21 21 H 1.48495 * 109.47081 * 329.99991 * 18 16 14 22 22 C 1.38881 * 119.86098 * 359.69968 * 12 11 10 23 23 C 1.38098 * 119.93118 * 0.02562 * 22 12 11 24 24 C 1.46496 * 119.99851 * 90.00058 * 4 3 2 25 25 C 1.53002 * 117.50019 * 2.78733 * 24 4 3 26 26 C 1.52999 * 117.49868 * 294.16223 * 24 4 3 27 27 H 1.08003 * 119.99195 * 180.02562 * 1 2 3 28 28 H 1.07994 * 120.00179 * 359.72838 * 1 2 3 29 29 H 1.07994 * 120.00648 * 179.97438 * 2 1 3 30 30 H 1.09003 * 109.47167 * 244.99778 * 3 2 1 31 31 H 1.09004 * 109.47346 * 5.00134 * 3 2 1 32 32 H 0.96999 * 120.00487 * 5.05381 * 7 5 4 33 33 H 1.08996 * 109.47092 * 300.00730 * 8 7 5 34 34 H 1.09003 * 109.46868 * 60.00022 * 8 7 5 35 35 H 1.08004 * 119.96942 * 359.97438 * 10 9 8 36 36 H 1.08004 * 120.03611 * 180.26962 * 11 10 9 37 37 H 0.96999 * 120.00460 * 179.97438 * 17 16 14 38 38 H 1.07992 * 120.03253 * 179.97438 * 22 12 11 39 39 H 1.08000 * 119.96804 * 180.02562 * 23 22 12 40 40 H 1.09000 * 115.54757 * 148.49465 * 24 4 3 41 41 H 1.08999 * 117.49846 * 359.97438 * 25 24 4 42 42 H 1.08997 * 117.49568 * 145.01970 * 25 24 4 43 43 H 1.08999 * 117.49922 * 214.98093 * 26 24 4 44 44 H 1.08998 * 117.49967 * 359.97438 * 26 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9937 1.3320 1.1315 5 6 2.5935 1.8225 2.3214 6 8 1.4361 2.1582 2.4823 7 7 3.4763 1.9406 3.3328 8 6 3.0197 2.3686 4.6575 9 6 4.1936 2.4201 5.6011 10 6 4.5343 1.3018 6.3402 11 6 5.6130 1.3441 7.2015 12 6 6.3485 2.5147 7.3340 13 8 7.4054 2.5613 8.1847 14 6 8.1450 3.6887 8.1809 15 1 7.8390 4.5332 7.5812 16 6 9.2983 3.7638 8.9467 17 7 10.0196 4.8639 8.9434 18 14 9.8272 2.3033 9.9844 19 1 10.7142 1.4221 9.1830 20 1 10.5604 2.7865 11.1819 21 1 8.6275 1.5402 10.4129 22 6 6.0003 3.6376 6.5946 23 6 4.9241 3.5872 5.7307 24 6 4.3589 0.8259 0.9695 25 6 4.7728 0.3429 -0.4220 26 6 4.5301 -0.6702 0.6986 27 1 -0.5399 -0.9354 0.0004 28 1 -0.5400 0.9352 0.0044 29 1 1.8501 -0.9352 0.0004 30 1 2.6213 1.4027 -0.9314 31 1 1.3585 2.1317 0.0896 32 1 4.4141 1.7423 3.1838 33 1 2.5692 3.3583 4.5842 34 1 2.2814 1.6603 5.0336 35 1 3.9588 0.3934 6.2406 36 1 5.8813 0.4693 7.7752 37 1 10.8263 4.9166 9.4794 38 1 6.5701 4.5494 6.6957 39 1 4.6530 4.4600 5.1551 40 1 5.1177 1.3172 1.5784 41 1 4.0292 0.4013 -1.2169 42 1 5.8042 0.5166 -0.7288 43 1 5.4019 -1.1630 1.1290 44 1 3.6271 -1.2779 0.6414 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271564558.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:22:08 Heat of formation + Delta-G solvation = 29.954003 kcal Electronic energy + Delta-G solvation = -25340.646916 eV Core-core repulsion = 21646.911667 eV Total energy + Delta-G solvation = -3693.735250 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.48491 -39.30956 -37.88502 -36.98809 -35.12731 -34.17172 -32.66289 -32.41381 -30.39367 -30.00154 -27.00088 -25.70959 -24.31075 -22.92653 -22.61184 -22.18123 -20.65242 -20.36123 -19.60350 -18.69194 -17.98031 -17.36641 -16.60806 -15.89327 -15.44949 -15.16516 -14.93574 -14.74559 -14.53781 -14.22964 -14.00450 -13.89877 -13.61371 -13.41251 -12.99936 -12.84498 -12.72310 -12.31921 -12.25002 -12.10011 -11.77635 -11.48670 -11.39472 -11.15568 -11.00377 -10.94776 -10.83276 -10.77075 -10.23209 -10.15882 -9.65713 -9.48980 -9.06556 -8.96083 -8.55775 -8.37910 -7.48780 -6.50628 -4.17657 1.81758 2.02031 2.02606 2.75138 3.08054 3.16171 3.19827 3.34122 3.53468 3.83427 4.15933 4.38478 4.47221 4.51767 4.57010 4.71126 4.74504 4.88699 4.95522 5.01341 5.16051 5.31567 5.37701 5.41656 5.48973 5.57034 5.59384 5.69092 5.75067 5.76983 5.87735 6.02843 6.25133 6.25421 6.36250 6.45010 6.47214 6.58584 6.67886 6.83097 6.94572 7.13036 7.19184 7.49607 7.70102 7.92846 7.94424 8.57895 8.83962 9.44732 10.56544 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.022687 B = 0.002467 C = 0.002378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.917919 B =11348.063965 C =11772.813631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.179 4.179 3 C 0.157 3.843 4 N -0.601 5.601 5 C 0.709 3.291 6 O -0.589 6.589 7 N -0.736 5.736 8 C 0.195 3.805 9 C -0.205 4.205 10 C -0.055 4.055 11 C -0.195 4.195 12 C 0.167 3.833 13 O -0.213 6.213 14 C -0.392 4.392 15 H 0.108 0.892 16 C 0.064 3.936 17 N -0.876 5.876 18 Si 0.906 3.094 19 H -0.273 1.273 20 H -0.281 1.281 21 H -0.259 1.259 22 C -0.224 4.224 23 C -0.052 4.052 24 C 0.069 3.931 25 C -0.182 4.182 26 C -0.192 4.192 27 H 0.096 0.904 28 H 0.099 0.901 29 H 0.107 0.893 30 H 0.085 0.915 31 H 0.088 0.912 32 H 0.397 0.603 33 H 0.066 0.934 34 H 0.064 0.936 35 H 0.114 0.886 36 H 0.118 0.882 37 H 0.281 0.719 38 H 0.134 0.866 39 H 0.111 0.889 40 H 0.127 0.873 41 H 0.102 0.898 42 H 0.105 0.895 43 H 0.103 0.897 44 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.595 -9.653 -17.701 23.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.198 4.198 3 C 0.034 3.966 4 N -0.336 5.336 5 C 0.411 3.589 6 O -0.467 6.467 7 N -0.392 5.392 8 C 0.072 3.928 9 C -0.206 4.206 10 C -0.074 4.074 11 C -0.215 4.215 12 C 0.114 3.886 13 O -0.117 6.117 14 C -0.467 4.467 15 H 0.125 0.875 16 C -0.140 4.140 17 N -0.513 5.513 18 Si 0.731 3.269 19 H -0.198 1.198 20 H -0.207 1.207 21 H -0.183 1.183 22 C -0.243 4.243 23 C -0.070 4.070 24 C -0.036 4.036 25 C -0.219 4.219 26 C -0.231 4.231 27 H 0.114 0.886 28 H 0.118 0.882 29 H 0.125 0.875 30 H 0.103 0.897 31 H 0.107 0.893 32 H 0.233 0.767 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.132 0.868 36 H 0.136 0.864 37 H 0.091 0.909 38 H 0.152 0.848 39 H 0.129 0.871 40 H 0.144 0.856 41 H 0.120 0.880 42 H 0.123 0.877 43 H 0.121 0.879 44 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -12.165 -9.403 -17.268 23.121 hybrid contribution 0.950 -0.585 0.390 1.182 sum -11.215 -9.988 -16.878 22.592 Atomic orbital electron populations 1.23871 0.95903 1.01970 0.98729 1.23330 0.96378 0.98667 1.01437 1.20453 0.91774 0.96189 0.88184 1.46580 1.11276 1.65259 1.10486 1.15859 0.84850 0.78355 0.79867 1.90906 1.17257 1.56722 1.81838 1.45574 1.10747 1.72845 1.10016 1.19854 0.93933 0.99910 0.79064 1.19299 1.01465 0.95531 1.04341 1.20543 0.95261 0.96913 0.94698 1.20214 0.99239 0.96937 1.05075 1.19185 0.87824 0.93217 0.88422 1.83577 1.35723 1.40347 1.52084 1.20785 1.04968 0.90907 1.30026 0.87498 1.24486 0.94548 0.97869 0.97047 1.69639 1.15589 1.26292 1.39751 0.86176 0.79445 0.81763 0.79506 1.19822 1.20686 1.18313 1.21279 1.01075 0.99958 1.02019 1.20711 0.93653 0.96444 0.96234 1.21660 0.85236 0.95773 1.00945 1.23326 1.03126 1.03546 0.91933 1.23501 1.03899 0.92908 1.02824 0.88560 0.88237 0.87536 0.89673 0.89326 0.76740 0.91562 0.91748 0.86786 0.86390 0.90909 0.84805 0.87079 0.85583 0.87977 0.87661 0.87908 0.88376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.47 14.32 29.01 0.42 -1.05 16 2 C -0.18 -1.60 9.63 -36.02 -0.35 -1.95 16 3 C 0.16 1.46 5.35 -5.19 -0.03 1.43 16 4 N -0.60 -6.43 2.79 -173.16 -0.48 -6.91 16 5 C 0.71 9.88 8.26 -86.92 -0.72 9.16 16 6 O -0.59 -10.22 15.98 5.29 0.08 -10.13 16 7 N -0.74 -9.47 5.44 -66.41 -0.36 -9.83 16 8 C 0.20 2.72 5.80 -5.19 -0.03 2.69 16 9 C -0.20 -3.16 5.25 -104.58 -0.55 -3.71 16 10 C -0.06 -0.87 9.69 -39.61 -0.38 -1.25 16 11 C -0.20 -3.62 9.99 -39.39 -0.39 -4.01 16 12 C 0.17 3.64 6.65 -39.10 -0.26 3.38 16 13 O -0.21 -5.40 8.59 0.03 0.00 -5.40 16 14 C -0.39 -10.66 9.95 30.88 0.31 -10.35 16 15 H 0.11 2.97 5.44 -52.49 -0.29 2.68 16 16 C 0.06 1.76 5.49 -17.52 -0.10 1.66 16 17 N -0.88 -24.63 13.96 55.48 0.77 -23.86 16 18 Si 0.91 21.03 28.62 -169.99 -4.86 16.16 16 19 H -0.27 -6.21 7.11 56.52 0.40 -5.80 16 20 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 21 H -0.26 -6.04 7.11 56.52 0.40 -5.64 16 22 C -0.22 -4.55 9.17 -39.39 -0.36 -4.91 16 23 C -0.05 -0.87 9.69 -39.61 -0.38 -1.26 16 24 C 0.07 0.58 5.98 -67.93 -0.41 0.17 16 25 C -0.18 -1.15 9.74 -26.73 -0.26 -1.41 16 26 C -0.19 -1.39 10.28 -26.73 -0.27 -1.66 16 27 H 0.10 0.72 8.06 -52.48 -0.42 0.30 16 28 H 0.10 0.90 7.84 -52.49 -0.41 0.48 16 29 H 0.11 0.88 6.31 -52.49 -0.33 0.55 16 30 H 0.09 0.60 5.99 -51.93 -0.31 0.29 16 31 H 0.09 0.95 7.15 -51.93 -0.37 0.58 16 32 H 0.40 4.57 6.28 -40.82 -0.26 4.31 16 33 H 0.07 0.96 8.08 -51.93 -0.42 0.54 16 34 H 0.06 0.90 8.08 -51.93 -0.42 0.48 16 35 H 0.11 1.52 8.06 -52.48 -0.42 1.09 16 36 H 0.12 2.04 8.06 -52.48 -0.42 1.62 16 37 H 0.28 7.29 8.31 -40.82 -0.34 6.95 16 38 H 0.13 2.88 5.64 -52.49 -0.30 2.59 16 39 H 0.11 1.66 8.06 -52.49 -0.42 1.24 16 40 H 0.13 1.01 6.59 -51.93 -0.34 0.67 16 41 H 0.10 0.59 6.11 -51.93 -0.32 0.27 16 42 H 0.11 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 44 H 0.10 0.75 6.28 -51.93 -0.33 0.43 16 LS Contribution 368.55 15.07 5.55 5.55 Total: -1.00 -30.56 368.55 -8.82 -39.38 By element: Atomic # 1 Polarization: 13.86 SS G_CDS: -5.76 Total: 8.10 kcal Atomic # 6 Polarization: -9.30 SS G_CDS: -3.77 Total: -13.07 kcal Atomic # 7 Polarization: -40.53 SS G_CDS: -0.07 Total: -40.60 kcal Atomic # 8 Polarization: -15.62 SS G_CDS: 0.08 Total: -15.53 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -4.86 Total: 16.16 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -30.56 -8.82 -39.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271564558.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.333 kcal (2) G-P(sol) polarization free energy of solvation -30.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.379 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds