Wall clock time and date at job start Tue Mar 31 2020 11:22:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50702 * 119.99699 * 2 1 4 4 N 1.46508 * 109.47230 * 124.99840 * 3 2 1 5 5 C 1.34778 * 119.99790 * 269.99803 * 4 3 2 6 6 O 1.21586 * 119.99961 * 4.99311 * 5 4 3 7 7 N 1.34771 * 119.99593 * 184.98691 * 5 4 3 8 8 C 1.46507 * 119.99924 * 185.04823 * 7 5 4 9 9 C 1.50696 * 109.47232 * 180.02562 * 8 7 5 10 10 C 1.38303 * 119.92832 * 269.72915 * 9 8 7 11 11 C 1.38103 * 120.06587 * 179.72457 * 10 9 8 12 12 C 1.38884 * 119.93030 * 0.57256 * 11 10 9 13 13 O 1.35751 * 120.06678 * 179.68261 * 12 11 10 14 14 C 1.34834 * 116.99709 * 174.46947 * 13 12 11 15 15 H 1.07997 * 119.99809 * 5.05669 * 14 13 12 16 16 C 1.38647 * 119.99895 * 185.05791 * 14 13 12 17 17 N 1.31553 * 120.00150 * 180.02562 * 16 14 13 18 18 Si 1.86804 * 120.00084 * 359.97438 * 16 14 13 19 19 H 1.48504 * 109.46695 * 90.00253 * 18 16 14 20 20 H 1.48500 * 109.46957 * 209.99918 * 18 16 14 21 21 H 1.48495 * 109.47081 * 329.99991 * 18 16 14 22 22 C 1.38881 * 119.86098 * 359.69968 * 12 11 10 23 23 C 1.38098 * 119.93118 * 0.02562 * 22 12 11 24 24 C 1.46496 * 119.99851 * 90.00058 * 4 3 2 25 25 C 1.53002 * 117.50019 * 2.78733 * 24 4 3 26 26 C 1.52999 * 117.49868 * 294.16223 * 24 4 3 27 27 H 1.08003 * 119.99195 * 180.02562 * 1 2 3 28 28 H 1.07994 * 120.00179 * 359.72838 * 1 2 3 29 29 H 1.07994 * 120.00648 * 179.97438 * 2 1 3 30 30 H 1.09003 * 109.47167 * 244.99778 * 3 2 1 31 31 H 1.09004 * 109.47346 * 5.00134 * 3 2 1 32 32 H 0.96999 * 120.00487 * 5.05381 * 7 5 4 33 33 H 1.08996 * 109.47092 * 300.00730 * 8 7 5 34 34 H 1.09003 * 109.46868 * 60.00022 * 8 7 5 35 35 H 1.08004 * 119.96942 * 359.97438 * 10 9 8 36 36 H 1.08004 * 120.03611 * 180.26962 * 11 10 9 37 37 H 0.96999 * 120.00460 * 179.97438 * 17 16 14 38 38 H 1.07992 * 120.03253 * 179.97438 * 22 12 11 39 39 H 1.08000 * 119.96804 * 180.02562 * 23 22 12 40 40 H 1.09000 * 115.54757 * 148.49465 * 24 4 3 41 41 H 1.08999 * 117.49846 * 359.97438 * 25 24 4 42 42 H 1.08997 * 117.49568 * 145.01970 * 25 24 4 43 43 H 1.08999 * 117.49922 * 214.98093 * 26 24 4 44 44 H 1.08998 * 117.49967 * 359.97438 * 26 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9937 1.3320 1.1315 5 6 2.5935 1.8225 2.3214 6 8 1.4361 2.1582 2.4823 7 7 3.4763 1.9406 3.3328 8 6 3.0197 2.3686 4.6575 9 6 4.1936 2.4201 5.6011 10 6 4.5343 1.3018 6.3402 11 6 5.6130 1.3441 7.2015 12 6 6.3485 2.5147 7.3340 13 8 7.4054 2.5613 8.1847 14 6 8.1450 3.6887 8.1809 15 1 7.8390 4.5332 7.5812 16 6 9.2983 3.7638 8.9467 17 7 10.0196 4.8639 8.9434 18 14 9.8272 2.3033 9.9844 19 1 10.7142 1.4221 9.1830 20 1 10.5604 2.7865 11.1819 21 1 8.6275 1.5402 10.4129 22 6 6.0003 3.6376 6.5946 23 6 4.9241 3.5872 5.7307 24 6 4.3589 0.8259 0.9695 25 6 4.7728 0.3429 -0.4220 26 6 4.5301 -0.6702 0.6986 27 1 -0.5399 -0.9354 0.0004 28 1 -0.5400 0.9352 0.0044 29 1 1.8501 -0.9352 0.0004 30 1 2.6213 1.4027 -0.9314 31 1 1.3585 2.1317 0.0896 32 1 4.4141 1.7423 3.1838 33 1 2.5692 3.3583 4.5842 34 1 2.2814 1.6603 5.0336 35 1 3.9588 0.3934 6.2406 36 1 5.8813 0.4693 7.7752 37 1 10.8263 4.9166 9.4794 38 1 6.5701 4.5494 6.6957 39 1 4.6530 4.4600 5.1551 40 1 5.1177 1.3172 1.5784 41 1 4.0292 0.4013 -1.2169 42 1 5.8042 0.5166 -0.7288 43 1 5.4019 -1.1630 1.1290 44 1 3.6271 -1.2779 0.6414 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271564558.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:22:08 Heat of formation + Delta-G solvation = 12.637215 kcal Electronic energy + Delta-G solvation = -25341.397828 eV Core-core repulsion = 21646.911667 eV Total energy + Delta-G solvation = -3694.486162 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.46931 -40.88055 -38.92400 -38.35166 -36.03747 -35.19887 -34.44767 -33.43745 -31.87857 -31.35735 -28.13701 -27.22631 -25.66884 -23.72614 -23.63326 -23.23291 -22.11897 -21.16896 -20.43462 -19.87477 -19.55762 -19.07814 -17.55207 -16.89648 -16.60889 -16.46438 -16.05096 -15.83716 -15.71176 -15.61177 -15.50544 -15.18968 -14.84707 -14.55912 -14.31524 -14.22317 -14.07239 -13.61094 -13.41857 -13.10399 -12.94782 -12.58129 -12.55254 -12.45779 -12.31198 -12.01089 -11.93785 -11.79091 -11.73716 -11.30566 -11.12879 -10.91065 -10.36299 -10.15867 -9.84100 -9.37946 -9.10887 -8.50709 -6.23830 0.46418 0.54330 1.18361 1.32792 1.36025 1.52647 1.86825 2.08097 2.27715 2.69380 2.90608 2.94552 3.08022 3.18384 3.80944 3.83030 3.95676 3.98532 4.01095 4.07117 4.13797 4.19570 4.30514 4.44206 4.53891 4.67499 4.74340 4.80708 4.84835 4.88473 4.95087 4.97471 5.11140 5.21801 5.26048 5.33017 5.45461 5.50425 5.53978 5.68522 5.70861 5.74727 5.78763 5.87872 6.00036 6.18778 6.83401 6.95290 7.54002 7.56163 8.60530 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.022687 B = 0.002467 C = 0.002378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.917919 B =11348.063965 C =11772.813631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.182 4.182 3 C 0.153 3.847 4 N -0.595 5.595 5 C 0.704 3.296 6 O -0.628 6.628 7 N -0.730 5.730 8 C 0.201 3.799 9 C -0.173 4.173 10 C -0.043 4.043 11 C -0.190 4.190 12 C 0.130 3.870 13 O -0.241 6.241 14 C -0.400 4.400 15 H 0.083 0.917 16 C 0.011 3.989 17 N -0.922 5.922 18 Si 0.970 3.030 19 H -0.264 1.264 20 H -0.270 1.270 21 H -0.262 1.262 22 C -0.237 4.237 23 C -0.049 4.049 24 C 0.046 3.954 25 C -0.164 4.164 26 C -0.189 4.189 27 H 0.109 0.891 28 H 0.092 0.908 29 H 0.117 0.883 30 H 0.111 0.889 31 H 0.070 0.930 32 H 0.405 0.595 33 H 0.064 0.936 34 H 0.072 0.928 35 H 0.152 0.848 36 H 0.132 0.868 37 H 0.285 0.715 38 H 0.110 0.890 39 H 0.132 0.868 40 H 0.129 0.871 41 H 0.110 0.890 42 H 0.119 0.881 43 H 0.110 0.890 44 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.764 -12.276 -19.315 26.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.201 4.201 3 C 0.031 3.969 4 N -0.329 5.329 5 C 0.406 3.594 6 O -0.509 6.509 7 N -0.387 5.387 8 C 0.078 3.922 9 C -0.174 4.174 10 C -0.062 4.062 11 C -0.209 4.209 12 C 0.081 3.919 13 O -0.148 6.148 14 C -0.476 4.476 15 H 0.100 0.900 16 C -0.188 4.188 17 N -0.562 5.562 18 Si 0.792 3.208 19 H -0.189 1.189 20 H -0.194 1.194 21 H -0.186 1.186 22 C -0.256 4.256 23 C -0.068 4.068 24 C -0.058 4.058 25 C -0.202 4.202 26 C -0.227 4.227 27 H 0.128 0.872 28 H 0.110 0.890 29 H 0.135 0.865 30 H 0.128 0.872 31 H 0.088 0.912 32 H 0.242 0.758 33 H 0.082 0.918 34 H 0.091 0.909 35 H 0.170 0.830 36 H 0.150 0.850 37 H 0.095 0.905 38 H 0.127 0.873 39 H 0.150 0.850 40 H 0.147 0.853 41 H 0.128 0.872 42 H 0.137 0.863 43 H 0.129 0.871 44 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -13.342 -12.053 -18.940 26.115 hybrid contribution 0.995 0.182 0.607 1.180 sum -12.347 -11.871 -18.333 25.089 Atomic orbital electron populations 1.24004 0.96130 1.02340 0.98575 1.23387 0.96439 0.98763 1.01552 1.20578 0.91761 0.95880 0.88698 1.46581 1.12398 1.64292 1.09606 1.16004 0.84321 0.78371 0.80705 1.90881 1.18868 1.58475 1.82702 1.45345 1.11088 1.72760 1.09460 1.19744 0.92969 1.00281 0.79227 1.19521 1.00374 0.94561 1.02960 1.20930 0.94121 0.98259 0.92875 1.20510 0.99125 0.96108 1.05204 1.19730 0.87924 0.95021 0.89268 1.83525 1.37353 1.39406 1.54543 1.20707 1.05690 0.91222 1.29960 0.89972 1.25287 0.94606 1.00548 0.98380 1.69725 1.16611 1.28219 1.41648 0.85220 0.78873 0.78444 0.78218 1.18934 1.19439 1.18605 1.21255 1.02221 0.98964 1.03208 1.20902 0.92503 0.97998 0.95391 1.21862 0.83984 0.96858 1.03121 1.23423 1.04077 1.01629 0.91058 1.23517 1.04060 0.92031 1.03112 0.87228 0.88969 0.86500 0.87171 0.91153 0.75785 0.91769 0.90947 0.82991 0.85007 0.90544 0.87251 0.85025 0.85346 0.87212 0.86283 0.87129 0.88711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.79 14.32 67.78 0.97 -1.82 16 2 C -0.18 -2.90 9.63 25.65 0.25 -2.66 16 3 C 0.15 2.57 5.35 85.63 0.46 3.03 16 4 N -0.59 -11.45 2.79 -820.03 -2.28 -13.74 16 5 C 0.70 18.27 8.26 179.06 1.48 19.75 16 6 O -0.63 -21.02 15.98 -3.99 -0.06 -21.08 16 7 N -0.73 -16.82 5.44 -482.30 -2.62 -19.45 16 8 C 0.20 4.99 5.80 85.63 0.50 5.49 16 9 C -0.17 -4.81 5.25 -19.83 -0.10 -4.91 16 10 C -0.04 -1.21 9.69 22.25 0.22 -0.99 16 11 C -0.19 -6.67 9.99 22.39 0.22 -6.45 16 12 C 0.13 5.74 6.65 22.58 0.15 5.89 16 13 O -0.24 -12.58 8.59 -22.79 -0.20 -12.78 16 14 C -0.40 -22.85 9.95 67.92 0.68 -22.18 16 15 H 0.08 4.93 5.44 -2.91 -0.02 4.91 16 16 C 0.01 0.59 5.49 84.83 0.47 1.06 16 17 N -0.92 -54.03 13.96 21.61 0.30 -53.73 16 18 Si 0.97 44.20 28.62 68.60 1.96 46.16 16 19 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 20 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 21 H -0.26 -11.87 7.11 99.48 0.71 -11.16 16 22 C -0.24 -9.83 9.17 22.39 0.21 -9.62 16 23 C -0.05 -1.60 9.69 22.25 0.22 -1.38 16 24 C 0.05 0.64 5.98 44.99 0.27 0.91 16 25 C -0.16 -1.52 9.74 30.60 0.30 -1.23 16 26 C -0.19 -2.13 10.28 30.60 0.31 -1.82 16 27 H 0.11 1.44 8.06 -2.91 -0.02 1.42 16 28 H 0.09 1.61 7.84 -2.91 -0.02 1.58 16 29 H 0.12 1.62 6.31 -2.91 -0.02 1.60 16 30 H 0.11 1.26 5.99 -2.39 -0.01 1.24 16 31 H 0.07 1.46 7.15 -2.38 -0.02 1.44 16 32 H 0.41 8.12 6.28 -92.71 -0.58 7.54 16 33 H 0.06 1.68 8.08 -2.39 -0.02 1.66 16 34 H 0.07 1.76 8.08 -2.39 -0.02 1.74 16 35 H 0.15 3.21 8.06 -2.91 -0.02 3.19 16 36 H 0.13 4.25 8.06 -2.91 -0.02 4.22 16 37 H 0.28 15.32 8.31 -92.71 -0.77 14.55 16 38 H 0.11 5.06 5.64 -2.91 -0.02 5.04 16 39 H 0.13 3.72 8.06 -2.91 -0.02 3.69 16 40 H 0.13 1.71 6.59 -2.39 -0.02 1.69 16 41 H 0.11 0.87 6.11 -2.39 -0.01 0.85 16 42 H 0.12 0.83 8.14 -2.39 -0.02 0.81 16 43 H 0.11 1.09 8.14 -2.39 -0.02 1.08 16 44 H 0.09 1.16 6.28 -2.39 -0.02 1.15 16 Total: -1.00 -69.11 368.55 4.13 -64.98 By element: Atomic # 1 Polarization: 26.12 SS G_CDS: 0.45 Total: 26.57 kcal Atomic # 6 Polarization: -23.52 SS G_CDS: 6.58 Total: -16.94 kcal Atomic # 7 Polarization: -82.31 SS G_CDS: -4.60 Total: -86.91 kcal Atomic # 8 Polarization: -33.60 SS G_CDS: -0.26 Total: -33.86 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 1.96 Total: 46.16 kcal Total: -69.11 4.13 -64.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271564558.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.620 kcal (2) G-P(sol) polarization free energy of solvation -69.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.983 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds