Wall clock time and date at job start Tue Mar 31 2020 11:19:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.46831 * 2 1 4 4 N 1.46498 * 109.46778 * 119.99748 * 2 1 3 5 5 C 1.45646 * 117.70462 * 120.00701 * 4 2 1 6 6 C 1.52993 * 110.77423 * 158.07409 * 5 4 2 7 7 N 1.47273 * 108.18462 * 46.72486 * 6 5 4 8 8 C 1.34778 * 121.35076 * 118.47847 * 7 6 5 9 9 O 1.21544 * 120.00281 * 354.40004 * 8 7 6 10 10 C 1.47888 * 119.99407 * 174.40424 * 8 7 6 11 11 C 1.39919 * 120.02261 * 150.25261 * 10 8 7 12 12 C 1.38328 * 120.35703 * 179.97438 * 11 10 8 13 13 C 1.37754 * 120.41325 * 359.97438 * 12 11 10 14 14 C 1.40748 * 120.03960 * 359.97438 * 13 12 11 15 15 C 1.41436 * 120.17709 * 180.02562 * 14 13 12 16 16 H 1.07997 * 119.99798 * 150.05900 * 15 14 13 17 17 C 1.39932 * 119.99960 * 330.05141 * 15 14 13 18 18 N 1.30825 * 120.00376 * 167.84671 * 17 15 14 19 19 Si 1.86802 * 120.00009 * 347.84625 * 17 15 14 20 20 H 1.48497 * 109.47304 * 93.92056 * 19 17 15 21 21 H 1.48508 * 109.47139 * 213.91947 * 19 17 15 22 22 H 1.48500 * 109.46964 * 333.91685 * 19 17 15 23 23 C 1.38996 * 120.02827 * 329.96922 * 10 8 7 24 24 C 1.47050 * 117.28997 * 298.49075 * 7 6 5 25 25 C 1.33377 * 117.70475 * 299.97882 * 4 2 1 26 26 O 1.21279 * 118.49135 * 4.32355 * 25 4 2 27 27 H 1.08997 * 109.46777 * 179.97438 * 1 2 3 28 28 H 1.08989 * 109.47661 * 300.00243 * 1 2 3 29 29 H 1.09001 * 109.46745 * 60.00849 * 1 2 3 30 30 H 1.08998 * 109.47067 * 239.99821 * 2 1 3 31 31 H 1.08997 * 109.47322 * 179.97438 * 3 2 1 32 32 H 1.09001 * 109.47246 * 299.99739 * 3 2 1 33 33 H 1.08994 * 109.47641 * 59.99571 * 3 2 1 34 34 H 1.08992 * 109.21964 * 37.73984 * 5 4 2 35 35 H 1.09007 * 109.18013 * 278.38296 * 5 4 2 36 36 H 1.08994 * 109.71955 * 166.39296 * 6 5 4 37 37 H 1.08997 * 109.71736 * 287.05410 * 6 5 4 38 38 H 1.07996 * 119.82033 * 359.94804 * 11 10 8 39 39 H 1.08002 * 119.79462 * 180.02562 * 12 11 10 40 40 H 1.08000 * 119.97736 * 179.97438 * 13 12 11 41 41 H 0.97001 * 120.00922 * 180.02562 * 18 17 15 42 42 H 1.08008 * 120.19958 * 0.02562 * 23 10 8 43 43 H 1.08996 * 109.56886 * 282.91920 * 24 7 6 44 44 H 1.09002 * 109.56238 * 162.56413 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.8520 -1.8694 1.0047 6 6 3.6993 -2.1427 2.2488 7 7 2.8255 -2.0460 3.4304 8 6 2.6269 -3.1021 4.2439 9 8 3.0908 -4.1877 3.9548 10 6 1.8445 -2.9398 5.4884 11 6 1.1129 -4.0168 6.0007 12 6 0.3791 -3.8728 7.1645 13 6 0.3604 -2.6683 7.8326 14 6 1.0911 -1.5740 7.3330 15 6 1.0744 -0.3362 8.0170 16 1 1.9311 0.3195 7.9677 17 6 -0.0522 0.0389 8.7574 18 7 0.0127 1.0567 9.5769 19 14 -1.6489 -0.9135 8.5758 20 1 -1.7207 -1.9638 9.6231 21 1 -2.7986 0.0144 8.7257 22 1 -1.6967 -1.5482 7.2341 23 6 1.8402 -1.7191 6.1531 24 6 2.1784 -0.7506 3.6862 25 6 1.6686 -0.1953 2.3842 26 8 0.9049 0.7463 2.4165 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8898 29 1 -0.3633 0.5137 -0.8901 30 1 1.8934 -0.5138 -0.8899 31 1 3.1299 1.4426 0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6766 1.9564 0.8899 34 1 3.5099 -1.7086 0.1508 35 1 2.2140 -2.7312 0.8087 36 1 4.1280 -3.1430 2.1894 37 1 4.4972 -1.4035 2.3200 38 1 1.1207 -4.9654 5.4846 39 1 -0.1821 -4.7103 7.5521 40 1 -0.2153 -2.5637 8.7404 41 1 -0.7681 1.3165 10.0904 42 1 2.4068 -0.8863 5.7634 43 1 2.9021 -0.0601 4.1192 44 1 1.3452 -0.8886 4.3754 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000272771283.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:19:48 Heat of formation + Delta-G solvation = -26.705532 kcal Electronic energy + Delta-G solvation = -27121.789037 eV Core-core repulsion = 23425.596845 eV Total energy + Delta-G solvation = -3696.192191 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.00351 -39.41632 -37.52016 -36.33998 -35.69263 -33.70615 -32.55295 -30.75519 -30.54014 -29.43569 -27.26390 -27.06511 -25.30156 -24.44767 -22.89885 -21.56983 -20.86865 -19.98353 -18.59479 -17.50764 -17.37358 -16.35728 -16.11876 -15.90793 -15.78113 -15.32442 -14.87388 -14.74765 -14.16305 -14.00361 -13.75255 -13.73005 -13.30290 -13.02618 -12.73387 -12.68862 -12.53921 -12.35102 -12.23618 -12.06913 -11.80061 -11.67791 -11.48639 -11.25331 -11.20104 -11.13643 -10.81527 -10.58194 -10.00934 -9.80808 -9.78400 -9.48245 -9.18689 -8.84441 -8.57204 -7.91395 -7.80615 -7.02169 -4.62581 1.83934 2.44012 2.60476 2.72839 3.02479 3.06447 3.16290 3.23230 3.38915 3.89248 4.34379 4.39901 4.55775 4.78640 4.87318 4.92028 5.06292 5.10654 5.21075 5.21420 5.37135 5.47635 5.57083 5.59793 5.64230 5.67038 5.75249 5.83968 5.84785 6.07417 6.12201 6.24820 6.26811 6.34649 6.47170 6.54061 6.66212 6.90584 7.12228 7.26513 7.34557 7.38804 7.57145 7.64859 7.82439 8.14307 8.21006 8.40096 8.46030 8.65931 9.99884 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.013853 B = 0.004604 C = 0.003853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2020.745412 B = 6079.667285 C = 7265.481595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.138 3.862 3 C -0.169 4.169 4 N -0.602 5.602 5 C 0.102 3.898 6 C 0.098 3.902 7 N -0.619 5.619 8 C 0.576 3.424 9 O -0.544 6.544 10 C -0.106 4.106 11 C -0.184 4.184 12 C -0.084 4.084 13 C -0.214 4.214 14 C 0.085 3.915 15 C -0.441 4.441 16 H 0.093 0.907 17 C 0.083 3.917 18 N -0.807 5.807 19 Si 0.911 3.089 20 H -0.270 1.270 21 H -0.291 1.291 22 H -0.241 1.241 23 C -0.185 4.185 24 C 0.086 3.914 25 C 0.512 3.488 26 O -0.532 6.532 27 H 0.050 0.950 28 H 0.088 0.912 29 H 0.059 0.941 30 H 0.082 0.918 31 H 0.051 0.949 32 H 0.062 0.938 33 H 0.081 0.919 34 H 0.085 0.915 35 H 0.068 0.932 36 H 0.111 0.889 37 H 0.077 0.923 38 H 0.105 0.895 39 H 0.102 0.898 40 H 0.103 0.897 41 H 0.287 0.713 42 H 0.116 0.884 43 H 0.105 0.895 44 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.401 -1.804 -16.000 16.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.035 3.965 3 C -0.227 4.227 4 N -0.336 5.336 5 C -0.022 4.022 6 C -0.025 4.025 7 N -0.355 5.355 8 C 0.368 3.632 9 O -0.422 6.422 10 C -0.108 4.108 11 C -0.204 4.204 12 C -0.103 4.103 13 C -0.233 4.233 14 C 0.081 3.919 15 C -0.470 4.470 16 H 0.111 0.889 17 C -0.136 4.136 18 N -0.430 5.430 19 Si 0.738 3.262 20 H -0.197 1.197 21 H -0.218 1.218 22 H -0.164 1.164 23 C -0.205 4.205 24 C -0.039 4.039 25 C 0.299 3.701 26 O -0.409 6.409 27 H 0.069 0.931 28 H 0.107 0.893 29 H 0.078 0.922 30 H 0.100 0.900 31 H 0.070 0.930 32 H 0.081 0.919 33 H 0.100 0.900 34 H 0.103 0.897 35 H 0.087 0.913 36 H 0.129 0.871 37 H 0.095 0.905 38 H 0.123 0.877 39 H 0.120 0.880 40 H 0.121 0.879 41 H 0.098 0.902 42 H 0.133 0.867 43 H 0.123 0.877 44 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 3.185 -1.686 -15.918 16.321 hybrid contribution -0.606 -0.308 0.057 0.682 sum 2.579 -1.994 -15.861 16.193 Atomic orbital electron populations 1.22270 0.94647 1.02178 1.03985 1.21092 0.95178 0.93466 0.86761 1.22198 1.00633 0.96072 1.03793 1.47442 1.51112 1.28869 1.06213 1.21800 0.93942 0.87818 0.98679 1.21890 0.92417 1.04729 0.83454 1.48062 1.48413 1.11648 1.27332 1.18849 0.78887 0.82384 0.83075 1.90685 1.51441 1.25336 1.74733 1.19361 1.00822 0.95914 0.94752 1.20375 1.03744 0.97220 0.99069 1.20571 0.98155 0.96652 0.94898 1.21210 1.06992 0.93702 1.01404 1.17656 0.90833 0.93035 0.90327 1.19497 1.02372 1.01881 1.23228 0.88859 1.26147 1.01333 0.94510 0.91659 1.69632 1.32171 1.23550 1.17687 0.86334 0.79552 0.78698 0.81594 1.19694 1.21827 1.16423 1.21525 1.06475 0.95342 0.97158 1.22644 1.01119 0.84823 0.95305 1.20493 0.80881 0.83382 0.85305 1.90661 1.34589 1.28680 1.86959 0.93053 0.89313 0.92174 0.90016 0.92960 0.91915 0.90010 0.89678 0.91339 0.87116 0.90452 0.87694 0.87985 0.87920 0.90248 0.86650 0.87706 0.83605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.97 9.08 37.16 0.34 -1.63 16 2 C 0.14 1.43 3.19 -67.93 -0.22 1.21 16 3 C -0.17 -1.73 9.08 37.16 0.34 -1.39 16 4 N -0.60 -7.14 2.78 -167.30 -0.47 -7.61 16 5 C 0.10 0.97 6.45 -4.51 -0.03 0.94 16 6 C 0.10 1.09 6.52 -3.62 -0.02 1.06 16 7 N -0.62 -9.30 2.98 -175.25 -0.52 -9.82 16 8 C 0.58 10.74 7.47 -12.31 -0.09 10.65 16 9 O -0.54 -11.12 16.20 5.33 0.09 -11.03 16 10 C -0.11 -2.17 5.41 -105.04 -0.57 -2.74 16 11 C -0.18 -3.82 9.60 -38.92 -0.37 -4.20 16 12 C -0.08 -1.76 10.01 -39.73 -0.40 -2.15 16 13 C -0.21 -4.88 6.92 -38.81 -0.27 -5.15 16 14 C 0.08 2.00 5.16 -106.87 -0.55 1.45 16 15 C -0.44 -11.24 9.61 -37.73 -0.36 -11.60 16 16 H 0.09 2.47 8.06 -52.49 -0.42 2.05 16 17 C 0.08 2.08 5.47 -17.35 -0.09 1.98 16 18 N -0.81 -20.80 13.93 55.55 0.77 -20.02 16 19 Si 0.91 20.07 24.37 -169.99 -4.14 15.93 16 20 H -0.27 -5.76 6.73 56.52 0.38 -5.38 16 21 H -0.29 -6.26 7.11 56.52 0.40 -5.86 16 22 H -0.24 -5.41 6.53 56.52 0.37 -5.04 16 23 C -0.19 -3.94 7.23 -38.44 -0.28 -4.22 16 24 C 0.09 1.31 4.71 -5.02 -0.02 1.28 16 25 C 0.51 7.60 6.98 -11.73 -0.08 7.52 16 26 O -0.53 -9.28 12.49 5.56 0.07 -9.21 16 27 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 28 H 0.09 1.28 5.76 -51.94 -0.30 0.98 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.08 0.65 7.73 -51.93 -0.40 0.25 16 31 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.08 1.07 6.07 -51.93 -0.32 0.76 16 34 H 0.08 0.55 7.94 -51.93 -0.41 0.14 16 35 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.11 1.25 7.08 -51.93 -0.37 0.88 16 37 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.10 2.07 7.91 -52.49 -0.42 1.65 16 39 H 0.10 1.83 8.06 -52.49 -0.42 1.40 16 40 H 0.10 2.33 4.25 -52.49 -0.22 2.11 16 41 H 0.29 6.73 8.30 -40.82 -0.34 6.39 16 42 H 0.12 2.23 5.27 -52.48 -0.28 1.96 16 43 H 0.11 1.45 7.58 -51.93 -0.39 1.05 16 44 H 0.15 2.58 5.05 -51.93 -0.26 2.32 16 LS Contribution 343.91 15.07 5.18 5.18 Total: -1.00 -29.20 343.91 -7.64 -36.84 By element: Atomic # 1 Polarization: 12.66 SS G_CDS: -5.94 Total: 6.72 kcal Atomic # 6 Polarization: -4.30 SS G_CDS: -2.69 Total: -6.98 kcal Atomic # 7 Polarization: -37.24 SS G_CDS: -0.21 Total: -37.45 kcal Atomic # 8 Polarization: -20.40 SS G_CDS: 0.16 Total: -20.24 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -4.14 Total: 15.93 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -29.20 -7.64 -36.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272771283.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.138 kcal (2) G-P(sol) polarization free energy of solvation -29.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds