Wall clock time and date at job start Tue Mar 31 2020 11:19:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.46831 * 2 1 4 4 N 1.46498 * 109.46778 * 119.99748 * 2 1 3 5 5 C 1.45646 * 117.70462 * 120.00701 * 4 2 1 6 6 C 1.52993 * 110.77423 * 158.07409 * 5 4 2 7 7 N 1.47273 * 108.18462 * 46.72486 * 6 5 4 8 8 C 1.34778 * 121.35076 * 118.47847 * 7 6 5 9 9 O 1.21544 * 120.00281 * 354.40004 * 8 7 6 10 10 C 1.47888 * 119.99407 * 174.40424 * 8 7 6 11 11 C 1.39919 * 120.02261 * 150.25261 * 10 8 7 12 12 C 1.38328 * 120.35703 * 179.97438 * 11 10 8 13 13 C 1.37754 * 120.41325 * 359.97438 * 12 11 10 14 14 C 1.40748 * 120.03960 * 359.97438 * 13 12 11 15 15 C 1.41436 * 120.17709 * 180.02562 * 14 13 12 16 16 H 1.07997 * 119.99798 * 150.05900 * 15 14 13 17 17 C 1.39932 * 119.99960 * 330.05141 * 15 14 13 18 18 N 1.30825 * 120.00376 * 167.84671 * 17 15 14 19 19 Si 1.86802 * 120.00009 * 347.84625 * 17 15 14 20 20 H 1.48497 * 109.47304 * 93.92056 * 19 17 15 21 21 H 1.48508 * 109.47139 * 213.91947 * 19 17 15 22 22 H 1.48500 * 109.46964 * 333.91685 * 19 17 15 23 23 C 1.38996 * 120.02827 * 329.96922 * 10 8 7 24 24 C 1.47050 * 117.28997 * 298.49075 * 7 6 5 25 25 C 1.33377 * 117.70475 * 299.97882 * 4 2 1 26 26 O 1.21279 * 118.49135 * 4.32355 * 25 4 2 27 27 H 1.08997 * 109.46777 * 179.97438 * 1 2 3 28 28 H 1.08989 * 109.47661 * 300.00243 * 1 2 3 29 29 H 1.09001 * 109.46745 * 60.00849 * 1 2 3 30 30 H 1.08998 * 109.47067 * 239.99821 * 2 1 3 31 31 H 1.08997 * 109.47322 * 179.97438 * 3 2 1 32 32 H 1.09001 * 109.47246 * 299.99739 * 3 2 1 33 33 H 1.08994 * 109.47641 * 59.99571 * 3 2 1 34 34 H 1.08992 * 109.21964 * 37.73984 * 5 4 2 35 35 H 1.09007 * 109.18013 * 278.38296 * 5 4 2 36 36 H 1.08994 * 109.71955 * 166.39296 * 6 5 4 37 37 H 1.08997 * 109.71736 * 287.05410 * 6 5 4 38 38 H 1.07996 * 119.82033 * 359.94804 * 11 10 8 39 39 H 1.08002 * 119.79462 * 180.02562 * 12 11 10 40 40 H 1.08000 * 119.97736 * 179.97438 * 13 12 11 41 41 H 0.97001 * 120.00922 * 180.02562 * 18 17 15 42 42 H 1.08008 * 120.19958 * 0.02562 * 23 10 8 43 43 H 1.08996 * 109.56886 * 282.91920 * 24 7 6 44 44 H 1.09002 * 109.56238 * 162.56413 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.8520 -1.8694 1.0047 6 6 3.6993 -2.1427 2.2488 7 7 2.8255 -2.0460 3.4304 8 6 2.6269 -3.1021 4.2439 9 8 3.0908 -4.1877 3.9548 10 6 1.8445 -2.9398 5.4884 11 6 1.1129 -4.0168 6.0007 12 6 0.3791 -3.8728 7.1645 13 6 0.3604 -2.6683 7.8326 14 6 1.0911 -1.5740 7.3330 15 6 1.0744 -0.3362 8.0170 16 1 1.9311 0.3195 7.9677 17 6 -0.0522 0.0389 8.7574 18 7 0.0127 1.0567 9.5769 19 14 -1.6489 -0.9135 8.5758 20 1 -1.7207 -1.9638 9.6231 21 1 -2.7986 0.0144 8.7257 22 1 -1.6967 -1.5482 7.2341 23 6 1.8402 -1.7191 6.1531 24 6 2.1784 -0.7506 3.6862 25 6 1.6686 -0.1953 2.3842 26 8 0.9049 0.7463 2.4165 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8898 29 1 -0.3633 0.5137 -0.8901 30 1 1.8934 -0.5138 -0.8899 31 1 3.1299 1.4426 0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6766 1.9564 0.8899 34 1 3.5099 -1.7086 0.1508 35 1 2.2140 -2.7312 0.8087 36 1 4.1280 -3.1430 2.1894 37 1 4.4972 -1.4035 2.3200 38 1 1.1207 -4.9654 5.4846 39 1 -0.1821 -4.7103 7.5521 40 1 -0.2153 -2.5637 8.7404 41 1 -0.7681 1.3165 10.0904 42 1 2.4068 -0.8863 5.7634 43 1 2.9021 -0.0601 4.1192 44 1 1.3452 -0.8886 4.3754 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000272771283.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:19:47 Heat of formation + Delta-G solvation = -44.441167 kcal Electronic energy + Delta-G solvation = -27122.558111 eV Core-core repulsion = 23425.596845 eV Total energy + Delta-G solvation = -3696.961266 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -42.16304 -40.80250 -39.16264 -37.50991 -36.84370 -35.53684 -33.63315 -32.45227 -31.98454 -30.70183 -28.30631 -28.07932 -27.12056 -25.56655 -24.30541 -22.62621 -22.54386 -21.36981 -19.97969 -18.95158 -18.50122 -17.84388 -17.63012 -17.13576 -16.94155 -16.60832 -16.40030 -16.13199 -15.55871 -15.31030 -15.05967 -14.84096 -14.56962 -14.38821 -14.24400 -13.96810 -13.81260 -13.65709 -13.44383 -13.29428 -13.06543 -12.90569 -12.74757 -12.66714 -12.48813 -12.29322 -12.15455 -11.99609 -11.69910 -11.58044 -11.27909 -11.03285 -10.69147 -9.89738 -9.74738 -9.61537 -9.53736 -8.89604 -6.55154 0.17677 0.70514 1.24929 1.39724 1.44135 1.46578 1.64047 1.74587 2.01517 2.09714 2.60995 3.32709 3.39794 3.43646 3.75399 3.96425 4.06978 4.15089 4.20221 4.23819 4.28936 4.37151 4.39407 4.46911 4.51198 4.61649 4.75890 4.78277 4.80490 4.83216 4.89906 4.90695 4.96944 5.11789 5.17864 5.30163 5.39054 5.42933 5.58771 5.64239 5.68777 5.82226 6.04075 6.09060 6.29555 6.37029 6.60453 6.76431 6.97379 7.05319 8.18136 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.013853 B = 0.004604 C = 0.003853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2020.745412 B = 6079.667285 C = 7265.481595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.134 3.866 3 C -0.164 4.164 4 N -0.595 5.595 5 C 0.102 3.898 6 C 0.092 3.908 7 N -0.609 5.609 8 C 0.577 3.423 9 O -0.563 6.563 10 C -0.115 4.115 11 C -0.177 4.177 12 C -0.085 4.085 13 C -0.226 4.226 14 C 0.066 3.934 15 C -0.473 4.473 16 H 0.064 0.936 17 C 0.048 3.952 18 N -0.849 5.849 19 Si 0.959 3.041 20 H -0.255 1.255 21 H -0.283 1.283 22 H -0.249 1.249 23 C -0.179 4.179 24 C 0.088 3.912 25 C 0.509 3.491 26 O -0.565 6.565 27 H 0.048 0.952 28 H 0.051 0.949 29 H 0.080 0.920 30 H 0.122 0.878 31 H 0.063 0.937 32 H 0.080 0.920 33 H 0.046 0.954 34 H 0.131 0.869 35 H 0.068 0.932 36 H 0.114 0.886 37 H 0.101 0.899 38 H 0.121 0.879 39 H 0.137 0.863 40 H 0.104 0.896 41 H 0.294 0.706 42 H 0.126 0.874 43 H 0.116 0.884 44 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.931 -3.688 -18.995 19.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.032 3.968 3 C -0.222 4.222 4 N -0.328 5.328 5 C -0.021 4.021 6 C -0.029 4.029 7 N -0.343 5.343 8 C 0.368 3.632 9 O -0.443 6.443 10 C -0.118 4.118 11 C -0.197 4.197 12 C -0.103 4.103 13 C -0.245 4.245 14 C 0.064 3.936 15 C -0.502 4.502 16 H 0.082 0.918 17 C -0.167 4.167 18 N -0.475 5.475 19 Si 0.784 3.216 20 H -0.181 1.181 21 H -0.211 1.211 22 H -0.173 1.173 23 C -0.199 4.199 24 C -0.037 4.037 25 C 0.297 3.703 26 O -0.445 6.445 27 H 0.067 0.933 28 H 0.070 0.930 29 H 0.099 0.901 30 H 0.140 0.860 31 H 0.082 0.918 32 H 0.099 0.901 33 H 0.065 0.935 34 H 0.149 0.851 35 H 0.087 0.913 36 H 0.132 0.868 37 H 0.119 0.881 38 H 0.139 0.861 39 H 0.155 0.845 40 H 0.121 0.879 41 H 0.104 0.896 42 H 0.144 0.856 43 H 0.133 0.867 44 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 3.744 -3.574 -18.955 19.649 hybrid contribution -0.657 0.172 0.789 1.041 sum 3.086 -3.402 -18.166 18.738 Atomic orbital electron populations 1.22220 0.95754 1.01688 1.03217 1.21337 0.94380 0.93905 0.87184 1.22137 1.01283 0.95831 1.02962 1.47521 1.50491 1.29078 1.05678 1.22007 0.94101 0.86745 0.99241 1.22254 0.92583 1.05821 0.82230 1.48029 1.48038 1.10454 1.27822 1.18480 0.78816 0.82959 0.82969 1.90677 1.52390 1.26033 1.75176 1.19686 1.00869 0.95472 0.95809 1.20749 1.02432 0.97786 0.98742 1.20922 0.97973 0.96860 0.94552 1.21358 1.07084 0.94239 1.01810 1.17809 0.91948 0.92786 0.91065 1.19461 1.02345 1.02776 1.25659 0.91781 1.26753 1.03504 0.95180 0.91248 1.69667 1.33290 1.25275 1.19280 0.85597 0.76656 0.78082 0.81297 1.18051 1.21059 1.17261 1.21666 1.05668 0.96226 0.96345 1.22484 1.00475 0.85132 0.95653 1.20327 0.80785 0.83206 0.86026 1.90673 1.36099 1.30228 1.87460 0.93327 0.92956 0.90070 0.86043 0.91777 0.90070 0.93515 0.85077 0.91346 0.86805 0.88062 0.86083 0.84539 0.87878 0.89583 0.85631 0.86661 0.86464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.61 9.08 71.98 0.65 -2.96 16 2 C 0.13 2.35 3.19 44.99 0.14 2.49 16 3 C -0.16 -2.97 9.08 71.98 0.65 -2.32 16 4 N -0.60 -12.52 2.78 -802.37 -2.23 -14.75 16 5 C 0.10 1.51 6.45 86.54 0.56 2.07 16 6 C 0.09 1.74 6.52 86.23 0.56 2.30 16 7 N -0.61 -17.29 2.98 -826.63 -2.46 -19.75 16 8 C 0.58 20.65 7.47 86.80 0.65 21.30 16 9 O -0.56 -21.86 16.20 -3.85 -0.06 -21.92 16 10 C -0.12 -4.66 5.41 -20.13 -0.11 -4.76 16 11 C -0.18 -7.02 9.60 22.70 0.22 -6.81 16 12 C -0.09 -3.37 10.01 22.18 0.22 -3.15 16 13 C -0.23 -10.19 6.92 22.77 0.16 -10.04 16 14 C 0.07 3.22 5.16 -21.32 -0.11 3.11 16 15 C -0.47 -25.36 9.61 23.47 0.23 -25.13 16 16 H 0.06 3.67 8.06 -2.91 -0.02 3.64 16 17 C 0.05 2.50 5.47 85.25 0.47 2.96 16 18 N -0.85 -45.72 13.93 21.82 0.30 -45.41 16 19 Si 0.96 41.82 24.37 68.60 1.67 43.49 16 20 H -0.26 -10.38 6.73 99.48 0.67 -9.71 16 21 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 22 H -0.25 -11.02 6.53 99.48 0.65 -10.37 16 23 C -0.18 -7.74 7.23 23.01 0.17 -7.57 16 24 C 0.09 2.65 4.71 85.45 0.40 3.05 16 25 C 0.51 14.81 6.98 87.79 0.61 15.43 16 26 O -0.57 -20.20 12.49 -3.03 -0.04 -20.24 16 27 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 28 H 0.05 1.52 5.76 -2.39 -0.01 1.51 16 29 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.12 1.25 7.73 -2.39 -0.02 1.23 16 31 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.05 1.20 6.07 -2.39 -0.01 1.19 16 34 H 0.13 0.88 7.94 -2.39 -0.02 0.86 16 35 H 0.07 1.10 8.14 -2.38 -0.02 1.08 16 36 H 0.11 2.18 7.08 -2.39 -0.02 2.16 16 37 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.12 4.43 7.91 -2.91 -0.02 4.41 16 39 H 0.14 4.42 8.06 -2.91 -0.02 4.40 16 40 H 0.10 4.61 4.25 -2.91 -0.01 4.60 16 41 H 0.29 14.30 8.30 -92.71 -0.77 13.53 16 42 H 0.13 5.02 5.27 -2.91 -0.02 5.00 16 43 H 0.12 3.19 7.58 -2.39 -0.02 3.17 16 44 H 0.12 4.27 5.05 -2.39 -0.01 4.26 16 Total: -1.00 -66.51 343.91 3.58 -62.93 By element: Atomic # 1 Polarization: 24.76 SS G_CDS: 0.93 Total: 25.69 kcal Atomic # 6 Polarization: -15.50 SS G_CDS: 5.47 Total: -10.03 kcal Atomic # 7 Polarization: -75.53 SS G_CDS: -4.39 Total: -79.92 kcal Atomic # 8 Polarization: -42.06 SS G_CDS: -0.10 Total: -42.16 kcal Atomic # 14 Polarization: 41.82 SS G_CDS: 1.67 Total: 43.49 kcal Total: -66.51 3.58 -62.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272771283.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.490 kcal (2) G-P(sol) polarization free energy of solvation -66.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds