Wall clock time and date at job start Tue Mar 31 2020 11:00:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32982 * 1 3 3 C 1.47106 * 120.00224 * 2 1 4 4 O 1.21606 * 119.99790 * 0.02562 * 3 2 1 5 5 N 1.34782 * 119.99927 * 180.02562 * 3 2 1 6 6 C 1.46499 * 119.99698 * 179.97438 * 5 3 2 7 7 C 1.50696 * 109.46935 * 179.97438 * 6 5 3 8 8 C 1.38368 * 119.84872 * 90.00439 * 7 6 5 9 9 C 1.37961 * 120.13994 * 180.02562 * 8 7 6 10 10 C 1.39576 * 119.85563 * 0.02562 * 9 8 7 11 11 C 1.47847 * 120.14206 * 179.97438 * 10 9 8 12 12 O 1.21551 * 119.99945 * 0.02562 * 11 10 9 13 13 N 1.34780 * 119.99752 * 179.97438 * 11 10 9 14 14 C 1.46500 * 119.99800 * 180.02562 * 13 11 10 15 15 H 1.09001 * 109.46973 * 325.00465 * 14 13 11 16 16 C 1.50703 * 109.46979 * 205.00044 * 14 13 11 17 17 H 1.07996 * 120.00052 * 327.46850 * 16 14 13 18 18 C 1.37877 * 119.99694 * 147.46723 * 16 14 13 19 19 N 1.31514 * 119.99716 * 176.06631 * 18 16 14 20 20 Si 1.86800 * 120.00176 * 356.06588 * 18 16 14 21 21 H 1.48503 * 109.47284 * 275.08677 * 20 18 16 22 22 H 1.48496 * 109.47106 * 35.08908 * 20 18 16 23 23 H 1.48500 * 109.47245 * 155.08920 * 20 18 16 24 24 C 1.53000 * 109.47016 * 85.00153 * 14 13 11 25 25 C 1.52999 * 109.47072 * 294.35292 * 24 14 13 26 26 C 1.39569 * 119.70933 * 0.25279 * 10 9 8 27 27 C 1.37956 * 119.85572 * 359.46953 * 26 10 9 28 28 H 1.07999 * 120.00517 * 179.97438 * 1 2 3 29 29 H 1.08005 * 120.00050 * 359.97438 * 1 2 3 30 30 H 1.08005 * 120.00050 * 180.02562 * 2 1 3 31 31 H 0.96997 * 119.99942 * 0.02562 * 5 3 2 32 32 H 1.09000 * 109.46842 * 60.00674 * 6 5 3 33 33 H 1.09001 * 109.47236 * 300.00238 * 6 5 3 34 34 H 1.07996 * 119.93002 * 0.02562 * 8 7 6 35 35 H 1.08008 * 120.06882 * 179.97438 * 9 8 7 36 36 H 0.96999 * 119.99699 * 0.02562 * 13 11 10 37 37 H 0.97000 * 119.99899 * 180.02562 * 19 18 16 38 38 H 1.08996 * 109.47103 * 54.35672 * 24 14 13 39 39 H 1.09004 * 109.47065 * 174.35684 * 24 14 13 40 40 H 1.08996 * 109.47467 * 300.00157 * 25 24 14 41 41 H 1.08999 * 109.47294 * 60.00338 * 25 24 14 42 42 H 1.09004 * 109.47192 * 180.02562 * 25 24 14 43 43 H 1.08005 * 120.07028 * 179.72666 * 26 10 9 44 44 H 1.08003 * 119.92757 * 180.27032 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3298 0.0000 0.0000 3 6 2.0654 1.2739 0.0000 4 8 1.4574 2.3271 0.0005 5 7 3.4132 1.2739 -0.0005 6 6 4.1457 2.5426 -0.0011 7 6 5.6273 2.2672 -0.0010 8 6 6.3044 2.1409 -1.2010 9 6 7.6606 1.8882 -1.2079 10 6 8.3496 1.7595 -0.0009 11 6 9.8030 1.4882 -0.0009 12 8 10.4005 1.3772 -1.0536 13 7 10.4654 1.3649 1.1664 14 6 11.9057 1.0966 1.1664 15 1 12.1549 0.4505 0.3246 16 6 12.2895 0.4145 2.4542 17 1 11.7594 0.6452 3.3663 18 6 13.3176 -0.5042 2.4678 19 7 13.7039 -1.0419 3.6041 20 14 14.1616 -0.9851 0.8723 21 1 13.3903 -2.0683 0.2111 22 1 14.2291 0.1945 -0.0271 23 1 15.5366 -1.4641 1.1645 24 6 12.6702 2.4159 1.0405 25 6 12.3889 3.0398 -0.3279 26 6 7.6594 1.8822 1.2060 27 6 6.3043 2.1406 1.1990 28 1 -0.5401 -0.9352 -0.0004 29 1 -0.5400 0.9353 0.0004 30 1 1.8699 -0.9353 -0.0004 31 1 3.8982 0.4338 -0.0013 32 1 3.8828 3.1143 0.8889 33 1 3.8820 3.1140 -0.8911 34 1 5.7700 2.2403 -2.1343 35 1 8.1880 1.7894 -2.1454 36 1 9.9886 1.4539 2.0063 37 1 14.4274 -1.6879 3.6138 38 1 12.3465 3.0997 1.8251 39 1 13.7391 2.2274 1.1410 40 1 12.7126 2.3560 -1.1125 41 1 11.3200 3.2283 -0.4285 42 1 12.9339 3.9795 -0.4178 43 1 8.1860 1.7793 2.1434 44 1 5.7699 2.2402 2.1322 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273813693.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:00:43 Heat of formation + Delta-G solvation = -36.174609 kcal Electronic energy + Delta-G solvation = -25131.070126 eV Core-core repulsion = 21434.467325 eV Total energy + Delta-G solvation = -3696.602801 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.30906 -39.74358 -38.40919 -35.41224 -35.07670 -33.33218 -32.58278 -32.01754 -31.21070 -30.76996 -27.81873 -26.80383 -23.71227 -22.96237 -22.63541 -22.12672 -20.51319 -20.14248 -19.59256 -18.08764 -17.81709 -16.69480 -16.29054 -16.08411 -15.43178 -15.29172 -15.04565 -14.69756 -14.52801 -14.41569 -13.93421 -13.88470 -13.65013 -13.21068 -12.87474 -12.84097 -12.79690 -12.27448 -12.16356 -11.95000 -11.84678 -11.68414 -11.16408 -10.98677 -10.74196 -10.72856 -10.36484 -10.23830 -10.02523 -9.89907 -9.42310 -9.31863 -9.23801 -9.11024 -8.95668 -8.75710 -8.07957 -6.27812 -4.31852 0.72574 1.02216 1.25598 2.80757 2.98577 3.22722 3.28947 3.31230 3.38321 3.86156 4.01123 4.28634 4.31129 4.49041 4.61263 4.69152 4.81310 5.00051 5.06695 5.17296 5.24085 5.27340 5.36468 5.51355 5.70048 5.82204 5.86685 5.88627 6.02040 6.05368 6.05617 6.15727 6.22486 6.30867 6.35259 6.60827 6.73178 6.75959 6.91572 6.96850 7.16718 7.24343 7.29793 7.49103 7.87871 8.07376 8.48690 8.71404 8.87405 9.33823 10.83773 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.021537 B = 0.002439 C = 0.002325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.797384 B =11477.399696 C =12038.374904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.215 4.215 3 C 0.542 3.458 4 O -0.547 6.547 5 N -0.721 5.721 6 C 0.161 3.839 7 C -0.100 4.100 8 C -0.110 4.110 9 C -0.067 4.067 10 C -0.111 4.111 11 C 0.539 3.461 12 O -0.548 6.548 13 N -0.694 5.694 14 C 0.237 3.763 15 H 0.051 0.949 16 C -0.532 4.532 17 H 0.079 0.921 18 C 0.082 3.918 19 N -0.888 5.888 20 Si 0.872 3.128 21 H -0.273 1.273 22 H -0.258 1.258 23 H -0.286 1.286 24 C -0.126 4.126 25 C -0.145 4.145 26 C -0.089 4.089 27 C -0.107 4.107 28 H 0.115 0.885 29 H 0.114 0.886 30 H 0.128 0.872 31 H 0.405 0.595 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.127 0.873 35 H 0.137 0.863 36 H 0.392 0.608 37 H 0.268 0.732 38 H 0.052 0.948 39 H 0.062 0.938 40 H 0.050 0.950 41 H 0.049 0.951 42 H 0.031 0.969 43 H 0.133 0.867 44 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.986 3.469 -6.506 22.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.236 4.236 3 C 0.331 3.669 4 O -0.426 6.426 5 N -0.372 5.372 6 C 0.038 3.962 7 C -0.101 4.101 8 C -0.128 4.128 9 C -0.086 4.086 10 C -0.114 4.114 11 C 0.325 3.675 12 O -0.428 6.428 13 N -0.342 5.342 14 C 0.135 3.865 15 H 0.069 0.931 16 C -0.570 4.570 17 H 0.097 0.903 18 C -0.123 4.123 19 N -0.524 5.524 20 Si 0.699 3.301 21 H -0.199 1.199 22 H -0.182 1.182 23 H -0.212 1.212 24 C -0.165 4.165 25 C -0.203 4.203 26 C -0.107 4.107 27 C -0.126 4.126 28 H 0.134 0.866 29 H 0.132 0.868 30 H 0.146 0.854 31 H 0.240 0.760 32 H 0.096 0.904 33 H 0.096 0.904 34 H 0.145 0.855 35 H 0.155 0.845 36 H 0.227 0.773 37 H 0.078 0.922 38 H 0.071 0.929 39 H 0.080 0.920 40 H 0.069 0.931 41 H 0.068 0.932 42 H 0.050 0.950 43 H 0.150 0.850 44 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -20.785 4.018 -7.125 22.337 hybrid contribution 0.657 -0.799 -0.228 1.059 sum -20.129 3.219 -7.353 21.670 Atomic orbital electron populations 1.24757 0.95372 1.03371 0.89766 1.22785 0.96491 0.96990 1.07287 1.18743 0.82046 0.89989 0.76153 1.90796 1.68305 1.33340 1.50199 1.46012 1.06160 1.09783 1.75245 1.20213 0.86670 0.85926 1.03350 1.19945 0.94726 1.01677 0.93748 1.21029 0.94175 1.00117 0.97510 1.21306 0.93594 0.95517 0.98177 1.20400 0.94666 1.02251 0.94114 1.18272 0.86094 0.78120 0.85050 1.90733 1.68942 1.51714 1.31384 1.46540 1.11538 1.69239 1.06921 1.19192 0.75730 0.93156 0.98418 0.93086 1.20990 1.18590 1.23769 0.93684 0.90331 1.24918 0.96192 0.94839 0.96327 1.69877 1.28333 1.28662 1.25526 0.86921 0.78977 0.80043 0.84178 1.19858 1.18237 1.21164 1.22094 1.00762 0.98309 0.95332 1.21910 1.00847 0.98957 0.98559 1.21440 0.94362 0.97189 0.97755 1.21000 0.94190 0.99802 0.97566 0.86643 0.86792 0.85444 0.76038 0.90352 0.90404 0.85482 0.84493 0.77299 0.92195 0.92939 0.91980 0.93073 0.93178 0.95029 0.84955 0.85386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.54 14.31 28.91 0.41 -0.13 16 2 C -0.21 -1.44 10.03 -37.81 -0.38 -1.82 16 3 C 0.54 5.25 7.76 -12.66 -0.10 5.15 16 4 O -0.55 -7.36 16.22 5.27 0.09 -7.27 16 5 N -0.72 -5.78 5.54 -62.67 -0.35 -6.13 16 6 C 0.16 1.39 5.79 -5.20 -0.03 1.36 16 7 C -0.10 -0.93 5.25 -104.53 -0.55 -1.48 16 8 C -0.11 -1.10 9.68 -39.64 -0.38 -1.48 16 9 C -0.07 -0.85 9.60 -39.18 -0.38 -1.23 16 10 C -0.11 -1.61 5.87 -104.97 -0.62 -2.22 16 11 C 0.54 10.04 6.37 -12.33 -0.08 9.96 16 12 O -0.55 -11.82 13.48 5.32 0.07 -11.75 16 13 N -0.69 -13.46 4.98 -55.88 -0.28 -13.74 16 14 C 0.24 5.46 1.82 -69.08 -0.13 5.33 16 15 H 0.05 1.29 4.92 -51.93 -0.26 1.03 16 16 C -0.53 -13.90 9.05 -34.44 -0.31 -14.21 16 17 H 0.08 2.16 8.06 -52.49 -0.42 1.73 16 18 C 0.08 2.24 5.47 -17.82 -0.10 2.14 16 19 N -0.89 -25.66 13.96 55.43 0.77 -24.89 16 20 Si 0.87 21.14 26.69 -169.99 -4.54 16.60 16 21 H -0.27 -6.65 7.11 56.52 0.40 -6.24 16 22 H -0.26 -6.13 6.88 56.52 0.39 -5.74 16 23 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 24 C -0.13 -2.68 5.54 -26.73 -0.15 -2.83 16 25 C -0.15 -2.86 8.53 37.16 0.32 -2.55 16 26 C -0.09 -1.06 9.54 -39.19 -0.37 -1.43 16 27 C -0.11 -1.05 9.68 -39.64 -0.38 -1.43 16 28 H 0.12 0.35 8.06 -52.49 -0.42 -0.07 16 29 H 0.11 0.79 7.49 -52.48 -0.39 0.39 16 30 H 0.13 0.55 8.06 -52.48 -0.42 0.12 16 31 H 0.40 2.53 8.45 -40.82 -0.34 2.19 16 32 H 0.08 0.69 8.08 -51.93 -0.42 0.27 16 33 H 0.08 0.69 8.08 -51.93 -0.42 0.27 16 34 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 35 H 0.14 1.79 7.65 -52.48 -0.40 1.39 16 36 H 0.39 6.67 6.63 -40.82 -0.27 6.40 16 37 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 38 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 39 H 0.06 1.37 7.90 -51.93 -0.41 0.96 16 40 H 0.05 1.07 7.88 -51.93 -0.41 0.66 16 41 H 0.05 0.98 5.63 -51.93 -0.29 0.69 16 42 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.13 1.45 6.41 -52.48 -0.34 1.12 16 44 H 0.13 1.01 8.06 -52.48 -0.42 0.59 16 LS Contribution 370.26 15.07 5.58 5.58 Total: -1.00 -32.87 370.26 -7.93 -40.80 By element: Atomic # 1 Polarization: 13.72 SS G_CDS: -6.06 Total: 7.66 kcal Atomic # 6 Polarization: -3.65 SS G_CDS: -3.22 Total: -6.87 kcal Atomic # 7 Polarization: -44.90 SS G_CDS: 0.15 Total: -44.75 kcal Atomic # 8 Polarization: -19.17 SS G_CDS: 0.16 Total: -19.02 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -4.54 Total: 16.60 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -32.87 -7.93 -40.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273813693.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.628 kcal (2) G-P(sol) polarization free energy of solvation -32.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds