Wall clock time and date at job start Tue Mar 31 2020 11:00:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32982 * 1 3 3 C 1.47106 * 120.00224 * 2 1 4 4 O 1.21606 * 119.99790 * 0.02562 * 3 2 1 5 5 N 1.34782 * 119.99927 * 180.02562 * 3 2 1 6 6 C 1.46499 * 119.99698 * 179.97438 * 5 3 2 7 7 C 1.50696 * 109.46935 * 179.97438 * 6 5 3 8 8 C 1.38368 * 119.84872 * 90.00439 * 7 6 5 9 9 C 1.37961 * 120.13994 * 180.02562 * 8 7 6 10 10 C 1.39576 * 119.85563 * 0.02562 * 9 8 7 11 11 C 1.47847 * 120.14206 * 179.97438 * 10 9 8 12 12 O 1.21551 * 119.99945 * 0.02562 * 11 10 9 13 13 N 1.34780 * 119.99752 * 179.97438 * 11 10 9 14 14 C 1.46500 * 119.99800 * 180.02562 * 13 11 10 15 15 H 1.09001 * 109.46973 * 325.00465 * 14 13 11 16 16 C 1.50703 * 109.46979 * 205.00044 * 14 13 11 17 17 H 1.07996 * 120.00052 * 327.46850 * 16 14 13 18 18 C 1.37877 * 119.99694 * 147.46723 * 16 14 13 19 19 N 1.31514 * 119.99716 * 176.06631 * 18 16 14 20 20 Si 1.86800 * 120.00176 * 356.06588 * 18 16 14 21 21 H 1.48503 * 109.47284 * 275.08677 * 20 18 16 22 22 H 1.48496 * 109.47106 * 35.08908 * 20 18 16 23 23 H 1.48500 * 109.47245 * 155.08920 * 20 18 16 24 24 C 1.53000 * 109.47016 * 85.00153 * 14 13 11 25 25 C 1.52999 * 109.47072 * 294.35292 * 24 14 13 26 26 C 1.39569 * 119.70933 * 0.25279 * 10 9 8 27 27 C 1.37956 * 119.85572 * 359.46953 * 26 10 9 28 28 H 1.07999 * 120.00517 * 179.97438 * 1 2 3 29 29 H 1.08005 * 120.00050 * 359.97438 * 1 2 3 30 30 H 1.08005 * 120.00050 * 180.02562 * 2 1 3 31 31 H 0.96997 * 119.99942 * 0.02562 * 5 3 2 32 32 H 1.09000 * 109.46842 * 60.00674 * 6 5 3 33 33 H 1.09001 * 109.47236 * 300.00238 * 6 5 3 34 34 H 1.07996 * 119.93002 * 0.02562 * 8 7 6 35 35 H 1.08008 * 120.06882 * 179.97438 * 9 8 7 36 36 H 0.96999 * 119.99699 * 0.02562 * 13 11 10 37 37 H 0.97000 * 119.99899 * 180.02562 * 19 18 16 38 38 H 1.08996 * 109.47103 * 54.35672 * 24 14 13 39 39 H 1.09004 * 109.47065 * 174.35684 * 24 14 13 40 40 H 1.08996 * 109.47467 * 300.00157 * 25 24 14 41 41 H 1.08999 * 109.47294 * 60.00338 * 25 24 14 42 42 H 1.09004 * 109.47192 * 180.02562 * 25 24 14 43 43 H 1.08005 * 120.07028 * 179.72666 * 26 10 9 44 44 H 1.08003 * 119.92757 * 180.27032 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3298 0.0000 0.0000 3 6 2.0654 1.2739 0.0000 4 8 1.4574 2.3271 0.0005 5 7 3.4132 1.2739 -0.0005 6 6 4.1457 2.5426 -0.0011 7 6 5.6273 2.2672 -0.0010 8 6 6.3044 2.1409 -1.2010 9 6 7.6606 1.8882 -1.2079 10 6 8.3496 1.7595 -0.0009 11 6 9.8030 1.4882 -0.0009 12 8 10.4005 1.3772 -1.0536 13 7 10.4654 1.3649 1.1664 14 6 11.9057 1.0966 1.1664 15 1 12.1549 0.4505 0.3246 16 6 12.2895 0.4145 2.4542 17 1 11.7594 0.6452 3.3663 18 6 13.3176 -0.5042 2.4678 19 7 13.7039 -1.0419 3.6041 20 14 14.1616 -0.9851 0.8723 21 1 13.3903 -2.0683 0.2111 22 1 14.2291 0.1945 -0.0271 23 1 15.5366 -1.4641 1.1645 24 6 12.6702 2.4159 1.0405 25 6 12.3889 3.0398 -0.3279 26 6 7.6594 1.8822 1.2060 27 6 6.3043 2.1406 1.1990 28 1 -0.5401 -0.9352 -0.0004 29 1 -0.5400 0.9353 0.0004 30 1 1.8699 -0.9353 -0.0004 31 1 3.8982 0.4338 -0.0013 32 1 3.8828 3.1143 0.8889 33 1 3.8820 3.1140 -0.8911 34 1 5.7700 2.2403 -2.1343 35 1 8.1880 1.7894 -2.1454 36 1 9.9886 1.4539 2.0063 37 1 14.4274 -1.6879 3.6138 38 1 12.3465 3.0997 1.8251 39 1 13.7391 2.2274 1.1410 40 1 12.7126 2.3560 -1.1125 41 1 11.3200 3.2283 -0.4285 42 1 12.9339 3.9795 -0.4178 43 1 8.1860 1.7793 2.1434 44 1 5.7699 2.2402 2.1322 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273813693.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:00:43 Heat of formation + Delta-G solvation = -58.630872 kcal Electronic energy + Delta-G solvation = -25132.043903 eV Core-core repulsion = 21434.467325 eV Total energy + Delta-G solvation = -3697.576578 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.35622 -40.71394 -39.56461 -37.01103 -36.01148 -34.45083 -33.89850 -33.48020 -32.18098 -31.86242 -29.52391 -27.82455 -24.94466 -24.27736 -23.61425 -23.11381 -21.83554 -21.22868 -20.77423 -19.59176 -18.52698 -18.23891 -17.47286 -17.17101 -16.65154 -16.28976 -16.22240 -16.07287 -15.64786 -15.51328 -15.11406 -14.79906 -14.55045 -14.45993 -14.39448 -14.11336 -13.79399 -13.68918 -13.59560 -13.33868 -12.93723 -12.76853 -12.61980 -12.59387 -12.35835 -12.04609 -11.86889 -11.71295 -11.22014 -11.12884 -10.87533 -10.79364 -10.75709 -10.11362 -9.99026 -9.96867 -9.67738 -8.39640 -6.45431 -0.25667 0.38126 0.49457 1.28491 1.33281 1.43931 1.82149 2.26324 2.35111 2.38363 2.41888 2.92780 3.02129 3.52421 3.78239 3.88055 3.95003 4.00167 4.25836 4.29970 4.30124 4.37265 4.40217 4.53084 4.62991 4.65739 4.77644 4.80955 4.84947 5.03112 5.09331 5.21074 5.24564 5.26695 5.33193 5.36814 5.38385 5.42350 5.47781 5.51233 5.54232 5.72712 5.85765 6.12542 6.54442 6.59018 6.86719 7.19900 7.21152 7.41166 8.75171 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.021537 B = 0.002439 C = 0.002325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.797384 B =11477.399696 C =12038.374904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.228 4.228 3 C 0.536 3.464 4 O -0.593 6.593 5 N -0.711 5.711 6 C 0.164 3.836 7 C -0.081 4.081 8 C -0.101 4.101 9 C -0.074 4.074 10 C -0.135 4.135 11 C 0.539 3.461 12 O -0.582 6.582 13 N -0.696 5.696 14 C 0.242 3.758 15 H 0.030 0.970 16 C -0.526 4.526 17 H 0.058 0.942 18 C 0.034 3.966 19 N -0.929 5.929 20 Si 0.923 3.077 21 H -0.275 1.275 22 H -0.253 1.253 23 H -0.278 1.278 24 C -0.124 4.124 25 C -0.134 4.134 26 C -0.088 4.088 27 C -0.100 4.100 28 H 0.147 0.853 29 H 0.097 0.903 30 H 0.155 0.845 31 H 0.415 0.585 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.151 0.849 35 H 0.128 0.872 36 H 0.403 0.597 37 H 0.270 0.730 38 H 0.062 0.938 39 H 0.052 0.948 40 H 0.034 0.966 41 H 0.048 0.952 42 H 0.057 0.943 43 H 0.138 0.862 44 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.011 3.652 -7.224 24.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.248 4.248 3 C 0.327 3.673 4 O -0.476 6.476 5 N -0.363 5.363 6 C 0.041 3.959 7 C -0.082 4.082 8 C -0.119 4.119 9 C -0.093 4.093 10 C -0.139 4.139 11 C 0.328 3.672 12 O -0.465 6.465 13 N -0.345 5.345 14 C 0.138 3.862 15 H 0.048 0.952 16 C -0.565 4.565 17 H 0.076 0.924 18 C -0.166 4.166 19 N -0.567 5.567 20 Si 0.748 3.252 21 H -0.201 1.201 22 H -0.177 1.177 23 H -0.204 1.204 24 C -0.163 4.163 25 C -0.191 4.191 26 C -0.107 4.107 27 C -0.118 4.118 28 H 0.165 0.835 29 H 0.115 0.885 30 H 0.173 0.827 31 H 0.252 0.748 32 H 0.098 0.902 33 H 0.097 0.903 34 H 0.168 0.832 35 H 0.146 0.854 36 H 0.240 0.760 37 H 0.080 0.920 38 H 0.081 0.919 39 H 0.070 0.930 40 H 0.053 0.947 41 H 0.067 0.933 42 H 0.076 0.924 43 H 0.156 0.844 44 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -22.812 4.193 -7.838 24.483 hybrid contribution 1.104 -0.809 0.017 1.369 sum -21.708 3.384 -7.821 23.321 Atomic orbital electron populations 1.24992 0.95261 1.04097 0.87929 1.22910 0.96801 0.96526 1.08585 1.19285 0.82355 0.90495 0.75209 1.90775 1.69162 1.35099 1.52549 1.45931 1.05866 1.10055 1.74411 1.20164 0.85895 0.86302 1.03560 1.20034 0.95013 0.99746 0.93365 1.21205 0.92967 0.98863 0.98879 1.21308 0.94690 0.96099 0.97206 1.20099 0.92172 1.05667 0.95930 1.18827 0.87780 0.76729 0.83906 1.90704 1.70192 1.53180 1.32382 1.46270 1.10291 1.69860 1.08102 1.18921 0.78030 0.93496 0.95718 0.95220 1.21192 1.17741 1.23287 0.94253 0.92404 1.25564 0.97141 0.95264 0.98658 1.69971 1.29516 1.30004 1.27248 0.86114 0.78323 0.79708 0.81091 1.20098 1.17723 1.20360 1.22010 0.99838 0.97663 0.96804 1.21776 1.01063 0.99586 0.96717 1.21517 0.95254 0.96958 0.96983 1.21236 0.93254 0.98471 0.98840 0.83513 0.88489 0.82718 0.74790 0.90235 0.90324 0.83156 0.85438 0.76023 0.92037 0.91889 0.92961 0.94706 0.93334 0.92377 0.84397 0.82924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.78 14.31 66.65 0.95 0.17 16 2 C -0.23 -2.49 10.03 23.43 0.23 -2.25 16 3 C 0.54 9.43 7.76 86.57 0.67 10.10 16 4 O -0.59 -15.48 16.22 -4.05 -0.07 -15.55 16 5 N -0.71 -9.58 5.54 -470.45 -2.61 -12.19 16 6 C 0.16 2.37 5.79 85.63 0.50 2.87 16 7 C -0.08 -1.26 5.25 -19.81 -0.10 -1.36 16 8 C -0.10 -1.76 9.68 22.23 0.22 -1.54 16 9 C -0.07 -1.80 9.60 22.53 0.22 -1.58 16 10 C -0.14 -3.80 5.87 -20.09 -0.12 -3.92 16 11 C 0.54 20.06 6.37 86.79 0.55 20.62 16 12 O -0.58 -25.37 13.48 -3.88 -0.05 -25.43 16 13 N -0.70 -27.00 4.98 -448.97 -2.24 -29.23 16 14 C 0.24 11.20 1.82 44.25 0.08 11.28 16 15 H 0.03 1.52 4.92 -2.39 -0.01 1.50 16 16 C -0.53 -27.92 9.05 25.60 0.23 -27.69 16 17 H 0.06 3.25 8.06 -2.91 -0.02 3.22 16 18 C 0.03 1.90 5.47 84.65 0.46 2.37 16 19 N -0.93 -54.66 13.96 21.45 0.30 -54.36 16 20 Si 0.92 44.08 26.69 68.60 1.83 45.91 16 21 H -0.28 -13.14 7.11 99.48 0.71 -12.44 16 22 H -0.25 -11.79 6.88 99.48 0.68 -11.10 16 23 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 24 C -0.12 -5.22 5.54 30.59 0.17 -5.05 16 25 C -0.13 -5.15 8.53 71.98 0.61 -4.54 16 26 C -0.09 -1.95 9.54 22.52 0.21 -1.73 16 27 C -0.10 -1.66 9.68 22.23 0.22 -1.44 16 28 H 0.15 0.40 8.06 -2.91 -0.02 0.37 16 29 H 0.10 1.25 7.49 -2.91 -0.02 1.23 16 30 H 0.16 0.79 8.06 -2.91 -0.02 0.76 16 31 H 0.42 3.90 8.45 -92.71 -0.78 3.12 16 32 H 0.08 1.20 8.08 -2.39 -0.02 1.18 16 33 H 0.08 1.19 8.08 -2.39 -0.02 1.17 16 34 H 0.15 1.93 8.06 -2.91 -0.02 1.91 16 35 H 0.13 3.31 7.65 -2.91 -0.02 3.28 16 36 H 0.40 13.66 6.63 -92.71 -0.61 13.05 16 37 H 0.27 14.97 8.31 -92.71 -0.77 14.20 16 38 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 39 H 0.05 2.28 7.90 -2.38 -0.02 2.26 16 40 H 0.03 1.43 7.88 -2.39 -0.02 1.41 16 41 H 0.05 1.86 5.63 -2.39 -0.01 1.85 16 42 H 0.06 1.90 8.14 -2.38 -0.02 1.88 16 43 H 0.14 2.82 6.41 -2.91 -0.02 2.80 16 44 H 0.15 1.83 8.06 -2.91 -0.02 1.81 16 Total: -1.00 -72.63 370.26 1.89 -70.74 By element: Atomic # 1 Polarization: 24.20 SS G_CDS: -0.39 Total: 23.81 kcal Atomic # 6 Polarization: -8.82 SS G_CDS: 5.11 Total: -3.71 kcal Atomic # 7 Polarization: -91.24 SS G_CDS: -4.54 Total: -95.78 kcal Atomic # 8 Polarization: -40.86 SS G_CDS: -0.12 Total: -40.98 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 1.83 Total: 45.91 kcal Total: -72.63 1.89 -70.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273813693.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.113 kcal (2) G-P(sol) polarization free energy of solvation -72.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds