Wall clock time and date at job start Tue Mar 31 2020 11:03:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47121 * 2 1 4 4 H 1.08997 * 109.47220 * 55.14312 * 3 2 1 5 5 C 1.50694 * 109.47154 * 175.14923 * 3 2 1 6 6 H 1.07999 * 120.00383 * 119.99882 * 5 3 2 7 7 C 1.37886 * 119.99773 * 299.99739 * 5 3 2 8 8 N 1.31509 * 120.00000 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99946 * 179.97438 * 7 5 3 10 10 H 1.48507 * 109.47002 * 90.00025 * 9 7 5 11 11 H 1.48493 * 109.47326 * 210.00151 * 9 7 5 12 12 H 1.48505 * 109.47515 * 330.00468 * 9 7 5 13 13 N 1.46505 * 109.46871 * 295.14620 * 3 2 1 14 14 C 1.34775 * 119.99777 * 111.19043 * 13 3 2 15 15 O 1.21653 * 120.00170 * 5.60898 * 14 13 3 16 16 C 1.47022 * 119.99988 * 185.32381 * 14 13 3 17 17 C 1.35253 * 120.00577 * 288.71157 * 16 14 13 18 18 C 1.47128 * 119.99712 * 351.79500 * 17 16 14 19 19 C 1.39858 * 120.17422 * 329.05669 * 18 17 16 20 20 C 1.37886 * 119.82439 * 179.71709 * 19 18 17 21 21 C 1.38409 * 120.17111 * 0.53376 * 20 19 18 22 22 C 1.38398 * 120.34983 * 359.75965 * 21 20 19 23 23 C 1.37881 * 120.17709 * 359.96271 * 22 21 20 24 24 N 1.39876 * 119.99922 * 108.70348 * 16 14 13 25 25 C 1.34776 * 119.99850 * 356.36212 * 24 16 14 26 26 C 1.50700 * 120.00124 * 184.90776 * 25 24 16 27 27 O 1.21298 * 120.00047 * 4.90939 * 25 24 16 28 28 H 1.08996 * 109.47382 * 67.02488 * 1 2 3 29 29 H 1.09001 * 109.46696 * 187.02300 * 1 2 3 30 30 H 1.08996 * 109.46995 * 307.02292 * 1 2 3 31 31 H 1.09004 * 109.46999 * 239.99935 * 2 1 3 32 32 H 1.09005 * 109.46864 * 120.00110 * 2 1 3 33 33 H 0.97000 * 120.00405 * 179.97438 * 8 7 5 34 34 H 0.97002 * 119.99979 * 291.19135 * 13 3 2 35 35 H 1.07997 * 120.00831 * 171.80334 * 17 16 14 36 36 H 1.08001 * 120.09022 * 359.97438 * 19 18 17 37 37 H 1.08005 * 119.91421 * 180.29633 * 20 19 18 38 38 H 1.08004 * 119.82127 * 179.73993 * 21 20 19 39 39 H 1.08001 * 119.91324 * 179.97438 * 22 21 20 40 40 H 1.08000 * 120.09008 * 180.02562 * 23 22 21 41 41 H 0.96995 * 120.00590 * 176.35929 * 24 16 14 42 42 H 1.08997 * 109.46849 * 359.97438 * 26 25 24 43 43 H 1.08994 * 109.47452 * 120.00274 * 26 25 24 44 44 H 1.09006 * 109.46598 * 240.00071 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6074 1.9808 0.8433 5 6 3.5422 1.4442 0.1201 6 1 4.1456 1.8894 -0.6571 7 6 4.1463 0.8773 1.2224 8 7 3.4115 0.3348 2.1686 9 14 6.0083 0.8788 1.3711 10 1 6.4478 2.1112 2.0735 11 1 6.4443 -0.3129 2.1424 12 1 6.6132 0.8395 0.0154 13 7 1.6494 2.0985 -1.2504 14 6 0.7299 3.0837 -1.2357 15 8 0.2994 3.4984 -0.1761 16 6 0.2516 3.6618 -2.5001 17 6 1.0678 4.4519 -3.2341 18 6 2.3643 4.8807 -2.6863 19 6 2.5190 5.0650 -1.3086 20 6 3.7388 5.4613 -0.8025 21 6 4.8055 5.6873 -1.6550 22 6 4.6587 5.5130 -3.0201 23 6 3.4469 5.1115 -3.5413 24 7 -1.0476 3.3943 -2.9442 25 6 -1.8358 2.5487 -2.2513 26 6 -3.1936 2.1744 -2.7872 27 8 -1.4523 2.0889 -1.1964 28 1 -0.3634 0.4011 -0.9461 29 1 -0.3633 -1.0200 0.1257 30 1 -0.3633 0.6188 0.8205 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 3.8364 -0.0643 2.9439 34 1 2.0526 1.8238 -2.0888 35 1 0.7680 4.7683 -4.2222 36 1 1.6864 4.8934 -0.6425 37 1 3.8612 5.5994 0.2617 38 1 5.7573 6.0016 -1.2529 39 1 5.4956 5.6917 -3.6790 40 1 3.3341 4.9755 -4.6067 41 1 -1.3813 3.8175 -3.7506 42 1 -3.3618 2.6817 -3.7372 43 1 -3.2403 1.0959 -2.9376 44 1 -3.9612 2.4753 -2.0741 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273824849.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:03:08 Heat of formation + Delta-G solvation = -52.116035 kcal Electronic energy + Delta-G solvation = -27658.685983 eV Core-core repulsion = 23961.391909 eV Total energy + Delta-G solvation = -3697.294073 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.78578 -40.15502 -39.42732 -37.19175 -36.56462 -34.33261 -33.82317 -32.58961 -31.74393 -31.23413 -29.25929 -28.64667 -25.59564 -24.47181 -23.43919 -23.19808 -21.59093 -21.48850 -20.71010 -19.02811 -18.22705 -17.84150 -17.54313 -17.21912 -16.62618 -16.39389 -16.17960 -15.90891 -15.46552 -15.22190 -14.86609 -14.63130 -14.56176 -14.22201 -14.01118 -13.67078 -13.58617 -13.36400 -13.28862 -13.23499 -13.15800 -12.88196 -12.67470 -12.52861 -12.14868 -12.08118 -11.82965 -11.81551 -11.49706 -11.18456 -10.93692 -10.75914 -10.45817 -10.28285 -9.78423 -9.55158 -8.66000 -8.11901 -6.27966 -0.14753 0.59004 1.04473 1.39299 1.40462 1.50991 1.68257 1.86619 2.32321 2.40951 2.68587 3.02624 3.15504 3.81077 3.92194 4.05168 4.15394 4.15744 4.35413 4.47480 4.48880 4.59040 4.60155 4.61921 4.66275 4.79375 4.85182 4.93662 5.08788 5.11418 5.14983 5.22858 5.29334 5.42263 5.52458 5.58036 5.62163 5.68602 5.71098 5.76939 5.79559 6.07245 6.17553 6.20961 6.43735 6.80636 6.96110 7.21932 7.37651 7.65338 8.92459 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.010019 B = 0.006822 C = 0.004364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2794.079468 B = 4103.616289 C = 6413.999264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.119 4.119 3 C 0.285 3.715 4 H 0.001 0.999 5 C -0.532 4.532 6 H 0.059 0.941 7 C 0.014 3.986 8 N -0.918 5.918 9 Si 0.962 3.038 10 H -0.281 1.281 11 H -0.281 1.281 12 H -0.261 1.261 13 N -0.690 5.690 14 C 0.579 3.421 15 O -0.592 6.592 16 C 0.073 3.927 17 C -0.126 4.126 18 C -0.066 4.066 19 C -0.136 4.136 20 C -0.133 4.133 21 C -0.124 4.124 22 C -0.122 4.122 23 C -0.099 4.099 24 N -0.639 5.639 25 C 0.474 3.526 26 C -0.151 4.151 27 O -0.540 6.540 28 H 0.060 0.940 29 H 0.043 0.957 30 H 0.010 0.990 31 H 0.041 0.959 32 H 0.071 0.929 33 H 0.263 0.737 34 H 0.394 0.606 35 H 0.186 0.814 36 H 0.100 0.900 37 H 0.101 0.899 38 H 0.135 0.865 39 H 0.156 0.844 40 H 0.163 0.837 41 H 0.436 0.564 42 H 0.119 0.881 43 H 0.104 0.896 44 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.139 8.013 -20.093 22.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.158 4.158 3 C 0.182 3.818 4 H 0.019 0.981 5 C -0.570 4.570 6 H 0.077 0.923 7 C -0.185 4.185 8 N -0.557 5.557 9 Si 0.786 3.214 10 H -0.207 1.207 11 H -0.207 1.207 12 H -0.185 1.185 13 N -0.337 5.337 14 C 0.366 3.634 15 O -0.474 6.474 16 C -0.027 4.027 17 C -0.151 4.151 18 C -0.067 4.067 19 C -0.154 4.154 20 C -0.151 4.151 21 C -0.142 4.142 22 C -0.140 4.140 23 C -0.117 4.117 24 N -0.287 5.287 25 C 0.265 3.735 26 C -0.210 4.210 27 O -0.415 6.415 28 H 0.079 0.921 29 H 0.062 0.938 30 H 0.029 0.971 31 H 0.060 0.940 32 H 0.089 0.911 33 H 0.072 0.928 34 H 0.227 0.773 35 H 0.203 0.797 36 H 0.117 0.883 37 H 0.119 0.881 38 H 0.153 0.847 39 H 0.174 0.826 40 H 0.181 0.819 41 H 0.277 0.723 42 H 0.138 0.862 43 H 0.123 0.877 44 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -6.289 7.767 -18.408 20.945 hybrid contribution 0.836 -0.066 0.670 1.073 sum -5.453 7.700 -17.738 20.091 Atomic orbital electron populations 1.21588 0.96519 0.98582 1.00807 1.21751 0.93984 0.98920 1.01179 1.18287 0.93108 0.88874 0.81525 0.98122 1.21568 0.91789 1.37570 1.06106 0.92273 1.25721 1.02896 0.94733 0.95123 1.70053 1.36792 1.38946 1.09946 0.85505 0.79877 0.77400 0.78567 1.20682 1.20664 1.18490 1.45879 1.40694 1.35862 1.11274 1.17815 0.78242 0.78998 0.88343 1.90730 1.60138 1.62397 1.34135 1.19927 0.87966 1.00842 0.93966 1.21833 0.92257 1.00590 1.00378 1.18914 0.94664 1.01016 0.92084 1.21840 0.98340 0.99237 0.95986 1.21102 0.93978 1.00382 0.99666 1.21473 0.98326 0.99891 0.94548 1.21424 0.98543 0.99236 0.94787 1.21587 0.91385 0.98076 1.00614 1.43574 1.09921 1.45604 1.29608 1.22393 0.89188 0.77624 0.84343 1.21833 0.89615 1.05170 1.04353 1.90945 1.74583 1.52602 1.23401 0.92094 0.93833 0.97113 0.93999 0.91110 0.92822 0.77313 0.79729 0.88250 0.88055 0.84680 0.82645 0.81924 0.72256 0.86213 0.87708 0.88184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.74 9.02 71.98 0.65 -5.09 16 2 C -0.12 -6.29 5.45 30.60 0.17 -6.12 16 3 C 0.29 15.90 2.31 44.24 0.10 16.00 16 4 H 0.00 0.05 6.93 -2.39 -0.02 0.04 16 5 C -0.53 -30.37 8.84 25.60 0.23 -30.14 16 6 H 0.06 3.29 7.81 -2.91 -0.02 3.27 16 7 C 0.01 0.83 5.29 84.66 0.45 1.27 16 8 N -0.92 -55.77 11.29 21.45 0.24 -55.53 16 9 Si 0.96 44.92 29.54 68.60 2.03 46.94 16 10 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 11 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 12 H -0.26 -11.52 7.11 99.48 0.71 -10.82 16 13 N -0.69 -31.85 4.36 -449.75 -1.96 -33.81 16 14 C 0.58 25.79 1.94 86.55 0.17 25.96 16 15 O -0.59 -32.96 13.67 17.19 0.24 -32.73 16 16 C 0.07 2.27 6.39 39.47 0.25 2.52 16 17 C -0.13 -3.09 9.70 23.92 0.23 -2.86 16 18 C -0.07 -1.98 5.54 -20.16 -0.11 -2.10 16 19 C -0.14 -5.34 8.26 22.58 0.19 -5.16 16 20 C -0.13 -5.00 10.03 22.23 0.22 -4.78 16 21 C -0.12 -3.69 10.04 22.35 0.22 -3.46 16 22 C -0.12 -2.92 10.03 22.22 0.22 -2.70 16 23 C -0.10 -2.30 9.80 22.58 0.22 -2.08 16 24 N -0.64 -14.28 5.40 -299.46 -1.62 -15.90 16 25 C 0.47 12.88 7.89 87.66 0.69 13.57 16 26 C -0.15 -2.06 10.39 71.24 0.74 -1.32 16 27 O -0.54 -22.31 10.55 18.30 0.19 -22.12 16 28 H 0.06 2.83 5.34 -2.39 -0.01 2.81 16 29 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 30 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.04 2.04 8.14 -2.38 -0.02 2.02 16 32 H 0.07 4.15 5.95 -2.38 -0.01 4.13 16 33 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 34 H 0.39 16.21 8.82 -92.71 -0.82 15.39 16 35 H 0.19 2.39 8.06 -2.91 -0.02 2.36 16 36 H 0.10 4.74 4.77 -2.91 -0.01 4.73 16 37 H 0.10 3.98 8.06 -2.91 -0.02 3.96 16 38 H 0.14 3.36 8.06 -2.91 -0.02 3.34 16 39 H 0.16 2.53 8.06 -2.91 -0.02 2.51 16 40 H 0.16 2.37 8.06 -2.91 -0.02 2.35 16 41 H 0.44 4.62 8.54 -92.71 -0.79 3.83 16 42 H 0.12 0.55 7.92 -2.39 -0.02 0.53 16 43 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 44 H 0.10 1.37 8.14 -2.38 -0.02 1.35 16 Total: -1.00 -87.38 362.43 3.19 -84.19 By element: Atomic # 1 Polarization: 36.00 SS G_CDS: -0.57 Total: 35.43 kcal Atomic # 6 Polarization: -11.12 SS G_CDS: 4.64 Total: -6.48 kcal Atomic # 7 Polarization: -101.90 SS G_CDS: -3.34 Total: -105.24 kcal Atomic # 8 Polarization: -55.28 SS G_CDS: 0.43 Total: -54.85 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.94 kcal Total: -87.38 3.19 -84.19 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273824849.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.076 kcal (2) G-P(sol) polarization free energy of solvation -87.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds