Wall clock time and date at job start Tue Mar 31 2020 11:05:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.46894 * 2 1 4 4 H 1.09000 * 109.47140 * 304.99571 * 3 2 1 5 5 C 1.50706 * 109.47103 * 184.99525 * 3 2 1 6 6 H 1.07995 * 120.00167 * 239.72222 * 5 3 2 7 7 C 1.37879 * 119.99394 * 59.99920 * 5 3 2 8 8 N 1.31514 * 120.00338 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 119.99424 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47474 * 90.00322 * 9 7 5 11 11 H 1.48507 * 109.46754 * 210.00056 * 9 7 5 12 12 H 1.48498 * 109.47278 * 329.99887 * 9 7 5 13 13 N 1.46500 * 109.47204 * 64.99698 * 3 2 1 14 14 C 1.34775 * 120.00366 * 274.99782 * 13 3 2 15 15 O 1.21282 * 119.99750 * 0.02562 * 14 13 3 16 16 C 1.50699 * 120.00244 * 180.02562 * 14 13 3 17 17 N 1.46497 * 109.47133 * 180.02562 * 16 14 13 18 18 C 1.39818 * 119.77692 * 89.99599 * 17 16 14 19 19 C 1.38870 * 120.19406 * 18.45606 * 18 17 16 20 20 C 1.38106 * 119.89027 * 179.97438 * 19 18 17 21 21 C 1.38301 * 120.09303 * 0.02887 * 20 19 18 22 22 C 1.38279 * 120.14863 * 359.97438 * 21 20 19 23 23 C 1.38089 * 120.02885 * 359.97438 * 22 21 20 24 24 C 1.50651 * 120.18270 * 179.97438 * 23 22 21 25 25 C 1.52907 * 109.52505 * 146.07258 * 24 23 22 26 26 C 1.34567 * 119.77138 * 269.72852 * 17 16 14 27 27 O 1.21290 * 119.61380 * 0.83130 * 26 17 16 28 28 H 1.08998 * 109.47867 * 299.99927 * 1 2 3 29 29 H 1.08993 * 109.47122 * 60.00537 * 1 2 3 30 30 H 1.09004 * 109.47017 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47407 * 239.99489 * 2 1 3 32 32 H 1.09001 * 109.46995 * 119.99751 * 2 1 3 33 33 H 0.96996 * 119.99730 * 179.97438 * 8 7 5 34 34 H 0.97001 * 119.99882 * 94.99976 * 13 3 2 35 35 H 1.08996 * 109.46708 * 300.00131 * 16 14 13 36 36 H 1.09001 * 109.46991 * 60.00072 * 16 14 13 37 37 H 1.07997 * 120.05073 * 0.02562 * 19 18 17 38 38 H 1.07997 * 119.95325 * 180.02562 * 20 19 18 39 39 H 1.08002 * 119.92608 * 180.02562 * 21 20 19 40 40 H 1.08007 * 119.98568 * 179.97438 * 22 21 20 41 41 H 1.09002 * 109.46265 * 266.08665 * 24 23 22 42 42 H 1.09001 * 109.46413 * 26.06636 * 24 23 22 43 43 H 1.08995 * 109.40129 * 168.71147 * 25 24 23 44 44 H 1.09001 * 109.39630 * 288.53525 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 -0.8419 5 6 3.5419 1.4443 -0.1237 6 1 4.1469 1.8929 0.6502 7 6 4.1432 0.8784 -1.2279 8 7 3.4062 0.3374 -2.1732 9 14 6.0049 0.8800 -1.3809 10 1 6.5539 -0.3520 -0.7595 11 1 6.3835 0.9214 -2.8163 12 1 6.5575 2.0720 -0.6887 13 7 1.6522 2.0975 1.2518 14 6 0.4350 2.6644 1.3669 15 8 -0.3397 2.6319 0.4343 16 6 0.0365 3.3387 2.6544 17 7 -1.3225 3.8707 2.5267 18 6 -2.4162 3.0731 2.8767 19 6 -2.2372 1.9581 3.6851 20 6 -3.3220 1.1749 4.0274 21 6 -4.5847 1.4994 3.5659 22 6 -4.7660 2.6089 2.7608 23 6 -3.6855 3.3965 2.4160 24 6 -3.8790 4.6058 1.5386 25 6 -2.8954 5.7007 1.9531 26 6 -1.5094 5.1257 2.0784 27 8 -0.5503 5.8008 1.7693 28 1 -0.3635 0.5138 0.8899 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 3.8293 -0.0604 -2.9501 34 1 2.2717 2.1232 1.9978 35 1 0.0678 2.6146 3.4685 36 1 0.7279 4.1542 2.8665 37 1 -1.2515 1.7045 4.0460 38 1 -3.1840 0.3079 4.6563 39 1 -5.4312 0.8853 3.8356 40 1 -5.7533 2.8597 2.4015 41 1 -3.7007 4.3322 0.4986 42 1 -4.8991 4.9740 1.6474 43 1 -2.8943 6.4900 1.2015 44 1 -3.1999 6.1160 2.9138 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273864949.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:05:45 Heat of formation + Delta-G solvation = -46.380744 kcal Electronic energy + Delta-G solvation = -27101.976889 eV Core-core repulsion = 23404.931517 eV Total energy + Delta-G solvation = -3697.045373 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.25310 -38.93473 -38.53958 -35.61679 -34.93750 -34.42328 -32.39261 -31.08732 -30.32796 -29.56757 -28.28384 -26.61616 -24.47732 -23.11366 -22.89328 -22.13922 -20.33704 -19.35320 -19.01231 -17.83486 -17.35761 -16.92262 -16.11582 -15.72048 -15.25159 -15.13097 -14.90833 -14.62018 -14.42059 -14.16953 -13.79781 -13.75255 -13.33654 -12.92457 -12.75213 -12.67340 -12.55428 -12.39845 -11.72179 -11.65562 -11.39044 -11.30068 -11.25150 -11.00787 -10.98118 -10.81005 -10.56916 -10.30688 -10.17354 -9.88334 -9.63494 -9.08195 -9.01538 -8.89849 -8.49735 -7.88678 -7.82586 -6.11451 -4.20865 1.16355 1.24979 2.49019 2.75637 3.24841 3.31814 3.33606 3.35774 3.69196 4.14759 4.29453 4.39940 4.53218 4.57675 4.79932 4.92134 5.00422 5.07267 5.19754 5.24306 5.26914 5.35120 5.48128 5.50942 5.56860 5.65367 5.74897 5.93364 6.03430 6.26049 6.38444 6.42288 6.44994 6.49145 6.65842 6.79333 7.02987 7.19421 7.29337 7.36496 7.44973 7.62055 7.72620 7.90587 7.97506 8.18334 8.64992 8.78162 9.11672 9.46343 10.93907 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.019205 B = 0.003708 C = 0.003385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1457.628430 B = 7549.640686 C = 8268.893501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.126 4.126 3 C 0.272 3.728 4 H 0.048 0.952 5 C -0.534 4.534 6 H 0.061 0.939 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.901 3.099 10 H -0.279 1.279 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.706 5.706 14 C 0.488 3.512 15 O -0.535 6.535 16 C 0.079 3.921 17 N -0.532 5.532 18 C 0.179 3.821 19 C -0.154 4.154 20 C -0.088 4.088 21 C -0.147 4.147 22 C -0.085 4.085 23 C -0.121 4.121 24 C -0.076 4.076 25 C -0.133 4.133 26 C 0.523 3.477 27 O -0.520 6.520 28 H 0.037 0.963 29 H 0.048 0.952 30 H 0.022 0.978 31 H 0.099 0.901 32 H 0.031 0.969 33 H 0.264 0.736 34 H 0.388 0.612 35 H 0.108 0.892 36 H 0.115 0.885 37 H 0.127 0.873 38 H 0.126 0.874 39 H 0.123 0.877 40 H 0.126 0.874 41 H 0.086 0.914 42 H 0.088 0.912 43 H 0.108 0.892 44 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.689 4.241 13.912 21.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.165 4.165 3 C 0.171 3.829 4 H 0.066 0.934 5 C -0.572 4.572 6 H 0.079 0.921 7 C -0.137 4.137 8 N -0.520 5.520 9 Si 0.728 3.272 10 H -0.205 1.205 11 H -0.211 1.211 12 H -0.198 1.198 13 N -0.355 5.355 14 C 0.271 3.729 15 O -0.413 6.413 16 C -0.047 4.047 17 N -0.254 5.254 18 C 0.084 3.916 19 C -0.175 4.175 20 C -0.107 4.107 21 C -0.166 4.166 22 C -0.103 4.103 23 C -0.124 4.124 24 C -0.113 4.113 25 C -0.172 4.172 26 C 0.312 3.688 27 O -0.395 6.395 28 H 0.056 0.944 29 H 0.067 0.933 30 H 0.041 0.959 31 H 0.117 0.883 32 H 0.049 0.951 33 H 0.074 0.926 34 H 0.220 0.780 35 H 0.125 0.875 36 H 0.133 0.867 37 H 0.145 0.855 38 H 0.144 0.856 39 H 0.141 0.859 40 H 0.144 0.856 41 H 0.105 0.895 42 H 0.107 0.893 43 H 0.126 0.874 44 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -15.615 4.573 12.816 20.712 hybrid contribution 1.425 -0.261 0.213 1.464 sum -14.190 4.312 13.029 19.740 Atomic orbital electron populations 1.21811 0.98328 0.97908 1.01137 1.21927 0.92561 0.99779 1.02253 1.18777 0.94201 0.89079 0.80889 0.93439 1.21237 0.90696 1.38854 1.06458 0.92061 1.24884 0.98616 0.94832 0.95324 1.69896 1.35116 1.37658 1.09314 0.86456 0.84876 0.78429 0.77396 1.20542 1.21075 1.19842 1.46438 1.14307 1.56043 1.18683 1.20514 0.83310 0.79771 0.89281 1.90681 1.51391 1.59216 1.39987 1.21656 0.83797 1.00924 0.98341 1.44982 1.05427 1.12813 1.62149 1.17623 0.86397 0.92331 0.95204 1.20837 1.00047 0.96055 1.00529 1.20936 0.92166 0.98626 0.98982 1.21039 0.97300 0.98071 1.00180 1.20795 0.97734 0.94484 0.97319 1.19489 0.92047 0.99521 1.01296 1.20415 0.99621 0.91654 0.99656 1.21677 0.91126 0.99510 1.04921 1.20724 0.92161 0.80504 0.75376 1.90751 1.43160 1.58885 1.46706 0.94380 0.93320 0.95938 0.88303 0.95052 0.92580 0.77994 0.87455 0.86664 0.85498 0.85640 0.85947 0.85574 0.89529 0.89337 0.87382 0.88193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.04 8.51 37.16 0.32 -2.72 16 2 C -0.13 -3.09 5.45 -26.73 -0.15 -3.23 16 3 C 0.27 6.93 2.24 -69.08 -0.15 6.77 16 4 H 0.05 1.43 7.58 -51.93 -0.39 1.03 16 5 C -0.53 -14.24 8.73 -34.44 -0.30 -14.54 16 6 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 7 C 0.07 1.80 5.29 -17.82 -0.09 1.71 16 8 N -0.88 -24.99 11.29 55.43 0.63 -24.36 16 9 Si 0.90 20.82 29.54 -169.99 -5.02 15.80 16 10 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 11 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 12 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 13 N -0.71 -14.69 5.02 -54.93 -0.28 -14.97 16 14 C 0.49 9.84 6.47 -10.99 -0.07 9.77 16 15 O -0.54 -12.80 13.57 5.56 0.08 -12.73 16 16 C 0.08 1.20 5.62 -5.20 -0.03 1.17 16 17 N -0.53 -8.09 2.18 -114.89 -0.25 -8.34 16 18 C 0.18 2.44 6.32 -83.75 -0.53 1.91 16 19 C -0.15 -1.86 9.33 -39.40 -0.37 -2.23 16 20 C -0.09 -0.91 10.04 -39.61 -0.40 -1.31 16 21 C -0.15 -1.40 10.04 -39.54 -0.40 -1.80 16 22 C -0.08 -0.84 9.69 -39.62 -0.38 -1.22 16 23 C -0.12 -1.44 5.66 -104.47 -0.59 -2.03 16 24 C -0.08 -0.78 6.00 -27.95 -0.17 -0.95 16 25 C -0.13 -1.45 6.08 -27.99 -0.17 -1.62 16 26 C 0.52 8.24 7.46 -11.14 -0.08 8.15 16 27 O -0.52 -10.08 16.60 5.55 0.09 -9.98 16 28 H 0.04 0.83 5.64 -51.93 -0.29 0.54 16 29 H 0.05 1.19 7.85 -51.93 -0.41 0.78 16 30 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.10 2.68 5.95 -51.93 -0.31 2.37 16 32 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 34 H 0.39 6.89 8.54 -40.82 -0.35 6.54 16 35 H 0.11 1.26 5.81 -51.93 -0.30 0.96 16 36 H 0.12 1.69 7.39 -51.93 -0.38 1.31 16 37 H 0.13 1.37 6.02 -52.49 -0.32 1.06 16 38 H 0.13 1.00 8.06 -52.49 -0.42 0.57 16 39 H 0.12 0.87 8.06 -52.49 -0.42 0.44 16 40 H 0.13 0.91 8.06 -52.48 -0.42 0.49 16 41 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 42 H 0.09 0.62 8.06 -51.93 -0.42 0.20 16 43 H 0.11 1.08 8.14 -51.93 -0.42 0.66 16 44 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 356.23 15.07 5.37 5.37 Total: -1.00 -34.10 356.23 -9.05 -43.14 By element: Atomic # 1 Polarization: 14.32 SS G_CDS: -6.10 Total: 8.23 kcal Atomic # 6 Polarization: 1.41 SS G_CDS: -3.57 Total: -2.16 kcal Atomic # 7 Polarization: -47.77 SS G_CDS: 0.10 Total: -47.67 kcal Atomic # 8 Polarization: -22.88 SS G_CDS: 0.17 Total: -22.71 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -34.10 -9.05 -43.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273864949.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.238 kcal (2) G-P(sol) polarization free energy of solvation -34.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds