Wall clock time and date at job start Tue Mar 31 2020 11:05:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.46894 * 2 1 4 4 H 1.09000 * 109.47140 * 304.99571 * 3 2 1 5 5 C 1.50706 * 109.47103 * 184.99525 * 3 2 1 6 6 H 1.07995 * 120.00167 * 239.72222 * 5 3 2 7 7 C 1.37879 * 119.99394 * 59.99920 * 5 3 2 8 8 N 1.31514 * 120.00338 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 119.99424 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47474 * 90.00322 * 9 7 5 11 11 H 1.48507 * 109.46754 * 210.00056 * 9 7 5 12 12 H 1.48498 * 109.47278 * 329.99887 * 9 7 5 13 13 N 1.46500 * 109.47204 * 64.99698 * 3 2 1 14 14 C 1.34775 * 120.00366 * 274.99782 * 13 3 2 15 15 O 1.21282 * 119.99750 * 0.02562 * 14 13 3 16 16 C 1.50699 * 120.00244 * 180.02562 * 14 13 3 17 17 N 1.46497 * 109.47133 * 180.02562 * 16 14 13 18 18 C 1.39818 * 119.77692 * 89.99599 * 17 16 14 19 19 C 1.38870 * 120.19406 * 18.45606 * 18 17 16 20 20 C 1.38106 * 119.89027 * 179.97438 * 19 18 17 21 21 C 1.38301 * 120.09303 * 0.02887 * 20 19 18 22 22 C 1.38279 * 120.14863 * 359.97438 * 21 20 19 23 23 C 1.38089 * 120.02885 * 359.97438 * 22 21 20 24 24 C 1.50651 * 120.18270 * 179.97438 * 23 22 21 25 25 C 1.52907 * 109.52505 * 146.07258 * 24 23 22 26 26 C 1.34567 * 119.77138 * 269.72852 * 17 16 14 27 27 O 1.21290 * 119.61380 * 0.83130 * 26 17 16 28 28 H 1.08998 * 109.47867 * 299.99927 * 1 2 3 29 29 H 1.08993 * 109.47122 * 60.00537 * 1 2 3 30 30 H 1.09004 * 109.47017 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47407 * 239.99489 * 2 1 3 32 32 H 1.09001 * 109.46995 * 119.99751 * 2 1 3 33 33 H 0.96996 * 119.99730 * 179.97438 * 8 7 5 34 34 H 0.97001 * 119.99882 * 94.99976 * 13 3 2 35 35 H 1.08996 * 109.46708 * 300.00131 * 16 14 13 36 36 H 1.09001 * 109.46991 * 60.00072 * 16 14 13 37 37 H 1.07997 * 120.05073 * 0.02562 * 19 18 17 38 38 H 1.07997 * 119.95325 * 180.02562 * 20 19 18 39 39 H 1.08002 * 119.92608 * 180.02562 * 21 20 19 40 40 H 1.08007 * 119.98568 * 179.97438 * 22 21 20 41 41 H 1.09002 * 109.46265 * 266.08665 * 24 23 22 42 42 H 1.09001 * 109.46413 * 26.06636 * 24 23 22 43 43 H 1.08995 * 109.40129 * 168.71147 * 25 24 23 44 44 H 1.09001 * 109.39630 * 288.53525 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 -0.8419 5 6 3.5419 1.4443 -0.1237 6 1 4.1469 1.8929 0.6502 7 6 4.1432 0.8784 -1.2279 8 7 3.4062 0.3374 -2.1732 9 14 6.0049 0.8800 -1.3809 10 1 6.5539 -0.3520 -0.7595 11 1 6.3835 0.9214 -2.8163 12 1 6.5575 2.0720 -0.6887 13 7 1.6522 2.0975 1.2518 14 6 0.4350 2.6644 1.3669 15 8 -0.3397 2.6319 0.4343 16 6 0.0365 3.3387 2.6544 17 7 -1.3225 3.8707 2.5267 18 6 -2.4162 3.0731 2.8767 19 6 -2.2372 1.9581 3.6851 20 6 -3.3220 1.1749 4.0274 21 6 -4.5847 1.4994 3.5659 22 6 -4.7660 2.6089 2.7608 23 6 -3.6855 3.3965 2.4160 24 6 -3.8790 4.6058 1.5386 25 6 -2.8954 5.7007 1.9531 26 6 -1.5094 5.1257 2.0784 27 8 -0.5503 5.8008 1.7693 28 1 -0.3635 0.5138 0.8899 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 3.8293 -0.0604 -2.9501 34 1 2.2717 2.1232 1.9978 35 1 0.0678 2.6146 3.4685 36 1 0.7279 4.1542 2.8665 37 1 -1.2515 1.7045 4.0460 38 1 -3.1840 0.3079 4.6563 39 1 -5.4312 0.8853 3.8356 40 1 -5.7533 2.8597 2.4015 41 1 -3.7007 4.3322 0.4986 42 1 -4.8991 4.9740 1.6474 43 1 -2.8943 6.4900 1.2015 44 1 -3.1999 6.1160 2.9138 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273864949.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:05:44 Heat of formation + Delta-G solvation = -68.046363 kcal Electronic energy + Delta-G solvation = -27102.916381 eV Core-core repulsion = 23404.931517 eV Total energy + Delta-G solvation = -3697.984864 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.32971 -40.47511 -39.65273 -37.14611 -36.35908 -35.40921 -34.34391 -32.93807 -31.23428 -30.48165 -29.73872 -28.38574 -25.42920 -24.96461 -23.85979 -23.26946 -21.94809 -21.17885 -19.96300 -19.14482 -18.75223 -18.14248 -17.68155 -17.16060 -16.77894 -16.40283 -16.19681 -15.97588 -15.71680 -15.31676 -14.93356 -14.87327 -14.63352 -14.56518 -14.13734 -13.95740 -13.61856 -13.49735 -13.36863 -13.20229 -12.95814 -12.86269 -12.67524 -12.53325 -12.21471 -12.16295 -12.07903 -11.83140 -11.66639 -11.61149 -11.08876 -11.03964 -10.67010 -10.53113 -9.69981 -9.68064 -8.88802 -8.18678 -6.36537 0.28136 0.45267 1.34188 1.42339 1.43692 1.53911 1.70431 1.75437 2.35107 2.62469 2.92394 3.10596 3.35157 3.68311 3.75652 3.89789 3.92992 4.11315 4.15303 4.19352 4.32323 4.42979 4.45378 4.53406 4.53599 4.64393 4.72471 4.76428 4.85946 4.95094 5.02064 5.12672 5.18847 5.21880 5.40251 5.45261 5.52627 5.58437 5.62167 5.64893 5.76030 5.89491 5.98446 6.13964 6.26392 6.71286 6.80383 6.94134 7.30351 7.52102 8.86645 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.019205 B = 0.003708 C = 0.003385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1457.628430 B = 7549.640686 C = 8268.893501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.118 4.118 3 C 0.281 3.719 4 H -0.010 1.010 5 C -0.550 4.550 6 H 0.071 0.929 7 C 0.016 3.984 8 N -0.915 5.915 9 Si 0.971 3.029 10 H -0.268 1.268 11 H -0.287 1.287 12 H -0.267 1.267 13 N -0.703 5.703 14 C 0.485 3.515 15 O -0.577 6.577 16 C 0.087 3.913 17 N -0.535 5.535 18 C 0.142 3.858 19 C -0.167 4.167 20 C -0.095 4.095 21 C -0.143 4.143 22 C -0.085 4.085 23 C -0.135 4.135 24 C -0.073 4.073 25 C -0.127 4.127 26 C 0.508 3.492 27 O -0.572 6.572 28 H 0.044 0.956 29 H 0.018 0.982 30 H 0.046 0.954 31 H 0.071 0.929 32 H 0.045 0.955 33 H 0.265 0.735 34 H 0.405 0.595 35 H 0.146 0.854 36 H 0.120 0.880 37 H 0.133 0.867 38 H 0.149 0.851 39 H 0.152 0.848 40 H 0.156 0.844 41 H 0.063 0.937 42 H 0.128 0.872 43 H 0.114 0.886 44 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.991 3.604 16.255 23.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.157 4.157 3 C 0.178 3.822 4 H 0.007 0.993 5 C -0.588 4.588 6 H 0.089 0.911 7 C -0.184 4.184 8 N -0.553 5.553 9 Si 0.795 3.205 10 H -0.193 1.193 11 H -0.213 1.213 12 H -0.191 1.191 13 N -0.353 5.353 14 C 0.270 3.730 15 O -0.457 6.457 16 C -0.039 4.039 17 N -0.256 5.256 18 C 0.049 3.951 19 C -0.187 4.187 20 C -0.113 4.113 21 C -0.161 4.161 22 C -0.104 4.104 23 C -0.137 4.137 24 C -0.109 4.109 25 C -0.166 4.166 26 C 0.300 3.700 27 O -0.451 6.451 28 H 0.063 0.937 29 H 0.037 0.963 30 H 0.065 0.935 31 H 0.089 0.911 32 H 0.064 0.936 33 H 0.074 0.926 34 H 0.240 0.760 35 H 0.164 0.836 36 H 0.138 0.862 37 H 0.151 0.849 38 H 0.167 0.833 39 H 0.170 0.830 40 H 0.174 0.826 41 H 0.082 0.918 42 H 0.147 0.853 43 H 0.132 0.868 44 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -16.946 3.917 15.219 23.111 hybrid contribution 1.716 -0.111 -0.505 1.792 sum -15.230 3.807 14.714 21.516 Atomic orbital electron populations 1.21619 0.96957 0.98982 0.99947 1.21751 0.93653 0.98842 1.01423 1.18340 0.93621 0.89210 0.81078 0.99251 1.21590 0.91405 1.38885 1.06963 0.91069 1.25779 1.03414 0.94337 0.94902 1.70053 1.37100 1.38356 1.09832 0.85365 0.79002 0.78927 0.77162 1.19292 1.21275 1.19117 1.46202 1.15246 1.56055 1.17764 1.21378 0.82289 0.78825 0.90527 1.90659 1.52513 1.60578 1.41976 1.21614 0.84603 1.01470 0.96202 1.45064 1.05718 1.12939 1.61892 1.17998 0.86556 0.93382 0.97191 1.21065 1.01129 0.95936 1.00609 1.21292 0.92017 0.98973 0.99011 1.21481 0.97953 0.97839 0.98871 1.21186 0.98429 0.94010 0.96744 1.19814 0.92046 1.00367 1.01475 1.20461 1.01453 0.91096 0.97938 1.21756 0.88391 0.99722 1.06720 1.21698 0.93573 0.80503 0.74235 1.90712 1.45004 1.60198 1.49225 0.93731 0.96290 0.93524 0.91110 0.93633 0.92585 0.76028 0.83629 0.86212 0.84942 0.83335 0.83048 0.82631 0.91839 0.85345 0.86763 0.85281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.40 8.51 71.98 0.61 -4.79 16 2 C -0.12 -5.87 5.45 30.59 0.17 -5.71 16 3 C 0.28 14.82 2.24 44.25 0.10 14.92 16 4 H -0.01 -0.67 7.58 -2.39 -0.02 -0.68 16 5 C -0.55 -29.82 8.73 25.60 0.22 -29.59 16 6 H 0.07 3.62 7.74 -2.91 -0.02 3.60 16 7 C 0.02 0.87 5.29 84.66 0.45 1.31 16 8 N -0.92 -53.38 11.29 21.45 0.24 -53.13 16 9 Si 0.97 42.88 29.54 68.60 2.03 44.91 16 10 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 11 H -0.29 -12.68 7.11 99.48 0.71 -11.97 16 12 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 13 N -0.70 -29.79 5.02 -446.09 -2.24 -32.03 16 14 C 0.48 20.00 6.47 87.66 0.57 20.57 16 15 O -0.58 -28.86 13.57 -3.04 -0.04 -28.90 16 16 C 0.09 2.64 5.62 85.63 0.48 3.12 16 17 N -0.53 -16.29 2.18 -635.89 -1.38 -17.68 16 18 C 0.14 3.73 6.32 38.17 0.24 3.97 16 19 C -0.17 -3.74 9.33 22.39 0.21 -3.53 16 20 C -0.09 -1.66 10.04 22.25 0.22 -1.44 16 21 C -0.14 -2.21 10.04 22.29 0.22 -1.98 16 22 C -0.09 -1.41 9.69 22.24 0.22 -1.20 16 23 C -0.13 -2.96 5.66 -19.77 -0.11 -3.07 16 24 C -0.07 -1.37 6.00 29.80 0.18 -1.20 16 25 C -0.13 -2.66 6.08 29.78 0.18 -2.48 16 26 C 0.51 16.31 7.46 87.65 0.65 16.96 16 27 O -0.57 -23.13 16.60 -3.06 -0.05 -23.18 16 28 H 0.04 1.96 5.64 -2.39 -0.01 1.94 16 29 H 0.02 0.94 7.85 -2.39 -0.02 0.92 16 30 H 0.05 1.87 8.14 -2.38 -0.02 1.85 16 31 H 0.07 3.96 5.95 -2.39 -0.01 3.95 16 32 H 0.04 2.10 8.14 -2.39 -0.02 2.08 16 33 H 0.26 14.63 8.31 -92.71 -0.77 13.86 16 34 H 0.40 14.26 8.54 -92.71 -0.79 13.47 16 35 H 0.15 3.21 5.81 -2.39 -0.01 3.20 16 36 H 0.12 3.55 7.39 -2.39 -0.02 3.53 16 37 H 0.13 2.63 6.02 -2.91 -0.02 2.61 16 38 H 0.15 1.84 8.06 -2.91 -0.02 1.82 16 39 H 0.15 1.44 8.06 -2.91 -0.02 1.41 16 40 H 0.16 1.58 8.06 -2.91 -0.02 1.55 16 41 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 42 H 0.13 1.36 8.06 -2.39 -0.02 1.34 16 43 H 0.11 2.23 8.14 -2.39 -0.02 2.21 16 44 H 0.13 1.93 8.14 -2.39 -0.02 1.91 16 Total: -1.00 -78.72 356.23 3.40 -75.31 By element: Atomic # 1 Polarization: 28.58 SS G_CDS: 0.24 Total: 28.81 kcal Atomic # 6 Polarization: 1.27 SS G_CDS: 4.61 Total: 5.88 kcal Atomic # 7 Polarization: -99.45 SS G_CDS: -3.38 Total: -102.84 kcal Atomic # 8 Polarization: -51.99 SS G_CDS: -0.09 Total: -52.08 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 2.03 Total: 44.91 kcal Total: -78.72 3.40 -75.31 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273864949.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.268 kcal (2) G-P(sol) polarization free energy of solvation -78.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds