Wall clock time and date at job start Tue Mar 31 2020 11:20:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.46670 * 2 1 4 4 N 1.46495 * 109.47409 * 119.99805 * 2 1 3 5 5 C 1.47316 * 126.68745 * 120.01786 * 4 2 1 6 6 C 1.51588 * 103.59095 * 179.77002 * 5 4 2 7 7 O 1.21233 * 127.15765 * 180.24014 * 6 5 4 8 8 N 1.34761 * 105.68515 * 0.32223 * 6 5 4 9 9 C 1.46500 * 124.17918 * 179.97438 * 8 6 5 10 10 H 1.08998 * 109.47519 * 179.36459 * 9 8 6 11 11 C 1.53005 * 109.46710 * 59.36688 * 9 8 6 12 12 C 1.50697 * 109.46952 * 65.00535 * 11 9 8 13 13 H 1.07994 * 120.00564 * 359.97438 * 12 11 9 14 14 C 1.37883 * 119.99867 * 179.97438 * 12 11 9 15 15 N 1.31517 * 119.99856 * 359.97438 * 14 12 11 16 16 Si 1.86794 * 120.00089 * 179.97438 * 14 12 11 17 17 H 1.48491 * 109.47513 * 59.99766 * 16 14 12 18 18 H 1.48503 * 109.47278 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.46962 * 299.99993 * 16 14 12 20 20 C 1.50704 * 109.47136 * 299.37019 * 9 8 6 21 21 C 1.38240 * 119.99681 * 322.40715 * 20 9 8 22 22 C 1.38226 * 119.99423 * 179.79231 * 21 20 9 23 23 C 1.38231 * 120.00567 * 0.43486 * 22 21 20 24 24 C 1.38240 * 119.99814 * 359.81791 * 23 22 21 25 25 C 1.38227 * 119.99610 * 359.97438 * 24 23 22 26 26 C 1.33797 * 111.64663 * 359.65734 * 8 6 5 27 27 O 1.21540 * 123.77329 * 180.22953 * 26 8 6 28 28 H 1.08996 * 109.47290 * 59.99932 * 1 2 3 29 29 H 1.09005 * 109.47312 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46927 * 299.99738 * 1 2 3 31 31 H 1.09000 * 109.46927 * 240.00262 * 2 1 3 32 32 H 1.08997 * 109.46756 * 180.02562 * 3 2 1 33 33 H 1.09004 * 109.47000 * 299.99989 * 3 2 1 34 34 H 1.09000 * 109.47232 * 60.00448 * 3 2 1 35 35 H 1.09003 * 110.59691 * 298.49219 * 5 4 2 36 36 H 1.08995 * 110.59766 * 61.28634 * 5 4 2 37 37 H 1.09005 * 109.46450 * 184.99948 * 11 9 8 38 38 H 1.09000 * 109.47105 * 304.99718 * 11 9 8 39 39 H 0.96996 * 119.99896 * 179.97438 * 15 14 12 40 40 H 1.08004 * 119.99806 * 359.97438 * 21 20 9 41 41 H 1.08007 * 119.99560 * 180.27701 * 22 21 20 42 42 H 1.08005 * 120.00431 * 179.83998 * 23 22 21 43 43 H 1.08002 * 119.99956 * 179.97438 * 24 23 22 44 44 H 1.08006 * 119.99577 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0184 -0.6905 1.1961 5 6 2.8690 -1.8928 1.2327 6 6 3.0582 -2.1503 2.7145 7 8 3.6977 -3.0439 3.2267 8 7 2.3662 -1.1804 3.3442 9 6 2.2750 -1.0471 4.8002 10 1 1.6672 -0.1770 5.0482 11 6 3.6780 -0.8727 5.3852 12 6 4.2655 0.4282 4.9019 13 1 3.6955 1.0665 4.2431 14 6 5.5309 0.8035 5.3008 15 7 6.2249 0.0265 6.1034 16 14 6.2594 2.4156 4.7011 17 1 5.3965 3.5420 5.1388 18 1 7.6211 2.5850 5.2689 19 1 6.3402 2.4011 3.2184 20 6 1.6398 -2.2851 5.3792 21 6 0.6102 -2.9138 4.7041 22 6 0.0304 -4.0517 5.2331 23 6 0.4741 -4.5558 6.4413 24 6 1.5002 -3.9241 7.1188 25 6 2.0828 -2.7887 6.5878 26 6 1.7782 -0.3500 2.4752 27 8 1.1026 0.6051 2.8047 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 3.1299 1.4426 -0.0005 33 1 1.6765 1.9564 -0.8900 34 1 1.6766 1.9564 0.8900 35 1 2.3654 -2.7335 0.7555 36 1 3.8279 -1.6988 0.7523 37 1 3.6191 -0.8626 6.4736 38 1 4.3113 -1.6994 5.0632 39 1 7.1152 0.2904 6.3837 40 1 0.2608 -2.5175 3.7621 41 1 -0.7710 -4.5455 4.7035 42 1 0.0194 -5.4435 6.8558 43 1 1.8466 -4.3177 8.0630 44 1 2.8848 -2.2953 7.1170 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000277854728.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:20:07 Heat of formation + Delta-G solvation = -13.872124 kcal Electronic energy + Delta-G solvation = -27778.989302 eV Core-core repulsion = 24083.353610 eV Total energy + Delta-G solvation = -3695.635693 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.94332 -38.97705 -38.07440 -36.35278 -35.40269 -34.11098 -32.45795 -30.92030 -30.44399 -28.67201 -27.19369 -27.14777 -25.26698 -23.10956 -22.68340 -21.94331 -21.59365 -19.94265 -18.94388 -17.37046 -16.75163 -16.39151 -16.03131 -15.87009 -15.44425 -14.95111 -14.73239 -14.27764 -14.24479 -13.92058 -13.81732 -13.60519 -13.51861 -13.09221 -12.96300 -12.65214 -12.43517 -12.21069 -12.08371 -12.05436 -11.61040 -11.41465 -11.30120 -11.20848 -10.93233 -10.70101 -10.62094 -10.56822 -9.95809 -9.91748 -9.56041 -9.16292 -8.96350 -8.70681 -8.54422 -8.38766 -8.24277 -6.03626 -4.05998 1.67903 1.77667 2.22018 2.52258 3.31380 3.35766 3.37542 3.39612 3.59175 4.17640 4.42843 4.44153 4.72802 4.98290 5.10312 5.15508 5.20708 5.23658 5.30080 5.32182 5.33052 5.50190 5.53847 5.61183 5.65292 5.82822 5.86412 5.89674 5.95162 6.09983 6.21210 6.27634 6.31309 6.41154 6.50213 6.52927 6.76872 6.80572 6.85942 7.07550 7.35358 7.48288 7.63528 7.77098 7.93276 8.00747 8.30773 8.61746 8.98650 9.57776 11.07323 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.008418 B = 0.007648 C = 0.004550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3325.365877 B = 3660.311014 C = 6151.944708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.180 3.820 3 C -0.172 4.172 4 N -0.631 5.631 5 C 0.062 3.938 6 C 0.524 3.476 7 O -0.460 6.460 8 N -0.549 5.549 9 C 0.188 3.812 10 H 0.108 0.892 11 C 0.012 3.988 12 C -0.521 4.521 13 H 0.055 0.945 14 C 0.063 3.937 15 N -0.890 5.890 16 Si 0.890 3.110 17 H -0.275 1.275 18 H -0.287 1.287 19 H -0.279 1.279 20 C -0.079 4.079 21 C -0.115 4.115 22 C -0.125 4.125 23 C -0.129 4.129 24 C -0.121 4.121 25 C -0.096 4.096 26 C 0.706 3.294 27 O -0.545 6.545 28 H 0.067 0.933 29 H 0.055 0.945 30 H 0.074 0.926 31 H 0.092 0.908 32 H 0.059 0.941 33 H 0.066 0.934 34 H 0.075 0.925 35 H 0.112 0.888 36 H 0.115 0.885 37 H 0.040 0.960 38 H 0.041 0.959 39 H 0.262 0.738 40 H 0.108 0.892 41 H 0.114 0.886 42 H 0.115 0.885 43 H 0.120 0.880 44 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.041 -5.897 -10.286 16.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.079 3.921 3 C -0.230 4.230 4 N -0.371 5.371 5 C -0.065 4.065 6 C 0.311 3.689 7 O -0.329 6.329 8 N -0.292 5.292 9 C 0.088 3.912 10 H 0.126 0.874 11 C -0.025 4.025 12 C -0.559 4.559 13 H 0.073 0.927 14 C -0.139 4.139 15 N -0.529 5.529 16 Si 0.718 3.282 17 H -0.201 1.201 18 H -0.212 1.212 19 H -0.204 1.204 20 C -0.080 4.080 21 C -0.133 4.133 22 C -0.143 4.143 23 C -0.147 4.147 24 C -0.139 4.139 25 C -0.114 4.114 26 C 0.409 3.591 27 O -0.420 6.420 28 H 0.086 0.914 29 H 0.075 0.925 30 H 0.093 0.907 31 H 0.110 0.890 32 H 0.078 0.922 33 H 0.085 0.915 34 H 0.094 0.906 35 H 0.129 0.871 36 H 0.133 0.867 37 H 0.058 0.942 38 H 0.059 0.941 39 H 0.071 0.929 40 H 0.126 0.874 41 H 0.132 0.868 42 H 0.133 0.867 43 H 0.138 0.862 44 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -10.926 -5.806 -9.758 15.758 hybrid contribution 0.628 0.876 -0.412 1.154 sum -10.298 -4.930 -10.170 15.290 Atomic orbital electron populations 1.22220 0.94653 1.02341 1.03433 1.20792 0.94179 0.92859 0.84287 1.22236 1.01788 0.95583 1.03353 1.47790 1.53969 1.30029 1.05315 1.22486 0.97906 0.89698 0.96409 1.20576 0.78078 0.81339 0.88935 1.90786 1.37171 1.31607 1.73339 1.46296 1.46707 1.27413 1.08832 1.20509 1.01714 0.94701 0.74293 0.87392 1.19615 0.87748 0.98496 0.96641 1.21069 1.00536 1.04565 1.29753 0.92681 1.24937 0.97002 0.96925 0.95060 1.69943 1.11754 1.37091 1.34120 0.86684 0.78223 0.84293 0.79003 1.20098 1.21224 1.20436 1.20279 0.95416 0.96865 0.95477 1.20876 0.96496 0.96213 0.99710 1.20966 1.00276 0.96686 0.96403 1.21043 0.97994 0.99985 0.95682 1.21137 0.96731 0.96082 0.99944 1.21353 0.99014 0.95615 0.95449 1.15841 0.79858 0.82356 0.81040 1.90893 1.42496 1.28288 1.80277 0.91378 0.92540 0.90718 0.89032 0.92165 0.91471 0.90585 0.87068 0.86743 0.94238 0.94101 0.92854 0.87360 0.86766 0.86681 0.86217 0.84427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.73 9.23 37.16 0.34 -1.39 16 2 C 0.18 2.00 3.58 -67.93 -0.24 1.75 16 3 C -0.17 -2.06 9.23 37.16 0.34 -1.72 16 4 N -0.63 -9.06 2.88 -172.38 -0.50 -9.56 16 5 C 0.06 0.81 7.65 -4.31 -0.03 0.77 16 6 C 0.52 9.78 7.35 -10.56 -0.08 9.70 16 7 O -0.46 -9.95 16.24 5.60 0.09 -9.86 16 8 N -0.55 -10.88 1.44 -114.83 -0.17 -11.04 16 9 C 0.19 4.06 2.51 -69.08 -0.17 3.88 16 10 H 0.11 2.43 7.45 -51.93 -0.39 2.04 16 11 C 0.01 0.31 3.67 -27.88 -0.10 0.21 16 12 C -0.52 -14.59 8.84 -34.44 -0.30 -14.89 16 13 H 0.05 1.57 7.74 -52.49 -0.41 1.16 16 14 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 15 N -0.89 -26.42 13.29 55.43 0.74 -25.68 16 16 Si 0.89 21.97 29.54 -169.99 -5.02 16.94 16 17 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 18 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 19 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 20 C -0.08 -1.53 4.94 -104.62 -0.52 -2.04 16 21 C -0.11 -1.95 9.06 -39.58 -0.36 -2.30 16 22 C -0.13 -1.84 10.05 -39.59 -0.40 -2.24 16 23 C -0.13 -1.83 10.05 -39.58 -0.40 -2.23 16 24 C -0.12 -1.88 10.05 -39.58 -0.40 -2.28 16 25 C -0.10 -1.77 9.12 -39.59 -0.36 -2.13 16 26 C 0.71 13.20 7.79 -88.02 -0.69 12.51 16 27 O -0.55 -11.49 14.64 5.33 0.08 -11.41 16 28 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.07 0.98 6.96 -51.93 -0.36 0.62 16 31 H 0.09 0.73 8.12 -51.93 -0.42 0.31 16 32 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.08 1.15 6.96 -51.93 -0.36 0.79 16 35 H 0.11 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.11 1.32 8.14 -51.93 -0.42 0.90 16 37 H 0.04 1.04 6.29 -51.93 -0.33 0.71 16 38 H 0.04 1.15 6.69 -51.93 -0.35 0.80 16 39 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 40 H 0.11 1.78 7.64 -52.48 -0.40 1.38 16 41 H 0.11 1.36 8.06 -52.48 -0.42 0.94 16 42 H 0.12 1.29 8.06 -52.48 -0.42 0.87 16 43 H 0.12 1.56 8.06 -52.49 -0.42 1.14 16 44 H 0.14 2.67 5.89 -52.48 -0.31 2.36 16 LS Contribution 362.99 15.07 5.47 5.47 Total: -1.00 -33.61 362.99 -9.03 -42.64 By element: Atomic # 1 Polarization: 9.46 SS G_CDS: -6.26 Total: 3.20 kcal Atomic # 6 Polarization: 2.76 SS G_CDS: -3.46 Total: -0.70 kcal Atomic # 7 Polarization: -46.36 SS G_CDS: 0.07 Total: -46.28 kcal Atomic # 8 Polarization: -21.45 SS G_CDS: 0.17 Total: -21.28 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -33.61 -9.03 -42.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000277854728.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.770 kcal (2) G-P(sol) polarization free energy of solvation -33.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds