Wall clock time and date at job start Tue Mar 31 2020 11:20:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.46670 * 2 1 4 4 N 1.46495 * 109.47409 * 119.99805 * 2 1 3 5 5 C 1.47316 * 126.68745 * 120.01786 * 4 2 1 6 6 C 1.51588 * 103.59095 * 179.77002 * 5 4 2 7 7 O 1.21233 * 127.15765 * 180.24014 * 6 5 4 8 8 N 1.34761 * 105.68515 * 0.32223 * 6 5 4 9 9 C 1.46500 * 124.17918 * 179.97438 * 8 6 5 10 10 H 1.08998 * 109.47519 * 179.36459 * 9 8 6 11 11 C 1.53005 * 109.46710 * 59.36688 * 9 8 6 12 12 C 1.50697 * 109.46952 * 65.00535 * 11 9 8 13 13 H 1.07994 * 120.00564 * 359.97438 * 12 11 9 14 14 C 1.37883 * 119.99867 * 179.97438 * 12 11 9 15 15 N 1.31517 * 119.99856 * 359.97438 * 14 12 11 16 16 Si 1.86794 * 120.00089 * 179.97438 * 14 12 11 17 17 H 1.48491 * 109.47513 * 59.99766 * 16 14 12 18 18 H 1.48503 * 109.47278 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.46962 * 299.99993 * 16 14 12 20 20 C 1.50704 * 109.47136 * 299.37019 * 9 8 6 21 21 C 1.38240 * 119.99681 * 322.40715 * 20 9 8 22 22 C 1.38226 * 119.99423 * 179.79231 * 21 20 9 23 23 C 1.38231 * 120.00567 * 0.43486 * 22 21 20 24 24 C 1.38240 * 119.99814 * 359.81791 * 23 22 21 25 25 C 1.38227 * 119.99610 * 359.97438 * 24 23 22 26 26 C 1.33797 * 111.64663 * 359.65734 * 8 6 5 27 27 O 1.21540 * 123.77329 * 180.22953 * 26 8 6 28 28 H 1.08996 * 109.47290 * 59.99932 * 1 2 3 29 29 H 1.09005 * 109.47312 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46927 * 299.99738 * 1 2 3 31 31 H 1.09000 * 109.46927 * 240.00262 * 2 1 3 32 32 H 1.08997 * 109.46756 * 180.02562 * 3 2 1 33 33 H 1.09004 * 109.47000 * 299.99989 * 3 2 1 34 34 H 1.09000 * 109.47232 * 60.00448 * 3 2 1 35 35 H 1.09003 * 110.59691 * 298.49219 * 5 4 2 36 36 H 1.08995 * 110.59766 * 61.28634 * 5 4 2 37 37 H 1.09005 * 109.46450 * 184.99948 * 11 9 8 38 38 H 1.09000 * 109.47105 * 304.99718 * 11 9 8 39 39 H 0.96996 * 119.99896 * 179.97438 * 15 14 12 40 40 H 1.08004 * 119.99806 * 359.97438 * 21 20 9 41 41 H 1.08007 * 119.99560 * 180.27701 * 22 21 20 42 42 H 1.08005 * 120.00431 * 179.83998 * 23 22 21 43 43 H 1.08002 * 119.99956 * 179.97438 * 24 23 22 44 44 H 1.08006 * 119.99577 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0184 -0.6905 1.1961 5 6 2.8690 -1.8928 1.2327 6 6 3.0582 -2.1503 2.7145 7 8 3.6977 -3.0439 3.2267 8 7 2.3662 -1.1804 3.3442 9 6 2.2750 -1.0471 4.8002 10 1 1.6672 -0.1770 5.0482 11 6 3.6780 -0.8727 5.3852 12 6 4.2655 0.4282 4.9019 13 1 3.6955 1.0665 4.2431 14 6 5.5309 0.8035 5.3008 15 7 6.2249 0.0265 6.1034 16 14 6.2594 2.4156 4.7011 17 1 5.3965 3.5420 5.1388 18 1 7.6211 2.5850 5.2689 19 1 6.3402 2.4011 3.2184 20 6 1.6398 -2.2851 5.3792 21 6 0.6102 -2.9138 4.7041 22 6 0.0304 -4.0517 5.2331 23 6 0.4741 -4.5558 6.4413 24 6 1.5002 -3.9241 7.1188 25 6 2.0828 -2.7887 6.5878 26 6 1.7782 -0.3500 2.4752 27 8 1.1026 0.6051 2.8047 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 3.1299 1.4426 -0.0005 33 1 1.6765 1.9564 -0.8900 34 1 1.6766 1.9564 0.8900 35 1 2.3654 -2.7335 0.7555 36 1 3.8279 -1.6988 0.7523 37 1 3.6191 -0.8626 6.4736 38 1 4.3113 -1.6994 5.0632 39 1 7.1152 0.2904 6.3837 40 1 0.2608 -2.5175 3.7621 41 1 -0.7710 -4.5455 4.7035 42 1 0.0194 -5.4435 6.8558 43 1 1.8466 -4.3177 8.0630 44 1 2.8848 -2.2953 7.1170 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000277854728.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:20:05 Heat of formation + Delta-G solvation = -33.211158 kcal Electronic energy + Delta-G solvation = -27779.827906 eV Core-core repulsion = 24083.353610 eV Total energy + Delta-G solvation = -3696.474296 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 1.95 seconds Orbital eigenvalues (eV) -43.34840 -40.30672 -39.52360 -37.61637 -36.94911 -35.67061 -34.31516 -32.23782 -31.71485 -30.45636 -28.38338 -28.06515 -27.06012 -24.71804 -24.02356 -23.28455 -23.02524 -21.30043 -20.32436 -18.96495 -18.28631 -18.02226 -17.42454 -17.29529 -16.67375 -16.61909 -16.24922 -15.82007 -15.61399 -15.19337 -15.14965 -14.87896 -14.67617 -14.59401 -14.36029 -14.12853 -13.73867 -13.66590 -13.42354 -13.12249 -13.07681 -12.97216 -12.79042 -12.64688 -12.35631 -12.19980 -12.14741 -12.04700 -11.75924 -11.41271 -11.33021 -10.99874 -10.62516 -10.54221 -9.89863 -9.83054 -9.61557 -8.26468 -6.36707 0.37259 0.48724 0.80103 1.24516 1.30451 1.33217 1.41796 2.08649 2.18561 2.33076 2.87549 3.06145 3.17344 3.69221 3.79836 3.96577 4.10155 4.12304 4.15619 4.25937 4.31026 4.34359 4.36558 4.49736 4.57410 4.63509 4.65303 4.74831 4.76592 4.78812 4.96159 5.03326 5.09829 5.13869 5.31510 5.37476 5.44061 5.50579 5.54749 5.60090 5.64656 5.71595 5.73381 6.10059 6.12049 6.33510 6.57821 6.74715 7.18838 7.30796 8.84783 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.008418 B = 0.007648 C = 0.004550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3325.365877 B = 3660.311014 C = 6151.944708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.172 3.828 3 C -0.170 4.170 4 N -0.617 5.617 5 C 0.075 3.925 6 C 0.509 3.491 7 O -0.501 6.501 8 N -0.559 5.559 9 C 0.198 3.802 10 H 0.083 0.917 11 C 0.030 3.970 12 C -0.534 4.534 13 H 0.044 0.956 14 C 0.012 3.988 15 N -0.923 5.923 16 Si 0.954 3.046 17 H -0.272 1.272 18 H -0.276 1.276 19 H -0.270 1.270 20 C -0.103 4.103 21 C -0.121 4.121 22 C -0.118 4.118 23 C -0.118 4.118 24 C -0.121 4.121 25 C -0.124 4.124 26 C 0.696 3.304 27 O -0.581 6.581 28 H 0.097 0.903 29 H 0.067 0.933 30 H 0.036 0.964 31 H 0.142 0.858 32 H 0.051 0.949 33 H 0.100 0.900 34 H 0.034 0.966 35 H 0.163 0.837 36 H 0.141 0.859 37 H 0.018 0.982 38 H 0.009 0.991 39 H 0.265 0.735 40 H 0.110 0.890 41 H 0.153 0.847 42 H 0.158 0.842 43 H 0.144 0.856 44 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.344 -7.357 -13.164 19.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.073 3.927 3 C -0.228 4.228 4 N -0.357 5.357 5 C -0.050 4.050 6 C 0.298 3.702 7 O -0.373 6.373 8 N -0.302 5.302 9 C 0.096 3.904 10 H 0.101 0.899 11 C -0.007 4.007 12 C -0.572 4.572 13 H 0.062 0.938 14 C -0.187 4.187 15 N -0.562 5.562 16 Si 0.779 3.221 17 H -0.197 1.197 18 H -0.200 1.200 19 H -0.195 1.195 20 C -0.104 4.104 21 C -0.140 4.140 22 C -0.135 4.135 23 C -0.136 4.136 24 C -0.139 4.139 25 C -0.143 4.143 26 C 0.399 3.601 27 O -0.458 6.458 28 H 0.115 0.885 29 H 0.086 0.914 30 H 0.055 0.945 31 H 0.159 0.841 32 H 0.070 0.930 33 H 0.118 0.882 34 H 0.053 0.947 35 H 0.180 0.820 36 H 0.159 0.841 37 H 0.036 0.964 38 H 0.027 0.973 39 H 0.074 0.926 40 H 0.128 0.872 41 H 0.170 0.830 42 H 0.176 0.824 43 H 0.162 0.838 44 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -12.237 -7.266 -12.691 19.068 hybrid contribution 0.987 1.299 0.505 1.708 sum -11.250 -5.967 -12.186 17.625 Atomic orbital electron populations 1.22174 0.93952 1.02927 1.02982 1.21277 0.94822 0.92429 0.84187 1.22231 1.01162 0.96469 1.02940 1.48061 1.53078 1.30148 1.04370 1.22705 0.99570 0.90639 0.92096 1.21575 0.76906 0.80279 0.91444 1.90752 1.38714 1.33031 1.74804 1.46379 1.47334 1.28253 1.08220 1.19987 0.98725 0.95552 0.76128 0.89864 1.19279 0.89798 0.96209 0.95454 1.21297 1.00916 1.05371 1.29629 0.93786 1.25778 0.97370 1.00447 0.95118 1.70066 1.12145 1.38893 1.35104 0.85669 0.77712 0.79876 0.78852 1.19688 1.20046 1.19509 1.20125 0.97145 0.96760 0.96352 1.20950 0.96115 0.97134 0.99776 1.21408 1.00285 0.95317 0.96520 1.21525 0.96564 1.00522 0.94957 1.21436 0.96797 0.94750 1.00906 1.21286 0.99655 0.97504 0.95825 1.16086 0.79776 0.81878 0.82387 1.90862 1.44102 1.29695 1.81122 0.88478 0.91413 0.94463 0.84073 0.93029 0.88166 0.94686 0.82012 0.84140 0.96361 0.97291 0.92591 0.87211 0.82963 0.82431 0.83806 0.87183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.92 9.23 71.98 0.66 -2.26 16 2 C 0.17 3.27 3.58 44.99 0.16 3.43 16 3 C -0.17 -3.81 9.23 71.98 0.66 -3.14 16 4 N -0.62 -16.68 2.88 -817.72 -2.36 -19.03 16 5 C 0.07 1.76 7.65 85.76 0.66 2.41 16 6 C 0.51 19.21 7.35 87.94 0.65 19.86 16 7 O -0.50 -22.43 16.24 -2.89 -0.05 -22.48 16 8 N -0.56 -23.15 1.44 -754.45 -1.09 -24.24 16 9 C 0.20 9.26 2.51 44.25 0.11 9.37 16 10 H 0.08 4.17 7.45 -2.39 -0.02 4.15 16 11 C 0.03 1.66 3.67 29.85 0.11 1.77 16 12 C -0.53 -31.74 8.84 25.60 0.23 -31.51 16 13 H 0.04 2.66 7.74 -2.91 -0.02 2.63 16 14 C 0.01 0.70 5.46 84.66 0.46 1.16 16 15 N -0.92 -57.07 13.29 21.45 0.28 -56.78 16 16 Si 0.95 46.19 29.54 68.60 2.03 48.21 16 17 H -0.27 -12.91 7.11 99.48 0.71 -12.20 16 18 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 19 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 20 C -0.10 -4.20 4.94 -19.86 -0.10 -4.29 16 21 C -0.12 -4.12 9.06 22.27 0.20 -3.92 16 22 C -0.12 -3.15 10.05 22.27 0.22 -2.93 16 23 C -0.12 -3.00 10.05 22.27 0.22 -2.78 16 24 C -0.12 -3.70 10.05 22.27 0.22 -3.48 16 25 C -0.12 -4.90 9.12 22.27 0.20 -4.70 16 26 C 0.70 26.71 7.79 179.44 1.40 28.11 16 27 O -0.58 -25.89 14.64 -3.84 -0.06 -25.95 16 28 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.07 1.07 8.14 -2.38 -0.02 1.05 16 30 H 0.04 0.96 6.96 -2.39 -0.02 0.95 16 31 H 0.14 1.41 8.12 -2.39 -0.02 1.40 16 32 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 34 H 0.03 1.07 6.96 -2.39 -0.02 1.06 16 35 H 0.16 2.31 8.14 -2.39 -0.02 2.29 16 36 H 0.14 2.73 8.14 -2.39 -0.02 2.71 16 37 H 0.02 1.07 6.29 -2.38 -0.01 1.05 16 38 H 0.01 0.54 6.69 -2.39 -0.02 0.52 16 39 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 40 H 0.11 3.61 7.64 -2.91 -0.02 3.59 16 41 H 0.15 2.93 8.06 -2.91 -0.02 2.90 16 42 H 0.16 2.72 8.06 -2.91 -0.02 2.70 16 43 H 0.14 3.59 8.06 -2.91 -0.02 3.56 16 44 H 0.11 4.82 5.89 -2.91 -0.02 4.80 16 Total: -1.00 -81.28 362.99 5.84 -75.44 By element: Atomic # 1 Polarization: 16.72 SS G_CDS: 1.00 Total: 17.72 kcal Atomic # 6 Polarization: 1.03 SS G_CDS: 6.08 Total: 7.10 kcal Atomic # 7 Polarization: -96.89 SS G_CDS: -3.16 Total: -100.05 kcal Atomic # 8 Polarization: -48.32 SS G_CDS: -0.10 Total: -48.43 kcal Atomic # 14 Polarization: 46.19 SS G_CDS: 2.03 Total: 48.21 kcal Total: -81.28 5.84 -75.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000277854728.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.231 kcal (2) G-P(sol) polarization free energy of solvation -81.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.95 seconds