Wall clock time and date at job start Tue Mar 31 2020 11:20:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47293 * 2 1 4 4 N 1.46501 * 109.47095 * 179.97438 * 3 2 1 5 5 C 1.47305 * 126.69025 * 269.97862 * 4 3 2 6 6 C 1.51588 * 103.59219 * 179.84387 * 5 4 3 7 7 O 1.21233 * 127.16141 * 180.24223 * 6 5 4 8 8 N 1.34774 * 105.68375 * 0.32307 * 6 5 4 9 9 C 1.46496 * 124.17783 * 179.97438 * 8 6 5 10 10 H 1.08998 * 109.47149 * 179.36640 * 9 8 6 11 11 C 1.53001 * 109.47160 * 59.36704 * 9 8 6 12 12 C 1.50700 * 109.47131 * 64.99541 * 11 9 8 13 13 H 1.08000 * 120.00066 * 0.02562 * 12 11 9 14 14 C 1.37877 * 120.00053 * 179.97438 * 12 11 9 15 15 N 1.31517 * 119.99976 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 120.00004 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.47213 * 0.02562 * 16 14 12 18 18 H 1.48495 * 109.47300 * 120.00508 * 16 14 12 19 19 H 1.48509 * 109.47126 * 240.00745 * 16 14 12 20 20 C 1.50702 * 109.47443 * 299.36712 * 9 8 6 21 21 C 1.38240 * 119.99759 * 322.41402 * 20 9 8 22 22 C 1.38236 * 119.99853 * 179.78835 * 21 20 9 23 23 C 1.38240 * 119.99936 * 0.43564 * 22 21 20 24 24 C 1.38232 * 119.99811 * 359.81615 * 23 22 21 25 25 C 1.38230 * 120.00195 * 142.68214 * 20 9 8 26 26 C 1.33791 * 111.64091 * 359.65759 * 8 6 5 27 27 O 1.21540 * 123.76993 * 180.22769 * 26 8 6 28 28 H 1.08995 * 109.47157 * 299.99657 * 1 2 3 29 29 H 1.09000 * 109.47160 * 60.00457 * 1 2 3 30 30 H 1.09005 * 109.46926 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47481 * 239.99470 * 2 1 3 32 32 H 1.09005 * 109.47244 * 120.00274 * 2 1 3 33 33 H 1.09004 * 109.47206 * 59.99805 * 3 2 1 34 34 H 1.09001 * 109.46716 * 300.00404 * 3 2 1 35 35 H 1.08996 * 110.60234 * 298.56351 * 5 4 3 36 36 H 1.09000 * 110.60132 * 61.36152 * 5 4 3 37 37 H 1.08998 * 109.47331 * 184.99760 * 11 9 8 38 38 H 1.09001 * 109.46977 * 305.00360 * 11 9 8 39 39 H 0.97003 * 119.99923 * 179.97438 * 15 14 12 40 40 H 1.08004 * 119.99806 * 359.97438 * 21 20 9 41 41 H 1.07994 * 119.99650 * 180.27151 * 22 21 20 42 42 H 1.07993 * 119.99635 * 179.83722 * 23 22 21 43 43 H 1.08002 * 119.99751 * 180.02562 * 24 23 22 44 44 H 1.08006 * 119.99990 * 359.97438 * 25 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.3847 1.4430 1.1822 6 6 5.7793 1.4386 0.5881 7 8 6.8317 1.4335 1.1900 8 7 5.6059 1.4435 -0.7484 9 6 6.7020 1.4421 -1.7204 10 1 6.2920 1.4355 -2.7304 11 6 7.5663 0.1968 -1.5128 12 6 6.7557 -1.0349 -1.8241 13 1 5.7271 -0.9390 -2.1390 14 6 7.3275 -2.2841 -1.7079 15 7 8.5803 -2.4008 -1.3249 16 14 6.3230 -3.8108 -2.0945 17 1 4.9517 -3.4112 -2.5010 18 1 6.9683 -4.5607 -3.2018 19 1 6.2503 -4.6741 -0.8883 20 6 7.5451 2.6764 -1.5287 21 6 6.9458 3.8794 -1.2054 22 6 7.7196 5.0107 -1.0252 23 6 9.0918 4.9409 -1.1771 24 6 9.6906 3.7390 -1.5055 25 6 8.9172 2.6068 -1.6815 26 6 4.3092 1.4428 -1.0778 27 8 3.9031 1.4425 -2.2234 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 1.8934 -0.5139 0.8900 33 1 1.6767 1.9564 0.8900 34 1 1.6766 1.9563 -0.8900 35 1 4.2224 2.3394 1.7807 36 1 4.2214 0.5479 1.7823 37 1 8.4308 0.2399 -2.1753 38 1 7.9037 0.1574 -0.4771 39 1 8.9825 -3.2797 -1.2428 40 1 5.8733 3.9348 -1.0907 41 1 7.2517 5.9495 -0.7683 42 1 9.6960 5.8252 -1.0389 43 1 10.7627 3.6844 -1.6237 44 1 9.3851 1.6677 -1.9379 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000278129816.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:20:14 Heat of formation + Delta-G solvation = -18.255231 kcal Electronic energy + Delta-G solvation = -27409.168202 eV Core-core repulsion = 23713.342444 eV Total energy + Delta-G solvation = -3695.825759 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.92636 -38.94553 -38.01705 -36.27349 -35.39174 -34.23390 -32.64866 -31.39160 -30.53797 -28.88691 -27.94355 -26.04164 -24.97628 -22.90081 -22.30271 -21.80160 -21.56262 -20.44062 -19.19936 -17.39801 -16.69386 -16.39645 -16.32628 -15.92007 -15.34262 -14.98717 -14.73626 -14.51919 -14.24923 -14.21233 -13.91774 -13.65550 -13.56917 -13.11488 -13.06195 -12.73409 -12.44417 -12.23233 -12.09252 -12.04672 -11.60692 -11.44326 -11.29919 -10.95406 -10.84443 -10.69959 -10.62347 -10.58092 -10.11674 -9.94015 -9.61167 -9.14331 -8.98686 -8.72326 -8.54762 -8.39921 -8.24885 -6.04391 -4.06622 1.67431 1.77258 2.19745 2.51833 3.28397 3.36348 3.38181 3.42213 3.56293 4.17189 4.42762 4.44243 4.75102 4.87954 5.09837 5.16133 5.19813 5.21372 5.23107 5.30199 5.31800 5.32987 5.49718 5.51147 5.65415 5.77251 5.84004 5.90992 5.94368 6.06348 6.14276 6.19074 6.28064 6.37594 6.40533 6.51984 6.73624 6.78162 6.85570 7.06835 7.34948 7.47385 7.61533 7.75285 7.92593 7.98787 8.30138 8.58024 8.98534 9.57401 11.06601 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.008737 B = 0.006760 C = 0.004264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3203.900736 B = 4140.955395 C = 6565.035353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.149 4.149 3 C 0.156 3.844 4 N -0.633 5.633 5 C 0.062 3.938 6 C 0.525 3.475 7 O -0.459 6.459 8 N -0.549 5.549 9 C 0.188 3.812 10 H 0.109 0.891 11 C 0.011 3.989 12 C -0.520 4.520 13 H 0.056 0.944 14 C 0.062 3.938 15 N -0.890 5.890 16 Si 0.888 3.112 17 H -0.272 1.272 18 H -0.282 1.282 19 H -0.284 1.284 20 C -0.079 4.079 21 C -0.115 4.115 22 C -0.125 4.125 23 C -0.129 4.129 24 C -0.121 4.121 25 C -0.096 4.096 26 C 0.704 3.296 27 O -0.547 6.547 28 H 0.054 0.946 29 H 0.056 0.944 30 H 0.057 0.943 31 H 0.072 0.928 32 H 0.066 0.934 33 H 0.081 0.919 34 H 0.086 0.914 35 H 0.112 0.888 36 H 0.115 0.885 37 H 0.040 0.960 38 H 0.041 0.959 39 H 0.261 0.739 40 H 0.108 0.892 41 H 0.115 0.885 42 H 0.115 0.885 43 H 0.120 0.880 44 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.632 11.833 5.171 16.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.188 4.188 3 C 0.034 3.966 4 N -0.373 5.373 5 C -0.064 4.064 6 C 0.311 3.689 7 O -0.328 6.328 8 N -0.292 5.292 9 C 0.088 3.912 10 H 0.126 0.874 11 C -0.026 4.026 12 C -0.558 4.558 13 H 0.074 0.926 14 C -0.140 4.140 15 N -0.529 5.529 16 Si 0.716 3.284 17 H -0.197 1.197 18 H -0.208 1.208 19 H -0.210 1.210 20 C -0.080 4.080 21 C -0.133 4.133 22 C -0.143 4.143 23 C -0.147 4.147 24 C -0.139 4.139 25 C -0.114 4.114 26 C 0.407 3.593 27 O -0.421 6.421 28 H 0.073 0.927 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.091 0.909 32 H 0.085 0.915 33 H 0.100 0.900 34 H 0.104 0.896 35 H 0.130 0.870 36 H 0.133 0.867 37 H 0.058 0.942 38 H 0.059 0.941 39 H 0.070 0.930 40 H 0.127 0.873 41 H 0.133 0.867 42 H 0.133 0.867 43 H 0.138 0.862 44 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -9.202 11.703 4.854 15.659 hybrid contribution -0.522 -1.076 -0.076 1.198 sum -9.724 10.627 4.778 15.176 Atomic orbital electron populations 1.21673 0.95000 1.02065 1.01748 1.22004 0.96066 0.97251 1.03455 1.21302 0.74849 0.97194 1.03230 1.47602 1.05937 1.78216 1.05537 1.22468 0.87967 1.05540 0.90465 1.20581 0.90784 0.74985 0.82570 1.90788 1.30669 1.45188 1.66159 1.46277 1.07296 1.66680 1.08942 1.20520 0.84806 0.94593 0.91326 0.87375 1.19628 0.94497 0.88945 0.99521 1.21144 0.98154 0.90718 1.45761 0.92585 1.24940 0.94899 0.98982 0.95141 1.69965 1.12124 1.23650 1.47158 0.86589 0.80596 0.83227 0.78008 1.19702 1.20846 1.21044 1.20270 0.94624 0.94532 0.98600 1.20882 0.99190 0.92615 1.00642 1.20970 0.94089 0.97853 1.01408 1.21043 0.94768 0.97705 1.01179 1.21138 0.99667 0.92848 1.00246 1.21355 0.92908 0.99129 0.98029 1.15868 0.81047 0.77259 0.85142 1.90922 1.77133 1.55290 1.18758 0.92694 0.92472 0.92402 0.90941 0.91538 0.90025 0.89567 0.86972 0.86742 0.94191 0.94060 0.92967 0.87347 0.86743 0.86671 0.86209 0.84416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 9.91 37.16 0.37 -0.87 16 2 C -0.15 -1.64 6.26 -26.73 -0.17 -1.81 16 3 C 0.16 1.67 6.15 -4.04 -0.02 1.65 16 4 N -0.63 -9.07 3.02 -180.02 -0.54 -9.61 16 5 C 0.06 0.81 7.66 -4.32 -0.03 0.77 16 6 C 0.52 9.74 7.35 -10.55 -0.08 9.66 16 7 O -0.46 -9.89 16.24 5.60 0.09 -9.80 16 8 N -0.55 -10.90 1.44 -114.83 -0.17 -11.06 16 9 C 0.19 4.06 2.51 -69.08 -0.17 3.88 16 10 H 0.11 2.44 7.45 -51.93 -0.39 2.05 16 11 C 0.01 0.29 3.67 -27.88 -0.10 0.18 16 12 C -0.52 -14.55 8.84 -34.44 -0.30 -14.86 16 13 H 0.06 1.60 7.74 -52.49 -0.41 1.20 16 14 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 15 N -0.89 -26.40 13.29 55.43 0.74 -25.67 16 16 Si 0.89 21.93 29.54 -169.99 -5.02 16.91 16 17 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 18 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 19 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 20 C -0.08 -1.52 4.94 -104.62 -0.52 -2.04 16 21 C -0.11 -1.95 9.06 -39.58 -0.36 -2.31 16 22 C -0.13 -1.83 10.05 -39.58 -0.40 -2.23 16 23 C -0.13 -1.82 10.05 -39.58 -0.40 -2.22 16 24 C -0.12 -1.88 10.05 -39.58 -0.40 -2.27 16 25 C -0.10 -1.77 9.12 -39.58 -0.36 -2.13 16 26 C 0.70 13.34 8.31 -88.02 -0.73 12.61 16 27 O -0.55 -11.92 16.91 5.33 0.09 -11.83 16 28 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 32 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.09 0.96 8.03 -51.93 -0.42 0.55 16 35 H 0.11 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.11 1.31 8.14 -51.93 -0.42 0.89 16 37 H 0.04 1.05 6.29 -51.93 -0.33 0.72 16 38 H 0.04 1.15 6.69 -51.93 -0.35 0.81 16 39 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 40 H 0.11 1.77 7.64 -52.48 -0.40 1.37 16 41 H 0.11 1.36 8.06 -52.49 -0.42 0.93 16 42 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 43 H 0.12 1.56 8.06 -52.49 -0.42 1.14 16 44 H 0.14 2.67 5.89 -52.48 -0.31 2.36 16 LS Contribution 368.48 15.07 5.55 5.55 Total: -1.00 -34.09 368.48 -9.41 -43.50 By element: Atomic # 1 Polarization: 8.70 SS G_CDS: -6.38 Total: 2.32 kcal Atomic # 6 Polarization: 3.46 SS G_CDS: -3.77 Total: -0.31 kcal Atomic # 7 Polarization: -46.37 SS G_CDS: 0.03 Total: -46.34 kcal Atomic # 8 Polarization: -21.81 SS G_CDS: 0.18 Total: -21.63 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -34.09 -9.41 -43.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000278129816.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.246 kcal (2) G-P(sol) polarization free energy of solvation -34.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds