Wall clock time and date at job start Tue Mar 31 2020 11:44:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47253 * 2 1 4 4 N 1.46506 * 109.47068 * 179.97438 * 3 2 1 5 5 C 1.37100 * 119.99591 * 264.76356 * 4 3 2 6 6 H 1.07994 * 119.99676 * 138.85875 * 5 4 3 7 7 C 1.38951 * 120.00229 * 318.85629 * 5 4 3 8 8 N 1.31413 * 119.99887 * 341.83108 * 7 5 4 9 9 Si 1.86790 * 120.00047 * 161.83017 * 7 5 4 10 10 H 1.48500 * 109.47217 * 60.00259 * 9 7 5 11 11 H 1.48497 * 109.47274 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.47297 * 300.00195 * 9 7 5 13 13 C 1.34775 * 120.00245 * 84.76457 * 4 3 2 14 14 O 1.21284 * 119.99987 * 179.97438 * 13 4 3 15 15 C 1.50699 * 119.99675 * 0.02562 * 13 4 3 16 16 N 1.46508 * 109.46922 * 180.02562 * 15 13 4 17 17 C 1.46041 * 119.41126 * 89.99704 * 16 15 13 18 18 C 1.52691 * 111.04460 * 142.27992 * 17 16 15 19 19 C 1.50554 * 109.92319 * 51.16403 * 18 17 16 20 20 C 1.37763 * 120.95200 * 145.99610 * 19 18 17 21 21 C 1.38443 * 119.93393 * 179.97438 * 20 19 18 22 22 C 1.38383 * 120.43998 * 0.02562 * 21 20 19 23 23 C 1.38089 * 120.18167 * 359.97438 * 22 21 20 24 24 C 1.39230 * 119.56829 * 0.02562 * 23 22 21 25 25 C 1.34821 * 119.41044 * 270.01871 * 16 15 13 26 26 O 1.21552 * 120.44952 * 2.71297 * 25 16 15 27 27 H 1.08997 * 109.47566 * 300.00920 * 1 2 3 28 28 H 1.09006 * 109.46754 * 60.00593 * 1 2 3 29 29 H 1.09002 * 109.47552 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47566 * 239.99080 * 2 1 3 31 31 H 1.09008 * 109.46308 * 119.99684 * 2 1 3 32 32 H 1.08997 * 109.47586 * 59.99092 * 3 2 1 33 33 H 1.09006 * 109.46756 * 299.99405 * 3 2 1 34 34 H 0.96999 * 120.00011 * 179.97438 * 8 7 5 35 35 H 1.09000 * 109.47801 * 60.00222 * 15 13 4 36 36 H 1.09002 * 109.47365 * 299.99402 * 15 13 4 37 37 H 1.08999 * 109.16003 * 21.87724 * 17 16 15 38 38 H 1.08998 * 109.16087 * 262.68319 * 17 16 15 39 39 H 1.08996 * 109.39933 * 291.02183 * 18 17 16 40 40 H 1.09004 * 109.31848 * 171.25490 * 18 17 16 41 41 H 1.07998 * 120.03525 * 359.97438 * 20 19 18 42 42 H 1.07999 * 119.77949 * 179.97438 * 21 20 19 43 43 H 1.08001 * 119.90667 * 179.72737 * 22 21 20 44 44 H 1.07998 * 120.21153 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5051 1.4424 0.0006 5 6 4.1900 1.5509 1.1833 6 1 5.0699 0.9487 1.3549 7 6 3.7522 2.4358 2.1611 8 7 2.9269 3.4084 1.8451 9 14 4.3366 2.2427 3.9247 10 1 5.8163 2.3599 3.9715 11 1 3.7297 3.3050 4.7664 12 1 3.9292 0.9103 4.4382 13 6 4.1795 1.3357 -1.1614 14 8 5.3924 1.3361 -1.1608 15 6 3.4265 1.2170 -2.4614 16 7 4.3791 1.1145 -3.5698 17 6 4.8443 -0.2026 -3.9961 18 6 4.9955 -0.2658 -5.5142 19 6 5.8220 0.8965 -5.9963 20 6 6.6680 0.7649 -7.0756 21 6 7.4180 1.8479 -7.5015 22 6 7.3249 3.0650 -6.8496 23 6 6.4806 3.2096 -5.7665 24 6 5.7245 2.1231 -5.3348 25 6 4.8108 2.2377 -4.1778 26 8 4.4535 3.3295 -3.7805 27 1 -0.3634 0.5139 0.8898 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8934 -0.5139 -0.8898 31 1 1.8932 -0.5138 0.8901 32 1 1.6766 1.9564 0.8898 33 1 1.6767 1.9562 -0.8901 34 1 2.6210 4.0259 2.5277 35 1 2.8003 2.0983 -2.6004 36 1 2.7996 0.3257 -2.4381 37 1 4.1253 -0.9568 -3.6763 38 1 5.8085 -0.4090 -3.5316 39 1 4.0099 -0.2263 -5.9780 40 1 5.4877 -1.1988 -5.7890 41 1 6.7460 -0.1820 -7.5890 42 1 8.0807 1.7419 -8.3476 43 1 7.9173 3.9029 -7.1864 44 1 6.4080 4.1592 -5.2571 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000279077404.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:44:14 Heat of formation + Delta-G solvation = -38.777220 kcal Electronic energy + Delta-G solvation = -26813.925062 eV Core-core repulsion = 23117.209403 eV Total energy + Delta-G solvation = -3696.715659 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.60951 -38.75101 -37.76676 -36.04893 -35.11309 -32.95994 -32.47811 -31.23777 -31.09418 -29.17298 -27.67082 -25.72474 -24.38111 -24.05026 -22.98900 -21.59182 -20.99822 -19.51985 -18.33093 -17.47621 -16.90141 -16.38858 -16.27051 -15.53327 -15.20675 -14.86725 -14.71838 -14.22741 -14.16448 -13.82680 -13.72841 -13.62418 -13.46089 -13.16654 -12.82717 -12.59058 -12.43240 -12.17180 -11.82552 -11.64137 -11.59994 -11.38721 -11.24910 -11.06889 -11.01790 -10.95118 -10.62384 -10.33109 -10.24698 -9.94321 -9.56561 -9.00566 -8.96508 -8.86268 -8.77125 -7.95824 -7.36174 -6.25276 -3.94675 0.89661 1.28370 3.00185 3.19040 3.23266 3.28572 3.32248 3.91403 3.95637 4.22005 4.49275 4.60942 4.66260 4.88496 4.94733 4.97254 5.07983 5.18144 5.28403 5.31460 5.43928 5.50505 5.57044 5.60974 5.71323 5.75238 5.80134 5.91421 5.97397 6.01755 6.07963 6.22384 6.29357 6.34334 6.35364 6.39469 6.44896 6.57868 6.65499 6.85060 6.91199 7.25978 7.63665 7.66363 8.33595 8.47482 8.59659 9.25520 9.44468 10.06691 10.79625 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.018032 B = 0.003686 C = 0.003347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1552.451543 B = 7593.695044 C = 8363.974327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.140 4.140 3 C 0.107 3.893 4 N -0.441 5.441 5 C -0.310 4.310 6 H 0.086 0.914 7 C 0.039 3.961 8 N -0.869 5.869 9 Si 0.917 3.083 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.274 1.274 13 C 0.450 3.550 14 O -0.570 6.570 15 C 0.099 3.901 16 N -0.586 5.586 17 C 0.118 3.882 18 C -0.098 4.098 19 C -0.053 4.053 20 C -0.128 4.128 21 C -0.099 4.099 22 C -0.133 4.133 23 C -0.057 4.057 24 C -0.121 4.121 25 C 0.563 3.437 26 O -0.526 6.526 27 H 0.054 0.946 28 H 0.050 0.950 29 H 0.047 0.953 30 H 0.047 0.953 31 H 0.065 0.935 32 H 0.105 0.895 33 H 0.047 0.953 34 H 0.268 0.732 35 H 0.102 0.898 36 H 0.092 0.908 37 H 0.086 0.914 38 H 0.071 0.929 39 H 0.086 0.914 40 H 0.095 0.905 41 H 0.127 0.873 42 H 0.124 0.876 43 H 0.127 0.873 44 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.137 -8.221 -16.127 18.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.179 4.179 3 C -0.018 4.018 4 N -0.161 5.161 5 C -0.438 4.438 6 H 0.104 0.896 7 C -0.165 4.165 8 N -0.507 5.507 9 Si 0.744 3.256 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.199 1.199 13 C 0.237 3.763 14 O -0.453 6.453 15 C -0.027 4.027 16 N -0.318 5.318 17 C -0.005 4.005 18 C -0.136 4.136 19 C -0.053 4.053 20 C -0.146 4.146 21 C -0.117 4.117 22 C -0.151 4.151 23 C -0.076 4.076 24 C -0.124 4.124 25 C 0.352 3.648 26 O -0.403 6.403 27 H 0.073 0.927 28 H 0.069 0.931 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.084 0.916 32 H 0.123 0.877 33 H 0.066 0.934 34 H 0.078 0.922 35 H 0.120 0.880 36 H 0.110 0.890 37 H 0.104 0.896 38 H 0.089 0.911 39 H 0.105 0.895 40 H 0.113 0.887 41 H 0.145 0.855 42 H 0.142 0.858 43 H 0.145 0.855 44 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 0.171 -7.483 -15.784 17.469 hybrid contribution 0.202 -0.008 0.940 0.961 sum 0.373 -7.491 -14.844 16.631 Atomic orbital electron populations 1.21687 0.96275 1.00679 1.01691 1.21999 0.94947 0.99340 1.01602 1.21560 0.82369 0.94138 1.03683 1.43412 1.04317 1.63655 1.04702 1.19292 1.12087 1.21568 0.90846 0.89626 1.25419 0.97103 0.93502 1.00490 1.69933 1.33437 1.13315 1.33979 0.86153 0.79294 0.77840 0.82304 1.19809 1.20986 1.19911 1.20711 0.88520 0.82089 0.85017 1.90514 1.13985 1.54208 1.86546 1.21534 0.91229 1.03850 0.86120 1.47124 1.45610 1.05938 1.33132 1.21313 1.01446 0.84471 0.93307 1.20858 1.00206 0.96747 0.95744 1.20027 0.96289 0.93926 0.95084 1.20879 0.97374 0.99244 0.97061 1.21295 0.98309 0.92918 0.99204 1.21150 0.99594 0.97966 0.96417 1.21226 0.93183 0.98252 0.94937 1.19868 1.00458 0.94581 0.97528 1.18115 0.80417 0.83862 0.82456 1.90790 1.57493 1.26355 1.65665 0.92660 0.93121 0.93438 0.93386 0.91575 0.87661 0.93441 0.92246 0.88004 0.89038 0.89613 0.91073 0.89546 0.88679 0.85508 0.85769 0.85463 0.84692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 9.91 37.16 0.37 -1.66 16 2 C -0.14 -2.42 6.17 -26.73 -0.16 -2.59 16 3 C 0.11 2.31 4.69 -4.04 -0.02 2.29 16 4 N -0.44 -11.37 2.50 -114.81 -0.29 -11.65 16 5 C -0.31 -8.78 8.84 -14.93 -0.13 -8.91 16 6 H 0.09 2.52 7.82 -52.49 -0.41 2.11 16 7 C 0.04 1.07 4.95 -17.47 -0.09 0.99 16 8 N -0.87 -24.26 11.61 55.50 0.64 -23.62 16 9 Si 0.92 21.10 29.59 -169.99 -5.03 16.07 16 10 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 11 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 12 H -0.27 -6.08 7.11 56.52 0.40 -5.67 16 13 C 0.45 11.40 7.66 -10.99 -0.08 11.31 16 14 O -0.57 -16.62 16.34 5.55 0.09 -16.53 16 15 C 0.10 1.94 4.46 -5.19 -0.02 1.91 16 16 N -0.59 -10.71 2.29 -176.70 -0.40 -11.12 16 17 C 0.12 1.60 6.44 -4.45 -0.03 1.57 16 18 C -0.10 -1.01 6.04 -28.11 -0.17 -1.18 16 19 C -0.05 -0.66 5.68 -104.32 -0.59 -1.26 16 20 C -0.13 -1.30 9.73 -39.68 -0.39 -1.68 16 21 C -0.10 -0.97 10.04 -39.45 -0.40 -1.37 16 22 C -0.13 -1.51 10.04 -39.58 -0.40 -1.90 16 23 C -0.06 -0.84 9.64 -39.27 -0.38 -1.22 16 24 C -0.12 -1.97 5.78 -105.03 -0.61 -2.57 16 25 C 0.56 11.28 7.48 -12.29 -0.09 11.19 16 26 O -0.53 -12.61 16.22 5.32 0.09 -12.52 16 27 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 28 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.05 0.76 6.60 -51.93 -0.34 0.42 16 31 H 0.07 1.23 8.14 -51.92 -0.42 0.80 16 32 H 0.11 2.54 5.76 -51.93 -0.30 2.24 16 33 H 0.05 0.96 6.66 -51.93 -0.35 0.62 16 34 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 35 H 0.10 2.09 6.71 -51.93 -0.35 1.74 16 36 H 0.09 1.45 6.19 -51.93 -0.32 1.12 16 37 H 0.09 0.95 7.74 -51.93 -0.40 0.55 16 38 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 39 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.09 0.69 8.08 -51.93 -0.42 0.27 16 41 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 42 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 43 H 0.13 1.11 8.06 -52.49 -0.42 0.68 16 44 H 0.14 2.06 7.85 -52.49 -0.41 1.65 16 LS Contribution 362.14 15.07 5.46 5.46 Total: -1.00 -36.18 362.14 -8.87 -45.05 By element: Atomic # 1 Polarization: 10.17 SS G_CDS: -6.24 Total: 3.93 kcal Atomic # 6 Polarization: 8.12 SS G_CDS: -3.19 Total: 4.93 kcal Atomic # 7 Polarization: -46.35 SS G_CDS: -0.05 Total: -46.39 kcal Atomic # 8 Polarization: -29.22 SS G_CDS: 0.18 Total: -29.05 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.03 Total: 16.07 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -36.18 -8.87 -45.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279077404.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.273 kcal (2) G-P(sol) polarization free energy of solvation -36.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds