Wall clock time and date at job start Tue Mar 31 2020 10:52:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47158 * 2 1 4 4 H 1.09004 * 109.46919 * 306.11569 * 3 2 1 5 5 C 1.50705 * 109.47022 * 186.11547 * 3 2 1 6 6 C 1.38223 * 120.00289 * 292.03819 * 5 3 2 7 7 C 1.38235 * 120.00307 * 179.78741 * 6 5 3 8 8 C 1.38238 * 119.99594 * 0.43970 * 7 6 5 9 9 C 1.38231 * 120.00298 * 359.81470 * 8 7 6 10 10 C 1.38235 * 119.99565 * 359.97438 * 9 8 7 11 11 N 1.46496 * 109.47085 * 66.11908 * 3 2 1 12 12 C 1.47313 * 126.69211 * 64.53339 * 11 3 2 13 13 C 1.51588 * 103.59249 * 179.97438 * 12 11 3 14 14 O 1.21230 * 127.15386 * 180.02562 * 13 12 11 15 15 N 1.34769 * 105.68531 * 359.74506 * 13 12 11 16 16 C 1.46496 * 124.17714 * 180.27514 * 15 13 12 17 17 C 1.52999 * 109.47076 * 270.17305 * 16 15 13 18 18 C 1.50699 * 109.47207 * 179.97438 * 17 16 15 19 19 H 1.07995 * 119.99996 * 0.02562 * 18 17 16 20 20 C 1.37879 * 119.99904 * 180.02562 * 18 17 16 21 21 N 1.31516 * 120.00062 * 0.02562 * 20 18 17 22 22 Si 1.86805 * 119.99822 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47005 * 60.00000 * 22 20 18 24 24 H 1.48502 * 109.47109 * 179.97438 * 22 20 18 25 25 H 1.48490 * 109.47141 * 300.00154 * 22 20 18 26 26 C 1.33792 * 111.64158 * 0.43210 * 15 13 12 27 27 O 1.21544 * 123.76950 * 179.80314 * 26 15 13 28 28 H 1.09002 * 109.47034 * 293.59898 * 1 2 3 29 29 H 1.09005 * 109.47299 * 53.59727 * 1 2 3 30 30 H 1.09002 * 109.47341 * 173.59980 * 1 2 3 31 31 H 1.08998 * 109.47442 * 240.00080 * 2 1 3 32 32 H 1.09002 * 109.47384 * 119.99778 * 2 1 3 33 33 H 1.08005 * 119.99966 * 359.97438 * 6 5 3 34 34 H 1.07999 * 120.00544 * 180.27039 * 7 6 5 35 35 H 1.07998 * 119.99923 * 179.82972 * 8 7 6 36 36 H 1.07995 * 120.00380 * 179.97438 * 9 8 7 37 37 H 1.08007 * 119.99797 * 180.02562 * 10 9 8 38 38 H 1.08995 * 110.59741 * 298.50530 * 12 11 3 39 39 H 1.08995 * 110.59919 * 61.30037 * 12 11 3 40 40 H 1.09001 * 109.47410 * 30.17818 * 16 15 13 41 41 H 1.08999 * 109.46925 * 150.17730 * 16 15 13 42 42 H 1.09001 * 109.47419 * 300.00506 * 17 16 15 43 43 H 1.09008 * 109.47142 * 60.00312 * 17 16 15 44 44 H 0.97003 * 119.99510 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5900 1.9870 -0.8302 5 6 3.5394 1.4452 -0.1514 6 6 4.3377 0.9581 0.8665 7 6 5.7129 0.9565 0.7259 8 6 6.2901 1.4504 -0.4291 9 6 5.4920 1.9423 -1.4449 10 6 4.1166 1.9399 -1.3059 11 7 1.6756 2.0893 1.2629 12 6 2.1518 1.7242 2.6083 13 6 1.4555 2.7197 3.5150 14 8 1.5481 2.8010 4.7210 15 7 0.7169 3.4994 2.7009 16 6 -0.1213 4.6090 3.1617 17 6 -1.5270 4.0912 3.4727 18 6 -2.3891 5.2325 3.9473 19 1 -1.9759 6.2276 4.0195 20 6 -3.7055 5.0061 4.2894 21 7 -4.2086 3.7941 4.2020 22 14 -4.7744 6.4209 4.8771 23 1 -4.8525 7.4563 3.8155 24 1 -6.1387 5.9184 5.1790 25 1 -4.1817 7.0129 6.1031 26 6 0.8413 3.1328 1.4202 27 8 0.2684 3.6843 0.5009 28 1 -0.3633 0.4114 0.9417 29 1 -0.3634 0.6099 -0.8272 30 1 -0.3634 -1.0213 -0.1146 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 3.8869 0.5760 1.7705 34 1 6.3365 0.5719 1.5193 35 1 7.3646 1.4517 -0.5379 36 1 5.9429 2.3286 -2.3470 37 1 3.4930 2.3239 -2.0998 38 1 1.8543 0.7056 2.8570 39 1 3.2342 1.8335 2.6747 40 1 0.3134 5.0433 4.0620 41 1 -0.1783 5.3692 2.3826 42 1 -1.9617 3.6569 2.5724 43 1 -1.4701 3.3309 4.2518 44 1 -5.1348 3.6350 4.4423 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000279935095.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:52:55 Heat of formation + Delta-G solvation = -19.247481 kcal Electronic energy + Delta-G solvation = -26669.405608 eV Core-core repulsion = 22973.536823 eV Total energy + Delta-G solvation = -3695.868786 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.08455 -39.71594 -38.22886 -36.59704 -35.49522 -34.03336 -32.60911 -31.33996 -31.21404 -29.83381 -28.09239 -26.13811 -25.01768 -23.13094 -22.54137 -22.27698 -21.76781 -20.46818 -19.61599 -17.57685 -17.04125 -16.80483 -16.44160 -16.23920 -15.55498 -15.27694 -14.84401 -14.74280 -14.55833 -14.26127 -14.07071 -13.86721 -13.77771 -13.50716 -13.19896 -12.92333 -12.79462 -12.48539 -12.31483 -12.10607 -11.54049 -11.49946 -11.34199 -11.22793 -11.03981 -10.93382 -10.86599 -10.51477 -10.12325 -10.07000 -9.76201 -9.25473 -9.20357 -9.08318 -9.00521 -8.77086 -8.37479 -6.02602 -4.06337 0.98490 1.11075 1.95975 2.37692 3.19736 3.34865 3.38436 3.39600 3.41761 3.55343 4.16245 4.31426 4.45841 4.52312 4.69107 4.78714 4.81642 4.86958 5.00154 5.06832 5.15779 5.18557 5.28036 5.33953 5.39608 5.57051 5.66948 5.70865 5.78234 5.85036 5.94874 6.07187 6.13819 6.18304 6.21933 6.24648 6.29487 6.33608 6.62766 6.68117 6.69880 7.43400 7.58896 7.73135 7.74246 7.94256 8.29023 8.45123 8.98510 9.57526 11.09051 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.022252 B = 0.003166 C = 0.003067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.009924 B = 8841.014505 C = 9128.059273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.129 4.129 3 C 0.220 3.780 4 H 0.111 0.889 5 C -0.096 4.096 6 C -0.116 4.116 7 C -0.119 4.119 8 C -0.119 4.119 9 C -0.119 4.119 10 C -0.103 4.103 11 N -0.622 5.622 12 C 0.052 3.948 13 C 0.520 3.480 14 O -0.472 6.472 15 N -0.568 5.568 16 C 0.120 3.880 17 C 0.014 3.986 18 C -0.523 4.523 19 H 0.059 0.941 20 C 0.060 3.940 21 N -0.892 5.892 22 Si 0.898 3.102 23 H -0.275 1.275 24 H -0.287 1.287 25 H -0.276 1.276 26 C 0.703 3.297 27 O -0.537 6.537 28 H 0.057 0.943 29 H 0.059 0.941 30 H 0.057 0.943 31 H 0.079 0.921 32 H 0.068 0.932 33 H 0.127 0.873 34 H 0.123 0.877 35 H 0.121 0.879 36 H 0.123 0.877 37 H 0.125 0.875 38 H 0.117 0.883 39 H 0.120 0.880 40 H 0.082 0.918 41 H 0.084 0.916 42 H 0.024 0.976 43 H 0.021 0.979 44 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.647 -10.033 -10.748 25.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.167 4.167 3 C 0.118 3.882 4 H 0.129 0.871 5 C -0.097 4.097 6 C -0.134 4.134 7 C -0.137 4.137 8 C -0.137 4.137 9 C -0.137 4.137 10 C -0.122 4.122 11 N -0.362 5.362 12 C -0.074 4.074 13 C 0.307 3.693 14 O -0.343 6.343 15 N -0.312 5.312 16 C 0.001 3.999 17 C -0.024 4.024 18 C -0.561 4.561 19 H 0.077 0.923 20 C -0.142 4.142 21 N -0.531 5.531 22 Si 0.725 3.275 23 H -0.201 1.201 24 H -0.212 1.212 25 H -0.201 1.201 26 C 0.405 3.595 27 O -0.410 6.410 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.097 0.903 32 H 0.087 0.913 33 H 0.145 0.855 34 H 0.141 0.859 35 H 0.139 0.861 36 H 0.141 0.859 37 H 0.143 0.857 38 H 0.134 0.866 39 H 0.137 0.863 40 H 0.101 0.899 41 H 0.102 0.898 42 H 0.042 0.958 43 H 0.039 0.961 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 20.168 -9.751 -10.643 24.801 hybrid contribution -0.612 0.649 0.400 0.978 sum 19.556 -9.102 -10.243 23.879 Atomic orbital electron populations 1.21749 0.94420 1.01786 1.03009 1.21930 0.97173 0.94690 1.02956 1.19826 0.90005 0.93984 0.84362 0.87084 1.20103 0.95082 0.99459 0.95055 1.21254 0.93803 0.99626 0.98720 1.21167 0.94813 0.99825 0.97908 1.21193 0.99867 0.98711 0.93961 1.21154 0.93621 0.99763 0.99133 1.21082 0.95112 0.98641 0.97367 1.47602 1.48248 1.34149 1.06182 1.22684 1.01789 1.00771 0.82147 1.20722 0.78904 0.81997 0.87716 1.90795 1.62067 1.69875 1.11537 1.46746 1.43852 1.32986 1.07566 1.22195 0.92507 0.85582 0.99628 1.19390 0.88197 0.97341 0.97453 1.20965 0.95713 0.94488 1.44963 0.92306 1.24991 0.97958 0.95778 0.95451 1.69964 1.14732 1.20237 1.48131 0.86567 0.79352 0.82284 0.79285 1.20093 1.21237 1.20108 1.15884 0.79834 0.80494 0.83265 1.90959 1.50306 1.57865 1.41898 0.92348 0.92180 0.92403 0.90262 0.91303 0.85481 0.85884 0.86115 0.85919 0.85668 0.86551 0.86301 0.89942 0.89784 0.95808 0.96108 0.92814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 9.74 37.16 0.36 -1.33 16 2 C -0.13 -1.16 5.32 -26.73 -0.14 -1.30 16 3 C 0.22 2.35 2.64 -69.08 -0.18 2.17 16 4 H 0.11 1.30 7.43 -51.93 -0.39 0.92 16 5 C -0.10 -0.90 4.95 -104.63 -0.52 -1.42 16 6 C -0.12 -0.98 7.95 -39.59 -0.31 -1.29 16 7 C -0.12 -0.91 10.05 -39.58 -0.40 -1.31 16 8 C -0.12 -0.89 10.05 -39.58 -0.40 -1.29 16 9 C -0.12 -0.93 10.05 -39.59 -0.40 -1.33 16 10 C -0.10 -0.92 9.67 -39.58 -0.38 -1.30 16 11 N -0.62 -8.25 2.42 -173.71 -0.42 -8.67 16 12 C 0.05 0.61 5.64 -4.31 -0.02 0.58 16 13 C 0.52 8.81 8.32 -10.55 -0.09 8.72 16 14 O -0.47 -9.31 17.76 5.60 0.10 -9.21 16 15 N -0.57 -10.84 2.60 -120.73 -0.31 -11.15 16 16 C 0.12 2.63 5.64 -4.04 -0.02 2.61 16 17 C 0.01 0.37 5.30 -27.88 -0.15 0.23 16 18 C -0.52 -15.03 9.11 -34.44 -0.31 -15.35 16 19 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 20 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 21 N -0.89 -27.26 13.29 55.43 0.74 -26.52 16 22 Si 0.90 21.96 29.54 -169.99 -5.02 16.94 16 23 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 24 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 25 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 26 C 0.70 12.70 8.31 -88.02 -0.73 11.97 16 27 O -0.54 -11.45 16.92 5.33 0.09 -11.36 16 28 H 0.06 0.80 7.96 -51.93 -0.41 0.38 16 29 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.07 0.55 7.62 -51.93 -0.40 0.16 16 33 H 0.13 0.91 5.37 -52.48 -0.28 0.63 16 34 H 0.12 0.70 8.06 -52.49 -0.42 0.28 16 35 H 0.12 0.66 8.06 -52.49 -0.42 0.24 16 36 H 0.12 0.72 8.06 -52.49 -0.42 0.30 16 37 H 0.13 0.97 7.96 -52.48 -0.42 0.56 16 38 H 0.12 1.09 7.84 -51.93 -0.41 0.68 16 39 H 0.12 1.10 5.73 -51.93 -0.30 0.80 16 40 H 0.08 1.75 8.01 -51.93 -0.42 1.34 16 41 H 0.08 1.83 7.86 -51.93 -0.41 1.42 16 42 H 0.02 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.02 0.60 8.14 -51.92 -0.42 0.17 16 44 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 368.74 15.07 5.56 5.56 Total: -1.00 -34.75 368.74 -9.42 -44.16 By element: Atomic # 1 Polarization: 4.57 SS G_CDS: -6.35 Total: -1.78 kcal Atomic # 6 Polarization: 5.82 SS G_CDS: -3.80 Total: 2.03 kcal Atomic # 7 Polarization: -46.34 SS G_CDS: 0.00 Total: -46.34 kcal Atomic # 8 Polarization: -20.75 SS G_CDS: 0.19 Total: -20.57 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -34.75 -9.42 -44.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279935095.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.916 kcal (2) G-P(sol) polarization free energy of solvation -34.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds