Wall clock time and date at job start Tue Mar 31 2020 10:52:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47158 * 2 1 4 4 H 1.09004 * 109.46919 * 306.11569 * 3 2 1 5 5 C 1.50705 * 109.47022 * 186.11547 * 3 2 1 6 6 C 1.38223 * 120.00289 * 292.03819 * 5 3 2 7 7 C 1.38235 * 120.00307 * 179.78741 * 6 5 3 8 8 C 1.38238 * 119.99594 * 0.43970 * 7 6 5 9 9 C 1.38231 * 120.00298 * 359.81470 * 8 7 6 10 10 C 1.38235 * 119.99565 * 359.97438 * 9 8 7 11 11 N 1.46496 * 109.47085 * 66.11908 * 3 2 1 12 12 C 1.47313 * 126.69211 * 64.53339 * 11 3 2 13 13 C 1.51588 * 103.59249 * 179.97438 * 12 11 3 14 14 O 1.21230 * 127.15386 * 180.02562 * 13 12 11 15 15 N 1.34769 * 105.68531 * 359.74506 * 13 12 11 16 16 C 1.46496 * 124.17714 * 180.27514 * 15 13 12 17 17 C 1.52999 * 109.47076 * 270.17305 * 16 15 13 18 18 C 1.50699 * 109.47207 * 179.97438 * 17 16 15 19 19 H 1.07995 * 119.99996 * 0.02562 * 18 17 16 20 20 C 1.37879 * 119.99904 * 180.02562 * 18 17 16 21 21 N 1.31516 * 120.00062 * 0.02562 * 20 18 17 22 22 Si 1.86805 * 119.99822 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47005 * 60.00000 * 22 20 18 24 24 H 1.48502 * 109.47109 * 179.97438 * 22 20 18 25 25 H 1.48490 * 109.47141 * 300.00154 * 22 20 18 26 26 C 1.33792 * 111.64158 * 0.43210 * 15 13 12 27 27 O 1.21544 * 123.76950 * 179.80314 * 26 15 13 28 28 H 1.09002 * 109.47034 * 293.59898 * 1 2 3 29 29 H 1.09005 * 109.47299 * 53.59727 * 1 2 3 30 30 H 1.09002 * 109.47341 * 173.59980 * 1 2 3 31 31 H 1.08998 * 109.47442 * 240.00080 * 2 1 3 32 32 H 1.09002 * 109.47384 * 119.99778 * 2 1 3 33 33 H 1.08005 * 119.99966 * 359.97438 * 6 5 3 34 34 H 1.07999 * 120.00544 * 180.27039 * 7 6 5 35 35 H 1.07998 * 119.99923 * 179.82972 * 8 7 6 36 36 H 1.07995 * 120.00380 * 179.97438 * 9 8 7 37 37 H 1.08007 * 119.99797 * 180.02562 * 10 9 8 38 38 H 1.08995 * 110.59741 * 298.50530 * 12 11 3 39 39 H 1.08995 * 110.59919 * 61.30037 * 12 11 3 40 40 H 1.09001 * 109.47410 * 30.17818 * 16 15 13 41 41 H 1.08999 * 109.46925 * 150.17730 * 16 15 13 42 42 H 1.09001 * 109.47419 * 300.00506 * 17 16 15 43 43 H 1.09008 * 109.47142 * 60.00312 * 17 16 15 44 44 H 0.97003 * 119.99510 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5900 1.9870 -0.8302 5 6 3.5394 1.4452 -0.1514 6 6 4.3377 0.9581 0.8665 7 6 5.7129 0.9565 0.7259 8 6 6.2901 1.4504 -0.4291 9 6 5.4920 1.9423 -1.4449 10 6 4.1166 1.9399 -1.3059 11 7 1.6756 2.0893 1.2629 12 6 2.1518 1.7242 2.6083 13 6 1.4555 2.7197 3.5150 14 8 1.5481 2.8010 4.7210 15 7 0.7169 3.4994 2.7009 16 6 -0.1213 4.6090 3.1617 17 6 -1.5270 4.0912 3.4727 18 6 -2.3891 5.2325 3.9473 19 1 -1.9759 6.2276 4.0195 20 6 -3.7055 5.0061 4.2894 21 7 -4.2086 3.7941 4.2020 22 14 -4.7744 6.4209 4.8771 23 1 -4.8525 7.4563 3.8155 24 1 -6.1387 5.9184 5.1790 25 1 -4.1817 7.0129 6.1031 26 6 0.8413 3.1328 1.4202 27 8 0.2684 3.6843 0.5009 28 1 -0.3633 0.4114 0.9417 29 1 -0.3634 0.6099 -0.8272 30 1 -0.3634 -1.0213 -0.1146 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 3.8869 0.5760 1.7705 34 1 6.3365 0.5719 1.5193 35 1 7.3646 1.4517 -0.5379 36 1 5.9429 2.3286 -2.3470 37 1 3.4930 2.3239 -2.0998 38 1 1.8543 0.7056 2.8570 39 1 3.2342 1.8335 2.6747 40 1 0.3134 5.0433 4.0620 41 1 -0.1783 5.3692 2.3826 42 1 -1.9617 3.6569 2.5724 43 1 -1.4701 3.3309 4.2518 44 1 -5.1348 3.6350 4.4423 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000279935095.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:52:54 Heat of formation + Delta-G solvation = -39.288835 kcal Electronic energy + Delta-G solvation = -26670.274667 eV Core-core repulsion = 22973.536823 eV Total energy + Delta-G solvation = -3696.737844 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.42452 -40.46506 -39.61659 -37.68574 -37.02756 -35.70509 -34.30034 -32.11766 -31.88663 -31.49705 -29.25974 -27.37665 -26.70372 -24.08764 -23.85722 -23.28632 -22.99363 -21.56416 -20.93904 -18.97484 -18.35639 -18.12440 -17.86343 -17.48781 -16.61491 -16.53489 -16.35823 -16.01021 -15.60088 -15.36962 -15.19009 -15.10069 -14.93000 -14.67267 -14.43711 -14.24393 -14.02208 -13.68991 -13.45787 -13.32682 -12.87495 -12.80658 -12.77035 -12.37067 -12.15488 -12.11658 -12.06206 -12.00209 -11.90528 -11.77886 -11.44288 -11.19333 -10.68352 -10.62911 -10.00346 -9.77555 -9.68337 -8.26910 -6.40334 0.32673 0.51859 0.61520 1.12245 1.38922 1.43301 1.50949 1.94757 2.02322 2.38598 2.92467 3.01007 3.07058 3.38530 3.75575 3.94823 3.99689 4.12554 4.17249 4.19673 4.24135 4.31566 4.39215 4.39899 4.43740 4.48044 4.64323 4.68601 4.72269 4.80133 4.92631 5.01582 5.05228 5.11267 5.17688 5.32533 5.34777 5.39379 5.43377 5.59179 5.66219 5.69407 5.71214 6.05759 6.12010 6.14982 6.36366 6.73031 7.01992 7.29428 8.85751 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.022252 B = 0.003166 C = 0.003067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.009924 B = 8841.014505 C = 9128.059273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.120 4.120 3 C 0.218 3.782 4 H 0.093 0.907 5 C -0.107 4.107 6 C -0.122 4.122 7 C -0.122 4.122 8 C -0.122 4.122 9 C -0.125 4.125 10 C -0.118 4.118 11 N -0.605 5.605 12 C 0.066 3.934 13 C 0.513 3.487 14 O -0.504 6.504 15 N -0.581 5.581 16 C 0.135 3.865 17 C 0.028 3.972 18 C -0.548 4.548 19 H 0.070 0.930 20 C 0.001 3.999 21 N -0.932 5.932 22 Si 0.974 3.026 23 H -0.265 1.265 24 H -0.281 1.281 25 H -0.263 1.263 26 C 0.696 3.304 27 O -0.581 6.581 28 H 0.026 0.974 29 H 0.044 0.956 30 H 0.074 0.926 31 H 0.102 0.898 32 H 0.088 0.912 33 H 0.142 0.858 34 H 0.145 0.855 35 H 0.142 0.858 36 H 0.139 0.861 37 H 0.125 0.875 38 H 0.153 0.847 39 H 0.158 0.842 40 H 0.090 0.910 41 H 0.082 0.918 42 H -0.013 1.013 43 H -0.010 1.010 44 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.937 -10.719 -10.675 27.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.158 4.158 3 C 0.118 3.882 4 H 0.111 0.889 5 C -0.108 4.108 6 C -0.140 4.140 7 C -0.140 4.140 8 C -0.140 4.140 9 C -0.143 4.143 10 C -0.137 4.137 11 N -0.344 5.344 12 C -0.058 4.058 13 C 0.303 3.697 14 O -0.376 6.376 15 N -0.324 5.324 16 C 0.014 3.986 17 C -0.010 4.010 18 C -0.586 4.586 19 H 0.088 0.912 20 C -0.197 4.197 21 N -0.571 5.571 22 Si 0.798 3.202 23 H -0.190 1.190 24 H -0.206 1.206 25 H -0.187 1.187 26 C 0.398 3.602 27 O -0.457 6.457 28 H 0.045 0.955 29 H 0.063 0.937 30 H 0.093 0.907 31 H 0.120 0.880 32 H 0.107 0.893 33 H 0.159 0.841 34 H 0.163 0.837 35 H 0.160 0.840 36 H 0.156 0.844 37 H 0.143 0.857 38 H 0.171 0.829 39 H 0.175 0.825 40 H 0.108 0.892 41 H 0.101 0.899 42 H 0.006 0.994 43 H 0.009 0.991 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 22.517 -10.484 -10.587 27.000 hybrid contribution -1.255 0.792 0.318 1.518 sum 21.262 -9.692 -10.269 25.524 Atomic orbital electron populations 1.21740 0.96373 1.02218 1.00599 1.21915 0.95171 0.93659 1.05021 1.20021 0.91390 0.94439 0.82397 0.88857 1.19953 0.93797 1.01034 0.96032 1.21425 0.94250 0.99522 0.98811 1.21479 0.94737 0.99264 0.98524 1.21537 1.01055 0.97760 0.93648 1.21406 0.93229 0.99612 1.00077 1.21233 0.95898 0.98997 0.97539 1.47756 1.46445 1.32274 1.07879 1.22926 1.03022 1.00450 0.79405 1.21567 0.78309 0.82152 0.87714 1.90773 1.63118 1.70776 1.12982 1.46744 1.43993 1.32963 1.08738 1.21700 0.90472 0.86464 0.99945 1.19133 0.91044 0.96230 0.94555 1.21446 0.96611 0.95386 1.45197 0.91168 1.26048 0.99557 0.98813 0.95286 1.70111 1.15300 1.22723 1.48964 0.85365 0.77147 0.78521 0.79214 1.18974 1.20644 1.18737 1.16062 0.80371 0.81421 0.82326 1.90917 1.52308 1.59635 1.42884 0.95492 0.93709 0.90692 0.87951 0.89325 0.84060 0.83691 0.84042 0.84361 0.85656 0.82946 0.82534 0.89201 0.89941 0.99445 0.99124 0.92549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.35 9.74 71.98 0.70 -2.65 16 2 C -0.12 -1.91 5.32 30.59 0.16 -1.75 16 3 C 0.22 4.44 2.64 44.25 0.12 4.55 16 4 H 0.09 2.26 7.43 -2.39 -0.02 2.24 16 5 C -0.11 -1.79 4.95 -19.87 -0.10 -1.89 16 6 C -0.12 -1.63 7.95 22.27 0.18 -1.45 16 7 C -0.12 -1.41 10.05 22.27 0.22 -1.18 16 8 C -0.12 -1.42 10.05 22.27 0.22 -1.20 16 9 C -0.13 -1.67 10.05 22.27 0.22 -1.45 16 10 C -0.12 -1.92 9.67 22.27 0.22 -1.70 16 11 N -0.61 -15.62 2.42 -821.92 -1.99 -17.61 16 12 C 0.07 1.39 5.64 85.76 0.48 1.88 16 13 C 0.51 17.27 8.32 87.94 0.73 18.00 16 14 O -0.50 -19.90 17.76 -2.88 -0.05 -19.95 16 15 N -0.58 -22.86 2.60 -773.12 -2.01 -24.87 16 16 C 0.13 6.19 5.64 86.38 0.49 6.67 16 17 C 0.03 1.61 5.30 29.85 0.16 1.76 16 18 C -0.55 -32.44 9.11 25.60 0.23 -32.21 16 19 H 0.07 3.89 7.74 -2.91 -0.02 3.87 16 20 C 0.00 0.08 5.46 84.65 0.46 0.54 16 21 N -0.93 -58.63 13.29 21.45 0.28 -58.34 16 22 Si 0.97 45.38 29.54 68.60 2.03 47.41 16 23 H -0.26 -11.84 7.11 99.48 0.71 -11.13 16 24 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 25 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 26 C 0.70 25.94 8.31 179.44 1.49 27.43 16 27 O -0.58 -26.13 16.92 -3.85 -0.07 -26.19 16 28 H 0.03 0.74 7.96 -2.39 -0.02 0.73 16 29 H 0.04 1.10 8.14 -2.38 -0.02 1.08 16 30 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.10 1.24 8.14 -2.39 -0.02 1.23 16 32 H 0.09 1.10 7.62 -2.39 -0.02 1.08 16 33 H 0.14 1.37 5.37 -2.91 -0.02 1.36 16 34 H 0.15 1.01 8.06 -2.91 -0.02 0.99 16 35 H 0.14 1.01 8.06 -2.91 -0.02 0.99 16 36 H 0.14 1.32 8.06 -2.91 -0.02 1.30 16 37 H 0.13 1.91 7.96 -2.91 -0.02 1.89 16 38 H 0.15 2.28 7.84 -2.39 -0.02 2.26 16 39 H 0.16 2.28 5.73 -2.39 -0.01 2.26 16 40 H 0.09 3.94 8.01 -2.39 -0.02 3.92 16 41 H 0.08 3.77 7.86 -2.39 -0.02 3.75 16 42 H -0.01 -0.81 8.14 -2.39 -0.02 -0.83 16 43 H -0.01 -0.59 8.14 -2.38 -0.02 -0.61 16 44 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 Total: -1.00 -79.78 368.74 5.19 -74.60 By element: Atomic # 1 Polarization: 8.60 SS G_CDS: 1.00 Total: 9.60 kcal Atomic # 6 Polarization: 9.37 SS G_CDS: 5.99 Total: 15.37 kcal Atomic # 7 Polarization: -97.11 SS G_CDS: -3.71 Total: -100.82 kcal Atomic # 8 Polarization: -46.03 SS G_CDS: -0.12 Total: -46.15 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 2.03 Total: 47.41 kcal Total: -79.78 5.19 -74.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279935095.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.309 kcal (2) G-P(sol) polarization free energy of solvation -79.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds