Wall clock time and date at job start Tue Mar 31 2020 11:11:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47113 * 2 1 4 4 H 1.08994 * 109.47218 * 54.99927 * 3 2 1 5 5 C 1.52997 * 109.47303 * 175.00034 * 3 2 1 6 6 O 1.42900 * 109.47132 * 294.99894 * 3 2 1 7 7 C 1.35837 * 116.99833 * 155.11482 * 6 3 2 8 8 C 1.38853 * 119.93758 * 5.45020 * 7 6 3 9 9 C 1.37875 * 120.06787 * 179.97438 * 8 7 6 10 10 C 1.39400 * 119.93055 * 0.02562 * 9 8 7 11 11 C 1.48346 * 120.06319 * 179.97438 * 10 9 8 12 12 N 1.30803 * 126.41389 * 359.97438 * 11 10 9 13 13 O 1.21292 * 110.08469 * 180.02562 * 12 11 10 14 14 C 1.33667 * 110.03788 * 359.97438 * 13 12 11 15 15 C 1.50700 * 126.43552 * 179.97438 * 14 13 12 16 16 C 1.53004 * 109.47117 * 270.02469 * 15 14 13 17 17 C 1.50692 * 109.47179 * 179.97438 * 16 15 14 18 18 H 1.08007 * 119.99980 * 0.02562 * 17 16 15 19 19 C 1.37881 * 120.00398 * 180.02562 * 17 16 15 20 20 N 1.31519 * 119.99377 * 0.02562 * 19 17 16 21 21 Si 1.86793 * 120.00419 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47138 * 89.99949 * 21 19 17 23 23 H 1.48498 * 109.47318 * 210.00286 * 21 19 17 24 24 H 1.48507 * 109.47115 * 330.00340 * 21 19 17 25 25 N 1.30969 * 107.12922 * 0.02562 * 14 13 12 26 26 C 1.39403 * 119.87582 * 0.25162 * 10 9 8 27 27 C 1.37875 * 119.92874 * 359.46619 * 26 10 9 28 28 H 1.08994 * 109.47188 * 299.99847 * 1 2 3 29 29 H 1.09002 * 109.47167 * 59.99951 * 1 2 3 30 30 H 1.08996 * 109.47294 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47059 * 239.99799 * 2 1 3 32 32 H 1.09002 * 109.47167 * 120.00049 * 2 1 3 33 33 H 1.08999 * 109.47516 * 59.99917 * 5 3 2 34 34 H 1.08998 * 109.47308 * 179.97438 * 5 3 2 35 35 H 1.08998 * 109.47163 * 300.00191 * 5 3 2 36 36 H 1.08004 * 119.96917 * 0.02562 * 8 7 6 37 37 H 1.07999 * 120.03358 * 180.02562 * 9 8 7 38 38 H 1.08998 * 109.47057 * 30.02753 * 15 14 13 39 39 H 1.08995 * 109.47056 * 150.02302 * 15 14 13 40 40 H 1.08993 * 109.46956 * 300.00005 * 16 15 14 41 41 H 1.09000 * 109.46602 * 59.99915 * 16 15 14 42 42 H 0.96995 * 119.99607 * 180.02562 * 20 19 17 43 43 H 1.07999 * 120.03079 * 179.72703 * 26 10 9 44 44 H 1.08000 * 119.95918 * 180.27358 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5648 1.4444 0.1257 6 8 1.6620 2.0814 -1.2211 7 6 1.5546 3.4353 -1.2010 8 6 1.9172 4.1425 -0.0624 9 6 1.8097 5.5168 -0.0393 10 6 1.3359 6.1964 -1.1605 11 6 1.2185 7.6750 -1.1387 12 7 1.5219 8.4634 -0.1400 13 8 1.3111 9.6189 -0.4425 14 6 0.8423 9.6868 -1.6924 15 6 0.4587 10.9393 -2.4376 16 6 -1.0193 11.2477 -2.1898 17 6 -1.4027 12.5005 -2.9345 18 1 -0.6660 13.0241 -3.5258 19 6 -2.6940 12.9783 -2.8610 20 7 -3.5909 12.3410 -2.1406 21 14 -3.1694 14.5308 -3.7846 22 1 -3.6440 14.1716 -5.1451 23 1 -4.2541 15.2308 -3.0508 24 1 -1.9880 15.4241 -3.8924 25 7 0.7778 8.4604 -2.1474 26 6 0.9671 5.4833 -2.3002 27 6 1.0823 4.1095 -2.3194 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 3.9995 0.9053 -0.7161 34 1 3.9282 2.4720 0.1253 35 1 3.8532 0.9570 1.0571 36 1 2.2846 3.6155 0.8058 37 1 2.0923 6.0663 0.8464 38 1 1.0676 11.7721 -2.0860 39 1 0.6253 10.7925 -3.5047 40 1 -1.6281 10.4149 -2.5414 41 1 -1.1858 11.3945 -1.1227 42 1 -4.4994 12.6769 -2.0892 43 1 0.5956 6.0069 -3.1686 44 1 0.8009 3.5570 -3.2037 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291146262.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:13 Heat of formation + Delta-G solvation = 29.761464 kcal Electronic energy + Delta-G solvation = -24789.314451 eV Core-core repulsion = 21095.570853 eV Total energy + Delta-G solvation = -3693.743599 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -45.06204 -40.59902 -38.20358 -35.53690 -34.73175 -34.18540 -32.56544 -31.43565 -30.49071 -30.31539 -29.47903 -25.86257 -24.80979 -23.92723 -23.49733 -22.77272 -21.74781 -20.84480 -20.36098 -18.64908 -17.67009 -17.33445 -16.43871 -16.09453 -15.89905 -15.58258 -15.07041 -14.55218 -14.40516 -14.22575 -13.93679 -13.81101 -13.59299 -13.39921 -13.26851 -12.80120 -12.46691 -12.39474 -12.36302 -12.17482 -11.93333 -11.63188 -11.52584 -11.40562 -11.31923 -11.00415 -10.93974 -10.86889 -10.71059 -10.58314 -10.13503 -10.09267 -9.38527 -9.26519 -9.21297 -8.45247 -8.16356 -6.09521 -4.14310 0.78973 1.17429 1.74980 2.71203 2.85311 3.28953 3.31918 3.36036 3.38889 3.71471 3.80942 4.20849 4.30232 4.40218 4.43212 4.53941 4.64188 4.74206 4.85253 5.00641 5.11789 5.13104 5.19701 5.26665 5.27093 5.38434 5.41962 5.52404 5.56487 5.66962 5.69390 5.83111 5.85281 5.88742 6.00240 6.07704 6.16229 6.23599 6.38758 6.45652 6.52804 6.62177 7.15768 7.48973 7.55929 7.85972 8.21264 8.55752 8.90993 9.50601 11.01726 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.026790 B = 0.002072 C = 0.001995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.932900 B =13511.321912 C =14032.727767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.118 4.118 3 C 0.078 3.922 4 H 0.076 0.924 5 C -0.182 4.182 6 O -0.305 6.305 7 C 0.146 3.854 8 C -0.215 4.215 9 C -0.044 4.044 10 C -0.051 4.051 11 C 0.208 3.792 12 N -0.394 5.394 13 O 0.071 5.929 14 C 0.218 3.782 15 C -0.029 4.029 16 C 0.027 3.973 17 C -0.526 4.526 18 H 0.062 0.938 19 C 0.059 3.941 20 N -0.891 5.891 21 Si 0.898 3.102 22 H -0.279 1.279 23 H -0.286 1.286 24 H -0.272 1.272 25 N -0.491 5.491 26 C -0.034 4.034 27 C -0.156 4.156 28 H 0.054 0.946 29 H 0.063 0.937 30 H 0.057 0.943 31 H 0.074 0.926 32 H 0.081 0.919 33 H 0.068 0.932 34 H 0.065 0.935 35 H 0.072 0.928 36 H 0.134 0.866 37 H 0.132 0.868 38 H 0.092 0.908 39 H 0.101 0.899 40 H 0.027 0.973 41 H 0.024 0.976 42 H 0.263 0.737 43 H 0.145 0.855 44 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.647 -22.961 4.604 26.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.156 4.156 3 C 0.022 3.978 4 H 0.093 0.907 5 C -0.239 4.239 6 O -0.219 6.219 7 C 0.099 3.901 8 C -0.233 4.233 9 C -0.064 4.064 10 C -0.053 4.053 11 C -0.061 4.061 12 N -0.104 5.104 13 O 0.014 5.986 14 C -0.001 4.001 15 C -0.068 4.068 16 C -0.011 4.011 17 C -0.564 4.564 18 H 0.080 0.920 19 C -0.143 4.143 20 N -0.529 5.529 21 Si 0.725 3.275 22 H -0.206 1.206 23 H -0.212 1.212 24 H -0.197 1.197 25 N -0.224 5.224 26 C -0.054 4.054 27 C -0.175 4.175 28 H 0.073 0.927 29 H 0.082 0.918 30 H 0.076 0.924 31 H 0.093 0.907 32 H 0.100 0.900 33 H 0.087 0.913 34 H 0.084 0.916 35 H 0.091 0.909 36 H 0.152 0.848 37 H 0.150 0.850 38 H 0.110 0.890 39 H 0.119 0.881 40 H 0.045 0.955 41 H 0.042 0.958 42 H 0.073 0.927 43 H 0.162 0.838 44 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 12.660 -23.669 4.977 27.300 hybrid contribution -0.368 1.059 -0.184 1.136 sum 12.292 -22.610 4.793 26.178 Atomic orbital electron populations 1.21774 0.94973 1.01964 1.02580 1.21634 0.96979 0.93737 1.03209 1.22556 0.95126 0.94070 0.86046 0.90658 1.22397 0.95132 1.03362 1.03053 1.86106 1.83442 1.16661 1.35691 1.19138 0.94178 0.82510 0.94233 1.21142 1.08803 0.94583 0.98822 1.20951 0.94883 0.93409 0.97189 1.17269 1.06222 0.85794 0.95999 1.23793 0.99422 0.96405 0.86517 1.74791 1.22611 0.89927 1.23112 1.85249 1.60159 1.22447 1.30787 1.29573 0.90634 0.97429 0.82439 1.20781 1.02274 0.85899 0.97840 1.19162 0.86050 0.97687 0.98178 1.21065 0.95802 1.09276 1.30242 0.92003 1.25022 0.96509 0.97417 0.95358 1.69970 1.03581 1.39695 1.39691 0.86499 0.78297 0.82915 0.79740 1.20550 1.21195 1.19699 1.72011 1.21974 1.00198 1.28208 1.21088 0.94319 0.92635 0.97366 1.20366 1.05447 0.93497 0.98140 0.92732 0.91823 0.92386 0.90728 0.90047 0.91330 0.91602 0.90937 0.84825 0.84970 0.89001 0.88123 0.95496 0.95773 0.92744 0.83766 0.84499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.01 9.81 37.16 0.36 -0.64 16 2 C -0.12 -0.69 5.64 -26.73 -0.15 -0.84 16 3 C 0.08 0.57 2.22 -26.73 -0.06 0.51 16 4 H 0.08 0.53 6.31 -51.93 -0.33 0.20 16 5 C -0.18 -1.12 9.17 37.16 0.34 -0.78 16 6 O -0.31 -3.06 9.33 -19.23 -0.18 -3.24 16 7 C 0.15 1.63 6.60 -39.12 -0.26 1.38 16 8 C -0.21 -2.33 8.22 -39.49 -0.32 -2.65 16 9 C -0.04 -0.57 9.69 -39.28 -0.38 -0.96 16 10 C -0.05 -0.77 5.88 -104.87 -0.62 -1.39 16 11 C 0.21 3.79 7.80 -156.11 -1.22 2.57 16 12 N -0.39 -7.36 11.85 30.97 0.37 -7.00 16 13 O 0.07 1.35 11.29 18.04 0.20 1.55 16 14 C 0.22 4.20 7.75 -12.98 -0.10 4.10 16 15 C -0.03 -0.55 5.78 -27.88 -0.16 -0.71 16 16 C 0.03 0.67 4.95 -27.88 -0.14 0.54 16 17 C -0.53 -14.00 9.11 -34.44 -0.31 -14.31 16 18 H 0.06 1.55 7.74 -52.48 -0.41 1.14 16 19 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 20 N -0.89 -26.14 13.29 55.43 0.74 -25.40 16 21 Si 0.90 20.88 29.54 -169.99 -5.02 15.86 16 22 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 23 H -0.29 -6.65 7.11 56.52 0.40 -6.24 16 24 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 25 N -0.49 -9.53 11.25 -9.88 -0.11 -9.64 16 26 C -0.03 -0.46 9.69 -39.28 -0.38 -0.85 16 27 C -0.16 -1.82 9.97 -39.48 -0.39 -2.21 16 28 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.06 0.50 7.82 -51.93 -0.41 0.09 16 30 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.06 0.46 6.90 -51.93 -0.36 0.10 16 35 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 36 H 0.13 1.13 5.40 -52.48 -0.28 0.84 16 37 H 0.13 1.65 7.86 -52.49 -0.41 1.23 16 38 H 0.09 1.57 8.14 -51.93 -0.42 1.14 16 39 H 0.10 1.81 8.14 -51.93 -0.42 1.39 16 40 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.02 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 43 H 0.14 1.95 7.87 -52.49 -0.41 1.53 16 44 H 0.14 1.35 8.06 -52.49 -0.42 0.92 16 LS Contribution 373.31 15.07 5.63 5.63 Total: -1.00 -30.60 373.31 -8.66 -39.26 By element: Atomic # 1 Polarization: 4.09 SS G_CDS: -6.39 Total: -2.30 kcal Atomic # 6 Polarization: -10.84 SS G_CDS: -3.89 Total: -14.72 kcal Atomic # 7 Polarization: -43.03 SS G_CDS: 0.99 Total: -42.03 kcal Atomic # 8 Polarization: -1.71 SS G_CDS: 0.02 Total: -1.69 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -30.60 -8.66 -39.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291146262.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.023 kcal (2) G-P(sol) polarization free energy of solvation -30.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.262 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds