Wall clock time and date at job start Tue Mar 31 2020 11:11:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47113 * 2 1 4 4 H 1.08994 * 109.47218 * 54.99927 * 3 2 1 5 5 C 1.52997 * 109.47303 * 175.00034 * 3 2 1 6 6 O 1.42900 * 109.47132 * 294.99894 * 3 2 1 7 7 C 1.35837 * 116.99833 * 155.11482 * 6 3 2 8 8 C 1.38853 * 119.93758 * 5.45020 * 7 6 3 9 9 C 1.37875 * 120.06787 * 179.97438 * 8 7 6 10 10 C 1.39400 * 119.93055 * 0.02562 * 9 8 7 11 11 C 1.48346 * 120.06319 * 179.97438 * 10 9 8 12 12 N 1.30803 * 126.41389 * 359.97438 * 11 10 9 13 13 O 1.21292 * 110.08469 * 180.02562 * 12 11 10 14 14 C 1.33667 * 110.03788 * 359.97438 * 13 12 11 15 15 C 1.50700 * 126.43552 * 179.97438 * 14 13 12 16 16 C 1.53004 * 109.47117 * 270.02469 * 15 14 13 17 17 C 1.50692 * 109.47179 * 179.97438 * 16 15 14 18 18 H 1.08007 * 119.99980 * 0.02562 * 17 16 15 19 19 C 1.37881 * 120.00398 * 180.02562 * 17 16 15 20 20 N 1.31519 * 119.99377 * 0.02562 * 19 17 16 21 21 Si 1.86793 * 120.00419 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47138 * 89.99949 * 21 19 17 23 23 H 1.48498 * 109.47318 * 210.00286 * 21 19 17 24 24 H 1.48507 * 109.47115 * 330.00340 * 21 19 17 25 25 N 1.30969 * 107.12922 * 0.02562 * 14 13 12 26 26 C 1.39403 * 119.87582 * 0.25162 * 10 9 8 27 27 C 1.37875 * 119.92874 * 359.46619 * 26 10 9 28 28 H 1.08994 * 109.47188 * 299.99847 * 1 2 3 29 29 H 1.09002 * 109.47167 * 59.99951 * 1 2 3 30 30 H 1.08996 * 109.47294 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47059 * 239.99799 * 2 1 3 32 32 H 1.09002 * 109.47167 * 120.00049 * 2 1 3 33 33 H 1.08999 * 109.47516 * 59.99917 * 5 3 2 34 34 H 1.08998 * 109.47308 * 179.97438 * 5 3 2 35 35 H 1.08998 * 109.47163 * 300.00191 * 5 3 2 36 36 H 1.08004 * 119.96917 * 0.02562 * 8 7 6 37 37 H 1.07999 * 120.03358 * 180.02562 * 9 8 7 38 38 H 1.08998 * 109.47057 * 30.02753 * 15 14 13 39 39 H 1.08995 * 109.47056 * 150.02302 * 15 14 13 40 40 H 1.08993 * 109.46956 * 300.00005 * 16 15 14 41 41 H 1.09000 * 109.46602 * 59.99915 * 16 15 14 42 42 H 0.96995 * 119.99607 * 180.02562 * 20 19 17 43 43 H 1.07999 * 120.03079 * 179.72703 * 26 10 9 44 44 H 1.08000 * 119.95918 * 180.27358 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5648 1.4444 0.1257 6 8 1.6620 2.0814 -1.2211 7 6 1.5546 3.4353 -1.2010 8 6 1.9172 4.1425 -0.0624 9 6 1.8097 5.5168 -0.0393 10 6 1.3359 6.1964 -1.1605 11 6 1.2185 7.6750 -1.1387 12 7 1.5219 8.4634 -0.1400 13 8 1.3111 9.6189 -0.4425 14 6 0.8423 9.6868 -1.6924 15 6 0.4587 10.9393 -2.4376 16 6 -1.0193 11.2477 -2.1898 17 6 -1.4027 12.5005 -2.9345 18 1 -0.6660 13.0241 -3.5258 19 6 -2.6940 12.9783 -2.8610 20 7 -3.5909 12.3410 -2.1406 21 14 -3.1694 14.5308 -3.7846 22 1 -3.6440 14.1716 -5.1451 23 1 -4.2541 15.2308 -3.0508 24 1 -1.9880 15.4241 -3.8924 25 7 0.7778 8.4604 -2.1474 26 6 0.9671 5.4833 -2.3002 27 6 1.0823 4.1095 -2.3194 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 3.9995 0.9053 -0.7161 34 1 3.9282 2.4720 0.1253 35 1 3.8532 0.9570 1.0571 36 1 2.2846 3.6155 0.8058 37 1 2.0923 6.0663 0.8464 38 1 1.0676 11.7721 -2.0860 39 1 0.6253 10.7925 -3.5047 40 1 -1.6281 10.4149 -2.5414 41 1 -1.1858 11.3945 -1.1227 42 1 -4.4994 12.6769 -2.0892 43 1 0.5956 6.0069 -3.1686 44 1 0.8009 3.5570 -3.2037 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291146262.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:13 Heat of formation + Delta-G solvation = 12.994280 kcal Electronic energy + Delta-G solvation = -24790.041531 eV Core-core repulsion = 21095.570853 eV Total energy + Delta-G solvation = -3694.470678 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -46.52239 -41.43578 -39.11359 -37.00090 -36.15859 -35.14867 -34.31894 -32.44946 -31.99832 -30.94245 -30.60729 -27.74260 -25.82656 -24.85672 -24.62987 -23.89868 -23.27317 -21.84197 -21.49719 -19.48324 -19.17530 -18.74142 -18.31666 -17.10864 -16.98824 -16.49284 -16.32961 -15.90565 -15.62129 -15.16325 -15.03333 -14.83431 -14.53195 -14.42450 -14.30533 -14.01432 -13.70940 -13.69833 -13.47993 -13.18036 -13.05441 -12.82519 -12.75439 -12.64871 -12.45985 -12.25465 -12.02661 -12.00798 -11.94636 -11.88950 -11.58098 -11.48586 -11.33770 -10.90418 -10.56155 -10.17558 -9.18313 -8.19730 -6.31743 -0.37027 0.21958 0.32984 1.38992 1.46841 1.47705 1.58835 1.83713 2.10832 2.43436 2.52618 2.67739 2.95387 3.15700 3.63260 3.76118 3.77386 3.92344 3.96765 4.06954 4.13433 4.30166 4.39515 4.41864 4.48063 4.53025 4.55554 4.62756 4.67219 4.76400 4.83555 4.89426 4.93513 4.96071 5.07352 5.09770 5.18600 5.19177 5.25888 5.38411 5.40276 5.44165 5.53775 5.56562 5.78298 6.13636 6.35324 6.84119 7.08615 7.38369 8.92770 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.026790 B = 0.002072 C = 0.001995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.932900 B =13511.321912 C =14032.727767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.115 4.115 3 C 0.068 3.932 4 H 0.081 0.919 5 C -0.180 4.180 6 O -0.311 6.311 7 C 0.155 3.845 8 C -0.206 4.206 9 C -0.044 4.044 10 C -0.085 4.085 11 C 0.211 3.789 12 N -0.405 5.405 13 O 0.063 5.937 14 C 0.213 3.787 15 C -0.014 4.014 16 C 0.033 3.967 17 C -0.537 4.537 18 H 0.080 0.920 19 C -0.002 4.002 20 N -0.936 5.936 21 Si 0.971 3.029 22 H -0.274 1.274 23 H -0.288 1.288 24 H -0.256 1.256 25 N -0.505 5.505 26 C -0.039 4.039 27 C -0.157 4.157 28 H 0.054 0.946 29 H 0.044 0.956 30 H 0.067 0.933 31 H 0.073 0.927 32 H 0.104 0.896 33 H 0.066 0.934 34 H 0.057 0.943 35 H 0.094 0.906 36 H 0.161 0.839 37 H 0.135 0.865 38 H 0.118 0.882 39 H 0.116 0.884 40 H -0.007 1.007 41 H -0.003 1.003 42 H 0.263 0.737 43 H 0.138 0.862 44 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.981 -24.082 4.513 28.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.152 4.152 3 C 0.013 3.987 4 H 0.099 0.901 5 C -0.237 4.237 6 O -0.224 6.224 7 C 0.107 3.893 8 C -0.224 4.224 9 C -0.064 4.064 10 C -0.087 4.087 11 C -0.059 4.059 12 N -0.117 5.117 13 O 0.009 5.991 14 C -0.006 4.006 15 C -0.053 4.053 16 C -0.005 4.005 17 C -0.575 4.575 18 H 0.098 0.902 19 C -0.200 4.200 20 N -0.576 5.576 21 Si 0.795 3.205 22 H -0.200 1.200 23 H -0.214 1.214 24 H -0.179 1.179 25 N -0.239 5.239 26 C -0.059 4.059 27 C -0.176 4.176 28 H 0.073 0.927 29 H 0.064 0.936 30 H 0.086 0.914 31 H 0.092 0.908 32 H 0.123 0.877 33 H 0.085 0.915 34 H 0.076 0.924 35 H 0.112 0.888 36 H 0.179 0.821 37 H 0.153 0.847 38 H 0.136 0.864 39 H 0.134 0.866 40 H 0.011 0.989 41 H 0.016 0.984 42 H 0.072 0.928 43 H 0.156 0.844 44 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 14.020 -24.783 4.886 28.890 hybrid contribution -0.761 1.173 -0.108 1.403 sum 13.259 -23.610 4.778 27.497 Atomic orbital electron populations 1.21787 0.95630 1.02390 1.01660 1.21670 0.96341 0.92889 1.04317 1.22881 0.96102 0.94670 0.85047 0.90098 1.22393 0.94001 1.03118 1.04185 1.86126 1.83099 1.15764 1.37460 1.19237 0.92805 0.83274 0.93942 1.21364 1.07775 0.93671 0.99631 1.21031 0.94574 0.94291 0.96536 1.17454 1.09140 0.84414 0.97742 1.24333 0.98070 0.97701 0.85758 1.74762 1.23703 0.89825 1.23390 1.85224 1.60451 1.22825 1.30630 1.29520 0.90972 0.97468 0.82650 1.20558 0.98882 0.86896 0.98915 1.18951 0.89293 0.96136 0.96116 1.21568 0.96278 1.09689 1.29950 0.90229 1.26028 0.96682 1.00988 0.96309 1.70124 1.04020 1.41772 1.41656 0.85352 0.78244 0.78730 0.78145 1.19975 1.21364 1.17940 1.72007 1.22313 1.00519 1.29062 1.21070 0.94575 0.93440 0.96777 1.20528 1.05099 0.92798 0.99157 0.92724 0.93638 0.91372 0.90780 0.87742 0.91508 0.92397 0.88754 0.82120 0.84750 0.86405 0.86621 0.98858 0.98429 0.92793 0.84421 0.82764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.76 9.81 71.98 0.71 -1.06 16 2 C -0.12 -1.05 5.64 30.59 0.17 -0.88 16 3 C 0.07 0.82 2.22 30.59 0.07 0.89 16 4 H 0.08 0.90 6.31 -2.39 -0.02 0.88 16 5 C -0.18 -1.72 9.17 71.98 0.66 -1.06 16 6 O -0.31 -5.62 9.33 -91.72 -0.86 -6.47 16 7 C 0.15 3.22 6.60 22.57 0.15 3.36 16 8 C -0.21 -4.11 8.22 22.33 0.18 -3.93 16 9 C -0.04 -1.12 9.69 22.46 0.22 -0.90 16 10 C -0.09 -2.62 5.88 -20.03 -0.12 -2.74 16 11 C 0.21 7.84 7.80 137.26 1.07 8.91 16 12 N -0.40 -15.39 11.85 -59.08 -0.70 -16.09 16 13 O 0.06 2.45 11.29 74.62 0.84 3.30 16 14 C 0.21 8.33 7.75 88.36 0.68 9.02 16 15 C -0.01 -0.52 5.78 29.85 0.17 -0.35 16 16 C 0.03 1.69 4.95 29.85 0.15 1.84 16 17 C -0.54 -28.59 9.11 25.60 0.23 -28.36 16 18 H 0.08 3.87 7.74 -2.91 -0.02 3.85 16 19 C 0.00 -0.12 5.46 84.65 0.46 0.34 16 20 N -0.94 -56.26 13.29 21.45 0.28 -55.97 16 21 Si 0.97 42.67 29.54 68.60 2.03 44.70 16 22 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 23 H -0.29 -12.62 7.11 99.48 0.71 -11.91 16 24 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 25 N -0.51 -20.07 11.25 -302.47 -3.40 -23.48 16 26 C -0.04 -1.06 9.69 22.46 0.22 -0.84 16 27 C -0.16 -3.53 9.97 22.33 0.22 -3.31 16 28 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.04 0.67 7.82 -2.39 -0.02 0.65 16 30 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.10 0.51 8.14 -2.39 -0.02 0.49 16 33 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.06 0.66 6.90 -2.39 -0.02 0.64 16 35 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 36 H 0.16 2.26 5.40 -2.91 -0.02 2.25 16 37 H 0.13 3.28 7.86 -2.91 -0.02 3.26 16 38 H 0.12 3.87 8.14 -2.39 -0.02 3.85 16 39 H 0.12 4.07 8.14 -2.39 -0.02 4.05 16 40 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 41 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 16 42 H 0.26 14.94 8.31 -92.71 -0.77 14.17 16 43 H 0.14 3.84 7.87 -2.91 -0.02 3.82 16 44 H 0.15 2.84 8.06 -2.91 -0.02 2.82 16 Total: -1.00 -67.09 373.31 4.44 -62.64 By element: Atomic # 1 Polarization: 9.44 SS G_CDS: 1.00 Total: 10.44 kcal Atomic # 6 Polarization: -24.32 SS G_CDS: 5.25 Total: -19.07 kcal Atomic # 7 Polarization: -91.72 SS G_CDS: -3.82 Total: -95.54 kcal Atomic # 8 Polarization: -3.16 SS G_CDS: -0.01 Total: -3.17 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 2.03 Total: 44.70 kcal Total: -67.09 4.44 -62.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291146262.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.639 kcal (2) G-P(sol) polarization free energy of solvation -67.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.645 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds