Wall clock time and date at job start Tue Mar 31 2020 11:26:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50693 * 119.99900 * 2 1 4 4 N 1.46901 * 109.47199 * 124.95931 * 3 2 1 5 5 C 1.46904 * 110.99779 * 190.94144 * 4 3 2 6 6 C 1.50702 * 109.47009 * 70.94250 * 5 4 3 7 7 H 1.08006 * 119.99760 * 359.97438 * 6 5 4 8 8 C 1.37872 * 120.00106 * 179.97438 * 6 5 4 9 9 N 1.31511 * 120.00105 * 179.97438 * 8 6 5 10 10 Si 1.86800 * 120.00059 * 359.97438 * 8 6 5 11 11 H 1.48501 * 109.47450 * 89.99958 * 10 8 6 12 12 H 1.48505 * 109.47276 * 210.00201 * 10 8 6 13 13 H 1.48504 * 109.46748 * 329.99884 * 10 8 6 14 14 C 1.46896 * 110.99972 * 66.99072 * 4 3 2 15 15 C 1.53002 * 109.46972 * 201.21731 * 14 4 3 16 16 H 1.09004 * 109.47057 * 53.65905 * 15 14 4 17 17 O 1.42898 * 109.47222 * 293.65518 * 15 14 4 18 18 C 1.53007 * 109.47028 * 173.65640 * 15 14 4 19 19 O 1.42896 * 109.46743 * 185.00009 * 18 15 14 20 20 C 1.35760 * 116.99705 * 180.02562 * 19 18 15 21 21 C 1.38971 * 119.90619 * 179.97438 * 20 19 18 22 22 C 1.37725 * 120.09357 * 180.02562 * 21 20 19 23 23 C 1.39755 * 119.90730 * 359.97438 * 22 21 20 24 24 C 1.43205 * 120.09564 * 180.02562 * 23 22 21 25 25 N 9.86102 * 130.69687 * 280.08933 * 14 1 2 26 26 C 1.39756 * 119.81129 * 0.27740 * 23 22 21 27 27 C 1.37735 * 119.90048 * 359.42140 * 26 23 22 28 28 H 1.07995 * 119.99752 * 359.97438 * 1 2 3 29 29 H 1.08002 * 119.99728 * 180.02562 * 1 2 3 30 30 H 1.08005 * 119.99933 * 179.97438 * 2 1 3 31 31 H 1.08996 * 109.47191 * 4.95395 * 3 2 1 32 32 H 1.09004 * 109.47365 * 244.95808 * 3 2 1 33 33 H 1.09004 * 109.46923 * 190.93238 * 5 4 3 34 34 H 1.08989 * 109.47409 * 310.93903 * 5 4 3 35 35 H 0.97005 * 120.00323 * 179.97438 * 9 8 6 36 36 H 1.09005 * 109.47519 * 81.21703 * 14 4 3 37 37 H 1.09001 * 109.47201 * 321.21705 * 14 4 3 38 38 H 0.96693 * 114.00082 * 300.00057 * 17 15 14 39 39 H 1.09002 * 109.46577 * 65.00226 * 18 15 14 40 40 H 1.08997 * 109.46891 * 305.00138 * 18 15 14 41 41 H 1.07998 * 119.95012 * 359.97438 * 21 20 19 42 42 H 1.08007 * 120.04769 * 179.97438 * 22 21 20 43 43 H 1.08004 * 120.04703 * 179.71590 * 26 23 22 44 44 H 1.08004 * 119.95109 * 180.29378 * 27 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9956 1.3324 1.1351 5 6 3.5569 2.6769 1.3231 6 6 2.4876 3.5982 1.8514 7 1 1.4907 3.2225 2.0292 8 6 2.7820 4.9205 2.1077 9 7 1.8488 5.7246 2.5682 10 14 4.5063 5.5700 1.8008 11 1 4.6041 6.0762 0.4081 12 1 4.7956 6.6744 2.7504 13 1 5.4902 4.4755 1.9999 14 6 4.0615 0.3360 0.9650 15 6 4.6791 0.0124 2.3269 16 1 3.8924 -0.2800 3.0224 17 8 5.3548 1.1667 2.8300 18 6 5.6777 -1.1368 2.1740 19 8 6.1675 -1.5166 3.4615 20 6 7.0699 -2.5300 3.5032 21 6 7.5864 -2.9481 4.7238 22 6 8.5024 -3.9754 4.7705 23 6 8.9121 -4.5981 3.5883 24 6 9.8640 -5.6671 3.6323 25 7 10.6167 -6.5171 3.6675 26 6 8.3942 -4.1710 2.3626 27 6 7.4738 -3.1470 2.3254 28 1 -0.5399 0.9353 0.0004 29 1 -0.5400 -0.9354 0.0004 30 1 1.8501 -0.9354 0.0004 31 1 1.3585 2.1316 0.0887 32 1 2.6219 1.4023 -0.9311 33 1 4.3806 2.6303 2.0354 34 1 3.9228 3.0546 0.3685 35 1 2.0559 6.6549 2.7489 36 1 4.8301 0.7354 0.3032 37 1 3.6440 -0.5722 0.5303 38 1 6.0693 1.4834 2.2607 39 1 6.5104 -0.8137 1.5492 40 1 5.1826 -1.9886 1.7077 41 1 7.2696 -2.4661 5.6368 42 1 8.9037 -4.2995 5.7195 43 1 8.7116 -4.6464 1.4462 44 1 7.0694 -2.8195 1.3790 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292252675.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:06 Heat of formation + Delta-G solvation = 2.879667 kcal Electronic energy + Delta-G solvation = -25176.100633 eV Core-core repulsion = 21481.191352 eV Total energy + Delta-G solvation = -3694.909281 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.64547 -38.79109 -37.84013 -36.46407 -35.84925 -33.13745 -32.30942 -31.76820 -31.15544 -30.20712 -27.79569 -26.37281 -24.09964 -23.69743 -22.93683 -21.53900 -20.54728 -19.32579 -19.30213 -18.35794 -17.01262 -16.70220 -16.63200 -15.85130 -15.50432 -15.12986 -15.04983 -14.46622 -14.36045 -14.23041 -14.01119 -13.97155 -13.88178 -13.51370 -13.31358 -12.87614 -12.70226 -12.57508 -12.46966 -12.26834 -11.82776 -11.82591 -11.44601 -11.34330 -11.19814 -10.82150 -10.79131 -10.65014 -10.30123 -9.91346 -9.62814 -9.57631 -9.23683 -8.92891 -8.62001 -8.50745 -7.47553 -6.01048 -3.96668 0.45514 0.85222 2.35108 2.58529 2.59402 2.76644 3.29212 3.37591 3.38469 3.48056 3.57848 4.27374 4.32921 4.42608 4.45557 4.50894 4.66452 4.83390 4.90527 5.04380 5.07741 5.10796 5.27873 5.31069 5.31862 5.42278 5.48620 5.51290 5.60225 5.69316 5.81752 5.88487 5.95566 6.14568 6.15952 6.20715 6.41812 6.83755 6.91429 6.98278 7.01646 7.16315 7.17636 7.68311 7.83852 7.86635 7.97335 8.68285 9.07779 9.60834 11.12441 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.015734 B = 0.002656 C = 0.002376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1779.115455 B =10539.135288 C =11784.068167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.142 4.142 3 C 0.083 3.917 4 N -0.513 5.513 5 C 0.144 3.856 6 C -0.503 4.503 7 H 0.078 0.922 8 C 0.066 3.934 9 N -0.903 5.903 10 Si 0.876 3.124 11 H -0.282 1.282 12 H -0.287 1.287 13 H -0.264 1.264 14 C 0.023 3.977 15 C 0.118 3.882 16 H 0.118 0.882 17 O -0.532 6.532 18 C 0.025 3.975 19 O -0.292 6.292 20 C 0.169 3.831 21 C -0.155 4.155 22 C -0.028 4.028 23 C -0.081 4.081 24 C 0.262 3.738 25 N -0.430 5.430 26 C -0.026 4.026 27 C -0.216 4.216 28 H 0.098 0.902 29 H 0.090 0.910 30 H 0.098 0.902 31 H 0.095 0.905 32 H 0.028 0.972 33 H 0.066 0.934 34 H -0.023 1.023 35 H 0.262 0.738 36 H 0.032 0.968 37 H 0.075 0.925 38 H 0.366 0.634 39 H 0.067 0.933 40 H 0.074 0.926 41 H 0.144 0.856 42 H 0.139 0.861 43 H 0.134 0.866 44 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.024 -18.204 -2.725 20.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.160 4.160 3 C -0.044 4.044 4 N -0.237 5.237 5 C 0.019 3.981 6 C -0.541 4.541 7 H 0.096 0.904 8 C -0.135 4.135 9 N -0.542 5.542 10 Si 0.704 3.296 11 H -0.208 1.208 12 H -0.213 1.213 13 H -0.189 1.189 14 C -0.106 4.106 15 C 0.058 3.942 16 H 0.136 0.864 17 O -0.336 6.336 18 C -0.051 4.051 19 O -0.203 6.203 20 C 0.121 3.879 21 C -0.173 4.173 22 C -0.049 4.049 23 C -0.085 4.085 24 C -0.053 4.053 25 N -0.105 5.105 26 C -0.047 4.047 27 C -0.235 4.235 28 H 0.117 0.883 29 H 0.109 0.891 30 H 0.116 0.884 31 H 0.114 0.886 32 H 0.046 0.954 33 H 0.083 0.917 34 H -0.006 1.006 35 H 0.072 0.928 36 H 0.050 0.950 37 H 0.093 0.907 38 H 0.213 0.787 39 H 0.085 0.915 40 H 0.092 0.908 41 H 0.162 0.838 42 H 0.157 0.843 43 H 0.152 0.848 44 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 10.374 -19.371 -1.549 22.029 hybrid contribution 1.402 0.940 -1.664 2.370 sum 11.776 -18.432 -3.212 22.107 Atomic orbital electron populations 1.23770 0.95982 1.01496 1.01705 1.22950 0.96005 0.98121 0.98932 1.21234 0.96014 0.95886 0.91295 1.61923 1.14991 1.07290 1.39461 1.20664 0.97800 0.84362 0.95301 1.20998 0.97822 0.92828 1.42449 0.90406 1.24885 0.96706 0.96846 0.95040 1.69894 1.32990 1.05557 1.45795 0.86848 0.85947 0.78941 0.77860 1.20781 1.21331 1.18915 1.22644 0.95158 0.97922 0.94919 1.21977 0.92432 0.82744 0.97096 0.86429 1.86808 1.51187 1.44778 1.50845 1.23846 0.98376 0.99570 0.83346 1.86211 1.54535 1.47525 1.32072 1.19435 0.87839 0.86608 0.94041 1.20426 1.00301 0.99766 0.96839 1.20970 0.93865 0.92878 0.97150 1.15895 1.00535 0.97076 0.95022 1.25674 0.92980 0.92896 0.93758 1.81263 1.10887 1.11083 1.07304 1.20934 0.93183 0.94068 0.96466 1.21234 1.03308 1.00834 0.98140 0.88320 0.89138 0.88406 0.88641 0.95429 0.91671 1.00574 0.92793 0.95007 0.90674 0.78732 0.91457 0.90755 0.83802 0.84326 0.84811 0.84363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.63 14.32 29.01 0.42 -2.21 16 2 C -0.14 -2.04 9.18 -36.03 -0.33 -2.37 16 3 C 0.08 1.45 5.25 -4.98 -0.03 1.43 16 4 N -0.51 -9.67 4.36 -237.52 -1.04 -10.71 16 5 C 0.14 3.27 3.59 -4.97 -0.02 3.25 16 6 C -0.50 -13.93 8.97 -34.44 -0.31 -14.24 16 7 H 0.08 2.38 7.77 -52.48 -0.41 1.97 16 8 C 0.07 1.89 5.47 -17.82 -0.10 1.79 16 9 N -0.90 -27.50 13.96 55.43 0.77 -26.73 16 10 Si 0.88 21.09 27.47 -169.99 -4.67 16.42 16 11 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 12 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 13 H -0.26 -5.95 6.54 56.52 0.37 -5.58 16 14 C 0.02 0.32 4.65 -3.83 -0.02 0.30 16 15 C 0.12 1.55 3.47 -26.73 -0.09 1.45 16 16 H 0.12 1.76 8.14 -51.93 -0.42 1.33 16 17 O -0.53 -8.46 10.54 -40.09 -0.42 -8.88 16 18 C 0.02 0.23 4.37 37.16 0.16 0.39 16 19 O -0.29 -3.18 10.09 -23.85 -0.24 -3.42 16 20 C 0.17 1.50 6.69 -39.04 -0.26 1.24 16 21 C -0.15 -1.21 9.97 -39.50 -0.39 -1.60 16 22 C -0.03 -0.19 9.75 -39.20 -0.38 -0.57 16 23 C -0.08 -0.60 5.74 -106.84 -0.61 -1.22 16 24 C 0.26 2.41 15.33 -22.47 -0.34 2.07 16 25 N -0.43 -4.99 18.54 41.84 0.78 -4.22 16 26 C -0.03 -0.17 9.75 -39.20 -0.38 -0.55 16 27 C -0.22 -1.54 9.01 -39.50 -0.36 -1.90 16 28 H 0.10 1.43 7.84 -52.49 -0.41 1.02 16 29 H 0.09 1.03 8.06 -52.49 -0.42 0.61 16 30 H 0.10 1.19 6.79 -52.48 -0.36 0.84 16 31 H 0.10 1.95 6.66 -51.93 -0.35 1.60 16 32 H 0.03 0.46 8.11 -51.93 -0.42 0.03 16 33 H 0.07 1.48 3.97 -51.93 -0.21 1.27 16 34 H -0.02 -0.53 7.50 -51.94 -0.39 -0.92 16 35 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 36 H 0.03 0.41 7.98 -51.93 -0.41 0.00 16 37 H 0.07 0.85 6.18 -51.93 -0.32 0.53 16 38 H 0.37 4.63 8.87 45.56 0.40 5.03 16 39 H 0.07 0.51 7.65 -51.93 -0.40 0.11 16 40 H 0.07 0.54 7.65 -51.93 -0.40 0.14 16 41 H 0.14 1.01 8.06 -52.49 -0.42 0.59 16 42 H 0.14 0.65 8.06 -52.48 -0.42 0.23 16 43 H 0.13 0.63 8.06 -52.48 -0.42 0.21 16 44 H 0.14 0.76 6.28 -52.48 -0.33 0.43 16 LS Contribution 373.15 15.07 5.62 5.62 Total: -1.00 -33.36 373.15 -7.52 -40.87 By element: Atomic # 1 Polarization: 9.06 SS G_CDS: -5.27 Total: 3.79 kcal Atomic # 6 Polarization: -9.70 SS G_CDS: -3.05 Total: -12.74 kcal Atomic # 7 Polarization: -42.17 SS G_CDS: 0.51 Total: -41.65 kcal Atomic # 8 Polarization: -11.64 SS G_CDS: -0.66 Total: -12.31 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -4.67 Total: 16.42 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -33.36 -7.52 -40.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292252675.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.753 kcal (2) G-P(sol) polarization free energy of solvation -33.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.873 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds