Wall clock time and date at job start Tue Mar 31 2020 11:26:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50693 * 119.99900 * 2 1 4 4 N 1.46901 * 109.47199 * 124.95931 * 3 2 1 5 5 C 1.46904 * 110.99779 * 190.94144 * 4 3 2 6 6 C 1.50702 * 109.47009 * 70.94250 * 5 4 3 7 7 H 1.08006 * 119.99760 * 359.97438 * 6 5 4 8 8 C 1.37872 * 120.00106 * 179.97438 * 6 5 4 9 9 N 1.31511 * 120.00105 * 179.97438 * 8 6 5 10 10 Si 1.86800 * 120.00059 * 359.97438 * 8 6 5 11 11 H 1.48501 * 109.47450 * 89.99958 * 10 8 6 12 12 H 1.48505 * 109.47276 * 210.00201 * 10 8 6 13 13 H 1.48504 * 109.46748 * 329.99884 * 10 8 6 14 14 C 1.46896 * 110.99972 * 66.99072 * 4 3 2 15 15 C 1.53002 * 109.46972 * 201.21731 * 14 4 3 16 16 H 1.09004 * 109.47057 * 53.65905 * 15 14 4 17 17 O 1.42898 * 109.47222 * 293.65518 * 15 14 4 18 18 C 1.53007 * 109.47028 * 173.65640 * 15 14 4 19 19 O 1.42896 * 109.46743 * 185.00009 * 18 15 14 20 20 C 1.35760 * 116.99705 * 180.02562 * 19 18 15 21 21 C 1.38971 * 119.90619 * 179.97438 * 20 19 18 22 22 C 1.37725 * 120.09357 * 180.02562 * 21 20 19 23 23 C 1.39755 * 119.90730 * 359.97438 * 22 21 20 24 24 C 1.43205 * 120.09564 * 180.02562 * 23 22 21 25 25 N 9.86102 * 130.69687 * 280.08933 * 14 1 2 26 26 C 1.39756 * 119.81129 * 0.27740 * 23 22 21 27 27 C 1.37735 * 119.90048 * 359.42140 * 26 23 22 28 28 H 1.07995 * 119.99752 * 359.97438 * 1 2 3 29 29 H 1.08002 * 119.99728 * 180.02562 * 1 2 3 30 30 H 1.08005 * 119.99933 * 179.97438 * 2 1 3 31 31 H 1.08996 * 109.47191 * 4.95395 * 3 2 1 32 32 H 1.09004 * 109.47365 * 244.95808 * 3 2 1 33 33 H 1.09004 * 109.46923 * 190.93238 * 5 4 3 34 34 H 1.08989 * 109.47409 * 310.93903 * 5 4 3 35 35 H 0.97005 * 120.00323 * 179.97438 * 9 8 6 36 36 H 1.09005 * 109.47519 * 81.21703 * 14 4 3 37 37 H 1.09001 * 109.47201 * 321.21705 * 14 4 3 38 38 H 0.96693 * 114.00082 * 300.00057 * 17 15 14 39 39 H 1.09002 * 109.46577 * 65.00226 * 18 15 14 40 40 H 1.08997 * 109.46891 * 305.00138 * 18 15 14 41 41 H 1.07998 * 119.95012 * 359.97438 * 21 20 19 42 42 H 1.08007 * 120.04769 * 179.97438 * 22 21 20 43 43 H 1.08004 * 120.04703 * 179.71590 * 26 23 22 44 44 H 1.08004 * 119.95109 * 180.29378 * 27 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9956 1.3324 1.1351 5 6 3.5569 2.6769 1.3231 6 6 2.4876 3.5982 1.8514 7 1 1.4907 3.2225 2.0292 8 6 2.7820 4.9205 2.1077 9 7 1.8488 5.7246 2.5682 10 14 4.5063 5.5700 1.8008 11 1 4.6041 6.0762 0.4081 12 1 4.7956 6.6744 2.7504 13 1 5.4902 4.4755 1.9999 14 6 4.0615 0.3360 0.9650 15 6 4.6791 0.0124 2.3269 16 1 3.8924 -0.2800 3.0224 17 8 5.3548 1.1667 2.8300 18 6 5.6777 -1.1368 2.1740 19 8 6.1675 -1.5166 3.4615 20 6 7.0699 -2.5300 3.5032 21 6 7.5864 -2.9481 4.7238 22 6 8.5024 -3.9754 4.7705 23 6 8.9121 -4.5981 3.5883 24 6 9.8640 -5.6671 3.6323 25 7 10.6167 -6.5171 3.6675 26 6 8.3942 -4.1710 2.3626 27 6 7.4738 -3.1470 2.3254 28 1 -0.5399 0.9353 0.0004 29 1 -0.5400 -0.9354 0.0004 30 1 1.8501 -0.9354 0.0004 31 1 1.3585 2.1316 0.0887 32 1 2.6219 1.4023 -0.9311 33 1 4.3806 2.6303 2.0354 34 1 3.9228 3.0546 0.3685 35 1 2.0559 6.6549 2.7489 36 1 4.8301 0.7354 0.3032 37 1 3.6440 -0.5722 0.5303 38 1 6.0693 1.4834 2.2607 39 1 6.5104 -0.8137 1.5492 40 1 5.1826 -1.9886 1.7077 41 1 7.2696 -2.4661 5.6368 42 1 8.9037 -4.2995 5.7195 43 1 8.7116 -4.6464 1.4462 44 1 7.0694 -2.8195 1.3790 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292252675.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:06 Heat of formation + Delta-G solvation = -20.809613 kcal Electronic energy + Delta-G solvation = -25177.127877 eV Core-core repulsion = 21481.191352 eV Total energy + Delta-G solvation = -3695.936525 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.27482 -39.76354 -38.76812 -37.36343 -36.89802 -34.87172 -33.87145 -32.44682 -31.92656 -31.11240 -29.45781 -27.41558 -25.46863 -24.29654 -23.88199 -22.51585 -22.09293 -20.48702 -19.88243 -19.10861 -18.83417 -17.75012 -17.47854 -16.98621 -16.52963 -16.36388 -15.87395 -15.61532 -15.36037 -15.23598 -15.02153 -14.91477 -14.68591 -14.47977 -14.41976 -14.26859 -13.90405 -13.58468 -13.37181 -13.32947 -13.06261 -12.94156 -12.75181 -12.46574 -12.37784 -12.11465 -11.87836 -11.82959 -11.74160 -11.50696 -11.34836 -10.81392 -10.50122 -10.22311 -10.07535 -9.22850 -8.90982 -8.20783 -6.21388 -0.13275 0.35492 1.37500 1.41964 1.46548 1.52560 1.64975 1.94544 2.07600 2.41337 2.90057 2.93486 3.13882 3.34196 3.54897 3.76170 3.87273 3.99240 4.09315 4.12896 4.13767 4.26124 4.33796 4.41122 4.45306 4.51256 4.54473 4.64383 4.74094 4.91707 5.00797 5.01746 5.06277 5.11046 5.17077 5.28418 5.31403 5.36252 5.63578 5.72320 5.75672 6.02740 6.07423 6.38246 6.45752 6.49830 6.74833 6.84101 6.92160 7.40555 8.96531 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.015734 B = 0.002656 C = 0.002376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1779.115455 B =10539.135288 C =11784.068167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.145 4.145 3 C 0.084 3.916 4 N -0.536 5.536 5 C 0.156 3.844 6 C -0.506 4.506 7 H 0.027 0.973 8 C -0.002 4.002 9 N -0.957 5.957 10 Si 0.950 3.050 11 H -0.272 1.272 12 H -0.290 1.290 13 H -0.234 1.234 14 C 0.025 3.975 15 C 0.118 3.882 16 H 0.091 0.909 17 O -0.564 6.564 18 C 0.033 3.967 19 O -0.318 6.318 20 C 0.154 3.846 21 C -0.166 4.166 22 C -0.021 4.021 23 C -0.090 4.090 24 C 0.286 3.714 25 N -0.477 5.477 26 C -0.020 4.020 27 C -0.213 4.213 28 H 0.077 0.923 29 H 0.122 0.878 30 H 0.133 0.867 31 H 0.048 0.952 32 H 0.040 0.960 33 H 0.073 0.927 34 H -0.021 1.021 35 H 0.263 0.737 36 H 0.050 0.950 37 H 0.107 0.893 38 H 0.379 0.621 39 H 0.091 0.909 40 H 0.102 0.898 41 H 0.145 0.855 42 H 0.156 0.844 43 H 0.155 0.845 44 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.409 -20.350 -4.292 24.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.163 4.163 3 C -0.043 4.043 4 N -0.259 5.259 5 C 0.029 3.971 6 C -0.545 4.545 7 H 0.045 0.955 8 C -0.198 4.198 9 N -0.599 5.599 10 Si 0.773 3.227 11 H -0.197 1.197 12 H -0.217 1.217 13 H -0.157 1.157 14 C -0.104 4.104 15 C 0.058 3.942 16 H 0.109 0.891 17 O -0.371 6.371 18 C -0.043 4.043 19 O -0.231 6.231 20 C 0.106 3.894 21 C -0.185 4.185 22 C -0.042 4.042 23 C -0.093 4.093 24 C -0.028 4.028 25 N -0.153 5.153 26 C -0.040 4.040 27 C -0.231 4.231 28 H 0.095 0.905 29 H 0.140 0.860 30 H 0.151 0.849 31 H 0.067 0.933 32 H 0.058 0.942 33 H 0.090 0.910 34 H -0.003 1.003 35 H 0.072 0.928 36 H 0.069 0.931 37 H 0.125 0.875 38 H 0.227 0.773 39 H 0.109 0.891 40 H 0.120 0.880 41 H 0.163 0.837 42 H 0.173 0.827 43 H 0.173 0.827 44 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 12.766 -21.561 -3.134 25.252 hybrid contribution 0.511 1.572 -1.140 2.008 sum 13.278 -19.989 -4.274 24.375 Atomic orbital electron populations 1.23944 0.96125 1.02019 1.00837 1.22966 0.96089 0.97670 0.99616 1.21135 0.95424 0.96284 0.91461 1.61743 1.17070 1.06366 1.40757 1.20403 0.96020 0.85658 0.95015 1.21333 0.97247 0.94064 1.41827 0.95485 1.25919 1.01768 0.97200 0.94910 1.70082 1.35836 1.06003 1.47938 0.85678 0.80397 0.78734 0.77884 1.19722 1.21655 1.15694 1.22756 0.94241 0.97526 0.95845 1.21911 0.92886 0.83507 0.95891 0.89118 1.86741 1.52003 1.46238 1.52088 1.23715 0.98390 0.98876 0.83284 1.86156 1.55384 1.48500 1.33013 1.19646 0.88001 0.86656 0.95049 1.20548 1.00736 1.00216 0.96959 1.21117 0.93138 0.92129 0.97791 1.15997 1.00598 0.96891 0.95862 1.25862 0.92241 0.92335 0.92357 1.81290 1.12536 1.12680 1.08832 1.21174 0.92393 0.93582 0.96859 1.21422 1.02974 1.00403 0.98316 0.90454 0.86039 0.84914 0.93346 0.94179 0.90950 1.00289 0.92845 0.93146 0.87478 0.77255 0.89059 0.88048 0.83733 0.82683 0.82709 0.82234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -5.06 14.32 67.78 0.97 -4.09 16 2 C -0.15 -3.91 9.18 25.64 0.24 -3.68 16 3 C 0.08 2.93 5.25 85.55 0.45 3.38 16 4 N -0.54 -19.79 4.36 -905.37 -3.95 -23.74 16 5 C 0.16 6.99 3.59 85.56 0.31 7.30 16 6 C -0.51 -29.23 8.97 25.60 0.23 -29.00 16 7 H 0.03 1.77 7.77 -2.91 -0.02 1.75 16 8 C 0.00 -0.13 5.47 84.65 0.46 0.33 16 9 N -0.96 -60.95 13.96 21.44 0.30 -60.65 16 10 Si 0.95 43.64 27.47 68.60 1.88 45.53 16 11 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 12 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 13 H -0.23 -9.51 6.54 99.48 0.65 -8.86 16 14 C 0.02 0.59 4.65 86.30 0.40 1.00 16 15 C 0.12 2.82 3.47 30.60 0.11 2.93 16 16 H 0.09 2.64 8.14 -2.39 -0.02 2.63 16 17 O -0.56 -16.94 10.54 -144.34 -1.52 -18.46 16 18 C 0.03 0.48 4.37 71.98 0.31 0.80 16 19 O -0.32 -6.17 10.09 -86.22 -0.87 -7.04 16 20 C 0.15 2.33 6.69 22.62 0.15 2.48 16 21 C -0.17 -2.29 9.97 22.32 0.22 -2.06 16 22 C -0.02 -0.24 9.75 22.52 0.22 -0.02 16 23 C -0.09 -1.10 5.74 -21.30 -0.12 -1.23 16 24 C 0.29 4.77 15.33 88.33 1.35 6.12 16 25 N -0.48 -10.61 18.54 19.00 0.35 -10.26 16 26 C -0.02 -0.19 9.75 22.52 0.22 0.03 16 27 C -0.21 -2.21 9.01 22.32 0.20 -2.01 16 28 H 0.08 2.35 7.84 -2.91 -0.02 2.32 16 29 H 0.12 2.46 8.06 -2.91 -0.02 2.43 16 30 H 0.13 2.66 6.79 -2.91 -0.02 2.64 16 31 H 0.05 2.10 6.66 -2.39 -0.02 2.09 16 32 H 0.04 1.27 8.11 -2.38 -0.02 1.25 16 33 H 0.07 3.18 3.97 -2.38 -0.01 3.17 16 34 H -0.02 -0.90 7.50 -2.39 -0.02 -0.92 16 35 H 0.26 15.67 8.31 -92.70 -0.77 14.90 16 36 H 0.05 1.08 7.98 -2.38 -0.02 1.06 16 37 H 0.11 1.91 6.18 -2.39 -0.01 1.89 16 38 H 0.38 8.55 8.87 -74.06 -0.66 7.90 16 39 H 0.09 0.93 7.65 -2.39 -0.02 0.91 16 40 H 0.10 0.95 7.65 -2.39 -0.02 0.93 16 41 H 0.14 1.89 8.06 -2.91 -0.02 1.86 16 42 H 0.16 1.14 8.06 -2.91 -0.02 1.12 16 43 H 0.16 0.83 8.06 -2.91 -0.02 0.80 16 44 H 0.16 0.93 6.28 -2.91 -0.02 0.91 16 Total: -1.00 -77.76 373.15 2.23 -75.54 By element: Atomic # 1 Polarization: 16.49 SS G_CDS: 0.31 Total: 16.80 kcal Atomic # 6 Polarization: -23.44 SS G_CDS: 5.72 Total: -17.72 kcal Atomic # 7 Polarization: -91.35 SS G_CDS: -3.30 Total: -94.65 kcal Atomic # 8 Polarization: -23.11 SS G_CDS: -2.39 Total: -25.50 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 1.88 Total: 45.53 kcal Total: -77.76 2.23 -75.54 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292252675.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.728 kcal (2) G-P(sol) polarization free energy of solvation -77.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds