Wall clock time and date at job start Tue Mar 31 2020 11:26:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50697 * 119.99929 * 2 1 4 4 N 1.46898 * 109.47013 * 125.00268 * 3 2 1 5 5 C 1.46902 * 110.99867 * 288.24280 * 4 3 2 6 6 C 1.50701 * 109.47299 * 298.84134 * 5 4 3 7 7 H 1.07998 * 119.99897 * 4.44865 * 6 5 4 8 8 C 1.37872 * 120.00059 * 184.44491 * 6 5 4 9 9 N 1.31519 * 120.00268 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 120.00020 * 179.97438 * 8 6 5 11 11 H 1.48505 * 109.47055 * 60.00496 * 10 8 6 12 12 H 1.48500 * 109.47107 * 180.02562 * 10 8 6 13 13 H 1.48499 * 109.47455 * 300.00187 * 10 8 6 14 14 C 1.46908 * 111.00181 * 164.29462 * 4 3 2 15 15 C 1.52999 * 109.47005 * 200.13899 * 14 4 3 16 16 H 1.08989 * 109.47346 * 300.77804 * 15 14 4 17 17 O 1.42904 * 109.46875 * 60.78356 * 15 14 4 18 18 C 1.53004 * 109.46617 * 180.77488 * 15 14 4 19 19 O 1.42906 * 109.46811 * 175.00224 * 18 15 14 20 20 C 1.35749 * 117.00069 * 180.02562 * 19 18 15 21 21 C 1.38967 * 119.90616 * 359.72819 * 20 19 18 22 22 C 1.37728 * 120.09610 * 179.72253 * 21 20 19 23 23 C 1.39754 * 119.90450 * 0.55093 * 22 21 20 24 24 C 1.43197 * 120.09631 * 179.70410 * 23 22 21 25 25 N 9.86093 * 168.34477 * 192.91037 * 14 2 1 26 26 C 1.39759 * 119.81101 * 359.72129 * 23 22 21 27 27 C 1.37727 * 119.90532 * 0.02562 * 26 23 22 28 28 H 1.07998 * 119.99975 * 179.97438 * 1 2 3 29 29 H 1.08001 * 120.00129 * 0.02562 * 1 2 3 30 30 H 1.08001 * 120.00129 * 179.97438 * 2 1 3 31 31 H 1.08995 * 109.47555 * 4.99506 * 3 2 1 32 32 H 1.09006 * 109.47041 * 244.99542 * 3 2 1 33 33 H 1.09006 * 109.47089 * 58.83656 * 5 4 3 34 34 H 1.08994 * 109.47559 * 178.83737 * 5 4 3 35 35 H 0.96996 * 120.00290 * 179.97438 * 9 8 6 36 36 H 1.09001 * 109.46937 * 80.13820 * 14 4 3 37 37 H 1.09003 * 109.46489 * 320.14091 * 14 4 3 38 38 H 0.96696 * 114.00180 * 59.99698 * 17 15 14 39 39 H 1.08995 * 109.46676 * 55.00791 * 18 15 14 40 40 H 1.08991 * 109.47414 * 295.00096 * 18 15 14 41 41 H 1.08004 * 119.95147 * 359.97438 * 21 20 19 42 42 H 1.08002 * 120.05155 * 180.25499 * 22 21 20 43 43 H 1.08006 * 120.04703 * 179.97438 * 26 23 22 44 44 H 1.08004 * 119.95701 * 179.97438 * 27 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9963 1.3319 1.1345 5 6 2.2753 1.4834 2.4054 6 6 1.5185 2.7866 2.4014 7 1 1.5096 3.4031 1.5148 8 6 0.8374 3.1917 3.5296 9 7 0.8477 2.4406 4.6092 10 14 -0.1000 4.8074 3.5249 11 1 -1.1441 4.7709 2.4695 12 1 -0.7409 5.0117 4.8489 13 1 0.8400 5.9244 3.2529 14 6 3.9978 2.3937 0.9677 15 6 5.2102 2.0946 1.8516 16 1 4.8951 2.0371 2.8933 17 8 5.7895 0.8484 1.4596 18 6 6.2450 3.2104 1.6924 19 8 7.3245 2.9923 2.6031 20 6 8.3343 3.8994 2.5903 21 6 8.2879 4.9757 1.7125 22 6 9.3076 5.9014 1.7002 23 6 10.3957 5.7509 2.5642 24 6 11.4612 6.7074 2.5504 25 7 12.3077 7.4650 2.5377 26 6 10.4412 4.6638 3.4414 27 6 9.4147 3.7456 3.4508 28 1 -0.5400 -0.9353 -0.0004 29 1 -0.5400 0.9353 -0.0004 30 1 1.8500 -0.9353 0.0004 31 1 1.3586 2.1316 0.0895 32 1 2.6213 1.4025 -0.9314 33 1 1.5749 0.6569 2.5265 34 1 2.9878 1.4796 3.2301 35 1 0.3689 2.7258 5.4031 36 1 3.5641 3.3509 1.2574 37 1 4.3105 2.4374 -0.0756 38 1 6.0933 0.8272 0.5419 39 1 5.7781 4.1719 1.9060 40 1 6.6255 3.2100 0.6711 41 1 7.4489 5.0886 1.0418 42 1 9.2687 6.7398 1.0206 43 1 11.2805 4.5436 4.1104 44 1 9.4492 2.9051 4.1281 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292252678.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:10 Heat of formation + Delta-G solvation = -6.454918 kcal Electronic energy + Delta-G solvation = -25276.975240 eV Core-core repulsion = 21581.661182 eV Total energy + Delta-G solvation = -3695.314059 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.49308 -38.56557 -37.62458 -36.38167 -35.81218 -33.06634 -32.27809 -31.62046 -30.92429 -29.76819 -27.20812 -26.14808 -24.13539 -23.56754 -23.17476 -21.71151 -20.19062 -19.18774 -19.06834 -18.24354 -16.80686 -16.49699 -16.41644 -15.58380 -15.28757 -14.96028 -14.74167 -14.50432 -14.31584 -14.22556 -14.09082 -13.86194 -13.66309 -13.35108 -13.04296 -12.79170 -12.71333 -12.41138 -12.32903 -12.26313 -11.39255 -11.22398 -11.12878 -11.06563 -10.96197 -10.92221 -10.60451 -10.53263 -10.27882 -10.02620 -9.77169 -9.61182 -9.45280 -8.74659 -8.49368 -8.48234 -7.26075 -6.09431 -4.19433 0.57706 0.97730 2.44439 2.70350 2.83216 2.98369 3.20829 3.27844 3.28478 3.59528 3.68582 4.32624 4.41653 4.47419 4.63094 4.74849 4.80256 5.02164 5.06286 5.19855 5.20898 5.25438 5.42438 5.51053 5.59591 5.61144 5.72828 5.76795 5.83388 5.95484 6.00351 6.04576 6.27009 6.31221 6.41652 6.46703 6.59856 7.11987 7.17190 7.24817 7.27395 7.36972 7.47019 7.84304 7.91987 8.03844 8.17829 8.21822 8.90403 9.47118 10.95380 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.014083 B = 0.002807 C = 0.002516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1987.695540 B = 9972.015064 C =11124.367742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.127 4.127 3 C 0.083 3.917 4 N -0.527 5.527 5 C 0.187 3.813 6 C -0.553 4.553 7 H 0.055 0.945 8 C 0.068 3.932 9 N -0.886 5.886 10 Si 0.885 3.115 11 H -0.277 1.277 12 H -0.286 1.286 13 H -0.278 1.278 14 C 0.032 3.968 15 C 0.119 3.881 16 H 0.116 0.884 17 O -0.539 6.539 18 C 0.025 3.975 19 O -0.293 6.293 20 C 0.171 3.829 21 C -0.216 4.216 22 C -0.025 4.025 23 C -0.084 4.084 24 C 0.263 3.737 25 N -0.432 5.432 26 C -0.028 4.028 27 C -0.156 4.156 28 H 0.088 0.912 29 H 0.094 0.906 30 H 0.103 0.897 31 H 0.052 0.948 32 H 0.056 0.944 33 H 0.033 0.967 34 H 0.034 0.966 35 H 0.264 0.736 36 H 0.062 0.938 37 H 0.055 0.945 38 H 0.362 0.638 39 H 0.077 0.923 40 H 0.066 0.934 41 H 0.140 0.860 42 H 0.134 0.866 43 H 0.138 0.862 44 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.722 1.653 -7.686 14.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.146 4.146 3 C -0.045 4.045 4 N -0.250 5.250 5 C 0.061 3.939 6 C -0.592 4.592 7 H 0.073 0.927 8 C -0.135 4.135 9 N -0.524 5.524 10 Si 0.713 3.287 11 H -0.203 1.203 12 H -0.211 1.211 13 H -0.203 1.203 14 C -0.097 4.097 15 C 0.059 3.941 16 H 0.133 0.867 17 O -0.342 6.342 18 C -0.050 4.050 19 O -0.204 6.204 20 C 0.123 3.877 21 C -0.235 4.235 22 C -0.046 4.046 23 C -0.088 4.088 24 C -0.051 4.051 25 N -0.108 5.108 26 C -0.049 4.049 27 C -0.175 4.175 28 H 0.106 0.894 29 H 0.112 0.888 30 H 0.121 0.879 31 H 0.070 0.930 32 H 0.074 0.926 33 H 0.051 0.949 34 H 0.052 0.948 35 H 0.073 0.927 36 H 0.080 0.920 37 H 0.074 0.926 38 H 0.208 0.792 39 H 0.095 0.905 40 H 0.084 0.916 41 H 0.157 0.843 42 H 0.151 0.849 43 H 0.156 0.844 44 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 14.024 2.014 -6.755 15.695 hybrid contribution -1.452 1.851 -0.560 2.418 sum 12.572 3.865 -7.315 15.050 Atomic orbital electron populations 1.23713 0.96129 1.01114 1.02538 1.22778 0.95369 0.98401 0.98004 1.21125 0.94989 0.95254 0.93111 1.62371 1.14947 1.43561 1.04113 1.19792 0.92970 0.95718 0.85396 1.21630 1.32610 1.06539 0.98406 0.92717 1.24929 0.96227 0.96826 0.95511 1.69927 1.42175 1.37450 1.02820 0.86771 0.80324 0.84237 0.77357 1.20288 1.21134 1.20317 1.22486 0.93320 0.96530 0.97348 1.21950 0.88793 0.81488 1.01855 0.86671 1.86693 1.80965 1.34316 1.32206 1.23847 0.87114 1.01862 0.92210 1.86199 1.29193 1.46406 1.58614 1.19445 0.88008 0.87770 0.92481 1.21260 1.01971 0.96784 1.03460 1.20928 0.90858 0.97489 0.95327 1.15885 0.93263 0.95672 1.03973 1.25684 0.92959 0.93049 0.93442 1.81256 1.10648 1.10248 1.08669 1.20948 0.97535 0.91045 0.95369 1.20410 0.92999 1.02205 1.01875 0.89359 0.88798 0.87939 0.93034 0.92566 0.94928 0.94799 0.92651 0.91968 0.92627 0.79247 0.90499 0.91596 0.84270 0.84853 0.84416 0.83882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.27 14.32 29.01 0.42 -2.85 16 2 C -0.13 -2.18 8.91 -36.03 -0.32 -2.50 16 3 C 0.08 1.47 5.25 -4.98 -0.03 1.45 16 4 N -0.53 -10.17 4.47 -237.51 -1.06 -11.23 16 5 C 0.19 4.49 4.88 -4.97 -0.02 4.47 16 6 C -0.55 -14.03 7.18 -34.44 -0.25 -14.28 16 7 H 0.05 1.36 6.07 -52.49 -0.32 1.04 16 8 C 0.07 1.82 5.46 -17.82 -0.10 1.73 16 9 N -0.89 -25.05 13.29 55.43 0.74 -24.31 16 10 Si 0.89 20.36 29.54 -169.99 -5.02 15.34 16 11 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 12 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 13 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 14 C 0.03 0.52 4.50 -3.82 -0.02 0.50 16 15 C 0.12 1.79 3.31 -26.73 -0.09 1.70 16 16 H 0.12 2.15 6.88 -51.94 -0.36 1.79 16 17 O -0.54 -8.14 13.18 -40.08 -0.53 -8.67 16 18 C 0.03 0.29 4.37 37.16 0.16 0.46 16 19 O -0.29 -3.72 10.09 -23.80 -0.24 -3.96 16 20 C 0.17 1.80 6.69 -39.04 -0.26 1.54 16 21 C -0.22 -1.90 9.01 -39.50 -0.36 -2.26 16 22 C -0.03 -0.20 9.75 -39.20 -0.38 -0.59 16 23 C -0.08 -0.73 5.74 -106.84 -0.61 -1.34 16 24 C 0.26 2.70 15.33 -22.47 -0.34 2.36 16 25 N -0.43 -5.42 18.54 41.84 0.78 -4.65 16 26 C -0.03 -0.22 9.75 -39.20 -0.38 -0.61 16 27 C -0.16 -1.42 9.97 -39.50 -0.39 -1.81 16 28 H 0.09 1.29 8.06 -52.49 -0.42 0.86 16 29 H 0.09 1.62 7.84 -52.49 -0.41 1.21 16 30 H 0.10 1.67 8.06 -52.49 -0.42 1.25 16 31 H 0.05 1.02 5.82 -51.93 -0.30 0.72 16 32 H 0.06 0.85 7.68 -51.93 -0.40 0.46 16 33 H 0.03 0.87 7.46 -51.93 -0.39 0.48 16 34 H 0.03 0.89 6.81 -51.93 -0.35 0.54 16 35 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 36 H 0.06 1.11 6.42 -51.93 -0.33 0.78 16 37 H 0.06 0.73 7.64 -51.93 -0.40 0.33 16 38 H 0.36 3.94 9.04 45.56 0.41 4.35 16 39 H 0.08 0.85 7.66 -51.93 -0.40 0.45 16 40 H 0.07 0.59 7.64 -51.93 -0.40 0.19 16 41 H 0.14 1.04 6.28 -52.48 -0.33 0.71 16 42 H 0.13 0.82 8.06 -52.49 -0.42 0.39 16 43 H 0.14 0.79 8.06 -52.48 -0.42 0.36 16 44 H 0.14 1.17 8.06 -52.48 -0.42 0.74 16 LS Contribution 376.69 15.07 5.68 5.68 Total: -1.00 -30.54 376.69 -7.86 -38.40 By element: Atomic # 1 Polarization: 10.66 SS G_CDS: -5.22 Total: 5.44 kcal Atomic # 6 Polarization: -9.06 SS G_CDS: -2.98 Total: -12.04 kcal Atomic # 7 Polarization: -40.64 SS G_CDS: 0.45 Total: -40.19 kcal Atomic # 8 Polarization: -11.86 SS G_CDS: -0.77 Total: -12.63 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.34 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -30.54 -7.86 -38.40 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292252678.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.943 kcal (2) G-P(sol) polarization free energy of solvation -30.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds