Wall clock time and date at job start Tue Mar 31 2020 11:42:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47243 * 2 1 4 4 N 1.46498 * 109.47334 * 174.62470 * 3 2 1 5 5 C 1.36868 * 120.00195 * 79.74985 * 4 3 2 6 6 H 1.07999 * 120.00407 * 214.12642 * 5 4 3 7 7 C 1.39052 * 119.99946 * 34.13513 * 5 4 3 8 8 N 1.31360 * 120.00063 * 27.56403 * 7 5 4 9 9 Si 1.86800 * 120.00043 * 207.56364 * 7 5 4 10 10 H 1.48508 * 109.46801 * 59.99885 * 9 7 5 11 11 H 1.48496 * 109.47579 * 179.97438 * 9 7 5 12 12 H 1.48494 * 109.47109 * 300.00092 * 9 7 5 13 13 C 1.34776 * 119.99855 * 259.74642 * 4 3 2 14 14 O 1.21592 * 119.99889 * 172.99634 * 13 4 3 15 15 C 1.47740 * 120.00159 * 352.73059 * 13 4 3 16 16 C 1.39687 * 119.97725 * 39.56485 * 15 13 4 17 17 C 1.38070 * 119.68304 * 179.97438 * 16 15 13 18 18 C 1.37878 * 120.11559 * 0.02799 * 17 16 15 19 19 C 1.39045 * 121.04835 * 359.97438 * 18 17 16 20 20 C 1.39107 * 119.09923 * 359.74541 * 19 18 17 21 21 N 1.39588 * 110.20855 * 180.02562 * 19 18 17 22 22 C 1.34352 * 112.24897 * 359.97438 * 21 19 18 23 23 O 1.21283 * 126.42095 * 179.97438 * 22 21 19 24 24 C 1.51187 * 132.65171 * 179.97438 * 18 17 16 25 25 C 1.53001 * 110.50767 * 298.65350 * 24 18 17 26 26 C 1.52996 * 110.50444 * 61.21225 * 24 18 17 27 27 H 1.08994 * 109.46726 * 299.99385 * 1 2 3 28 28 H 1.08992 * 109.47114 * 59.99960 * 1 2 3 29 29 H 1.09006 * 109.47083 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.47241 * 240.00304 * 2 1 3 31 31 H 1.09001 * 109.47304 * 120.00621 * 2 1 3 32 32 H 1.09002 * 109.46973 * 54.61944 * 3 2 1 33 33 H 1.09008 * 109.47298 * 294.62361 * 3 2 1 34 34 H 0.97003 * 119.99672 * 180.02562 * 8 7 5 35 35 H 1.07997 * 120.16177 * 359.96142 * 16 15 13 36 36 H 1.07999 * 119.94486 * 180.02562 * 17 16 15 37 37 H 1.08005 * 119.99505 * 180.24930 * 20 19 18 38 38 H 0.97001 * 123.87364 * 180.02562 * 21 19 18 39 39 H 1.08998 * 109.47178 * 59.99876 * 25 24 18 40 40 H 1.08995 * 109.46885 * 180.02562 * 25 24 18 41 41 H 1.09004 * 109.47081 * 299.99728 * 25 24 18 42 42 H 1.09006 * 109.47256 * 60.00013 * 26 24 18 43 43 H 1.09001 * 109.47514 * 179.97438 * 26 24 18 44 44 H 1.08994 * 109.47626 * 299.99952 * 26 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.4993 1.4445 0.1294 5 6 4.2837 1.1982 -0.9648 6 1 5.2186 0.6695 -0.8512 7 6 3.8771 1.6288 -2.2229 8 7 3.0968 2.6794 -2.3371 9 14 4.4404 0.7134 -3.7507 10 1 3.9726 -0.6945 -3.6847 11 1 3.8727 1.3671 -4.9571 12 1 5.9233 0.7393 -3.8246 13 6 4.0693 1.6890 1.3259 14 8 5.2712 1.5659 1.4633 15 6 3.2347 2.1122 2.4692 16 6 1.9792 1.5333 2.6688 17 6 1.2045 1.9330 3.7395 18 6 1.6685 2.8993 4.6067 19 6 2.9154 3.4871 4.4246 20 6 3.7029 3.0844 3.3510 21 7 3.1555 4.4288 5.4267 22 6 2.1332 4.5209 6.2936 23 8 2.0707 5.2539 7.2579 24 6 1.0747 3.5376 5.8418 25 6 -0.2239 4.2690 5.4957 26 6 0.8230 2.4834 6.9216 27 1 -0.3632 0.5137 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 1.6001 1.9833 0.8379 33 1 1.7574 1.9278 -0.9343 34 1 2.8128 2.9795 -3.2147 35 1 1.6160 0.7770 1.9888 36 1 0.2333 1.4880 3.8981 37 1 4.6755 3.5285 3.1983 38 1 3.9669 4.9566 5.4894 39 1 -0.9417 3.5596 5.0839 40 1 -0.6366 4.7225 6.3968 41 1 -0.0181 5.0462 4.7597 42 1 1.7652 2.0046 7.1887 43 1 0.3960 2.9611 7.8034 44 1 0.1291 1.7333 6.5425 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000293694717.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:42:57 Heat of formation + Delta-G solvation = -43.170355 kcal Electronic energy + Delta-G solvation = -26983.292590 eV Core-core repulsion = 23286.386431 eV Total energy + Delta-G solvation = -3696.906160 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.85113 -40.95378 -39.11128 -37.32279 -36.69423 -35.65955 -34.52615 -33.12225 -31.39407 -30.44059 -28.27477 -27.62116 -26.81118 -25.85825 -23.71921 -23.45175 -22.37111 -21.06041 -20.50992 -19.11873 -18.72479 -18.37740 -17.31120 -17.11924 -16.71854 -16.41526 -16.03055 -15.87115 -15.62705 -15.34313 -15.06154 -14.79498 -14.66665 -14.25967 -13.95348 -13.77765 -13.66817 -13.41334 -13.32233 -13.17229 -12.98660 -12.95890 -12.71631 -12.38888 -12.29710 -12.20689 -12.10880 -11.98664 -11.82036 -11.79882 -11.43531 -11.08394 -10.92792 -10.49476 -9.88975 -9.48326 -9.07469 -8.40136 -6.04558 -0.09191 0.19520 1.30183 1.38979 1.42694 1.52086 1.82542 2.05267 2.28085 2.70821 2.90591 3.02591 3.09685 3.20919 3.77916 3.85124 4.00084 4.05202 4.16273 4.24174 4.31457 4.36981 4.53026 4.60935 4.73043 4.75563 4.79205 4.82252 4.86367 4.93941 5.01753 5.04547 5.18684 5.19983 5.28677 5.29369 5.34670 5.39829 5.44340 5.48048 5.53870 5.66542 5.68546 5.92341 6.16345 6.49379 6.83636 7.11887 7.39630 7.99898 8.60161 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.021367 B = 0.003721 C = 0.003420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.120757 B = 7523.968210 C = 8184.982362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.133 4.133 3 C 0.078 3.922 4 N -0.430 5.430 5 C -0.353 4.353 6 H 0.065 0.935 7 C 0.017 3.983 8 N -0.871 5.871 9 Si 0.975 3.025 10 H -0.261 1.261 11 H -0.270 1.270 12 H -0.278 1.278 13 C 0.471 3.529 14 O -0.634 6.634 15 C -0.087 4.087 16 C -0.128 4.128 17 C -0.050 4.050 18 C -0.117 4.117 19 C 0.128 3.872 20 C -0.108 4.108 21 N -0.655 5.655 22 C 0.530 3.470 23 O -0.535 6.535 24 C -0.047 4.047 25 C -0.124 4.124 26 C -0.124 4.124 27 H 0.077 0.923 28 H 0.050 0.950 29 H 0.072 0.928 30 H 0.046 0.954 31 H 0.061 0.939 32 H 0.092 0.908 33 H 0.083 0.917 34 H 0.277 0.723 35 H 0.160 0.840 36 H 0.180 0.820 37 H 0.112 0.888 38 H 0.417 0.583 39 H 0.103 0.897 40 H 0.075 0.925 41 H 0.050 0.950 42 H 0.050 0.950 43 H 0.075 0.925 44 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.816 -1.971 11.259 17.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.171 4.171 3 C -0.045 4.045 4 N -0.145 5.145 5 C -0.480 4.480 6 H 0.083 0.917 7 C -0.188 4.188 8 N -0.507 5.507 9 Si 0.798 3.202 10 H -0.186 1.186 11 H -0.194 1.194 12 H -0.203 1.203 13 C 0.261 3.739 14 O -0.522 6.522 15 C -0.091 4.091 16 C -0.147 4.147 17 C -0.068 4.068 18 C -0.120 4.120 19 C 0.031 3.969 20 C -0.130 4.130 21 N -0.298 5.298 22 C 0.319 3.681 23 O -0.411 6.411 24 C -0.050 4.050 25 C -0.182 4.182 26 C -0.181 4.181 27 H 0.096 0.904 28 H 0.070 0.930 29 H 0.091 0.909 30 H 0.064 0.936 31 H 0.080 0.920 32 H 0.110 0.890 33 H 0.101 0.899 34 H 0.087 0.913 35 H 0.177 0.823 36 H 0.197 0.803 37 H 0.130 0.870 38 H 0.256 0.744 39 H 0.121 0.879 40 H 0.094 0.906 41 H 0.069 0.931 42 H 0.069 0.931 43 H 0.094 0.906 44 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -13.485 -1.514 11.703 17.919 hybrid contribution 1.961 0.390 -1.146 2.305 sum -11.524 -1.124 10.557 15.669 Atomic orbital electron populations 1.21698 0.92495 1.02838 1.02778 1.21846 0.97821 0.96097 1.01352 1.22350 0.79605 0.97859 1.04644 1.43658 1.06578 1.58107 1.06203 1.19293 1.06186 1.36828 0.85717 0.91720 1.26010 0.96973 0.94479 1.01367 1.70017 1.34999 1.19380 1.26297 0.85295 0.78539 0.79335 0.77059 1.18601 1.19443 1.20346 1.18987 0.87227 0.82376 0.85261 1.90559 1.17380 1.59090 1.85203 1.19737 0.96209 0.98224 0.94941 1.22042 0.92317 1.01352 0.98956 1.20513 1.00942 0.94408 0.90943 1.20150 0.93905 0.99582 0.98356 1.17867 0.95971 0.92557 0.90483 1.20134 0.99673 0.99314 0.93911 1.43735 1.21268 1.38824 1.25966 1.21023 0.83672 0.82650 0.80726 1.90751 1.80029 1.42615 1.27742 1.20212 0.95743 0.95185 0.93906 1.21716 0.93267 1.00628 1.02557 1.21708 1.02973 0.97029 0.96377 0.90431 0.93049 0.90937 0.93553 0.92013 0.88989 0.89884 0.91297 0.82336 0.80280 0.87012 0.74439 0.87877 0.90558 0.93129 0.93058 0.90563 0.87908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.17 9.83 71.98 0.71 -2.47 16 2 C -0.13 -4.34 5.19 30.59 0.16 -4.18 16 3 C 0.08 3.15 4.50 86.38 0.39 3.54 16 4 N -0.43 -21.79 2.57 -638.93 -1.64 -23.43 16 5 C -0.35 -19.75 8.86 84.10 0.75 -19.00 16 6 H 0.06 3.93 7.69 -2.91 -0.02 3.91 16 7 C 0.02 0.88 4.92 84.96 0.42 1.29 16 8 N -0.87 -45.46 11.52 21.68 0.25 -45.21 16 9 Si 0.97 40.82 29.63 68.60 2.03 42.85 16 10 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 11 H -0.27 -10.63 7.11 99.48 0.71 -9.92 16 12 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 13 C 0.47 24.05 7.29 86.76 0.63 24.68 16 14 O -0.63 -37.86 16.70 -4.00 -0.07 -37.93 16 15 C -0.09 -3.41 5.34 -20.15 -0.11 -3.52 16 16 C -0.13 -3.70 7.36 22.58 0.17 -3.54 16 17 C -0.05 -1.04 10.02 22.14 0.22 -0.82 16 18 C -0.12 -2.68 5.00 -19.60 -0.10 -2.78 16 19 C 0.13 3.65 7.10 38.31 0.27 3.92 16 20 C -0.11 -3.89 9.65 22.75 0.22 -3.67 16 21 N -0.66 -16.90 5.88 -303.30 -1.78 -18.69 16 22 C 0.53 13.70 7.37 87.94 0.65 14.35 16 23 O -0.53 -16.52 18.03 -3.04 -0.05 -16.57 16 24 C -0.05 -0.92 1.01 -53.31 -0.05 -0.98 16 25 C -0.12 -1.90 8.64 71.98 0.62 -1.28 16 26 C -0.12 -1.85 8.64 71.98 0.62 -1.23 16 27 H 0.08 1.37 7.86 -2.39 -0.02 1.35 16 28 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 29 H 0.07 1.35 8.14 -2.38 -0.02 1.33 16 30 H 0.05 1.72 8.14 -2.38 -0.02 1.70 16 31 H 0.06 1.93 6.85 -2.39 -0.02 1.91 16 32 H 0.09 3.27 4.42 -2.39 -0.01 3.26 16 33 H 0.08 3.79 5.56 -2.38 -0.01 3.78 16 34 H 0.28 13.41 8.31 -92.71 -0.77 12.64 16 35 H 0.16 4.35 3.12 -2.91 -0.01 4.34 16 36 H 0.18 1.99 8.06 -2.91 -0.02 1.97 16 37 H 0.11 4.31 8.04 -2.91 -0.02 4.29 16 38 H 0.42 9.57 8.96 -92.71 -0.83 8.73 16 39 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 40 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 41 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 42 H 0.05 0.88 8.14 -2.38 -0.02 0.86 16 43 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 44 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 Total: -1.00 -73.82 358.51 4.51 -69.32 By element: Atomic # 1 Polarization: 25.12 SS G_CDS: 0.21 Total: 25.33 kcal Atomic # 6 Polarization: -1.24 SS G_CDS: 5.56 Total: 4.32 kcal Atomic # 7 Polarization: -84.15 SS G_CDS: -3.17 Total: -87.33 kcal Atomic # 8 Polarization: -54.38 SS G_CDS: -0.12 Total: -54.50 kcal Atomic # 14 Polarization: 40.82 SS G_CDS: 2.03 Total: 42.85 kcal Total: -73.82 4.51 -69.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293694717.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.146 kcal (2) G-P(sol) polarization free energy of solvation -73.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds