Wall clock time and date at job start Tue Mar 31 2020 11:43:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47344 * 2 1 4 4 N 1.46499 * 109.47098 * 180.02562 * 3 2 1 5 5 C 1.36587 * 119.99394 * 269.99427 * 4 3 2 6 6 H 1.08003 * 119.99480 * 144.28469 * 5 4 3 7 7 C 1.39227 * 120.00564 * 324.28000 * 5 4 3 8 8 N 1.31254 * 119.99911 * 157.59910 * 7 5 4 9 9 Si 1.86796 * 119.99587 * 337.59909 * 7 5 4 10 10 H 1.48503 * 109.47011 * 95.42865 * 9 7 5 11 11 H 1.48502 * 109.47190 * 215.42253 * 9 7 5 12 12 H 1.48498 * 109.47588 * 335.42811 * 9 7 5 13 13 C 1.34768 * 120.00457 * 89.99712 * 4 3 2 14 14 O 1.21746 * 120.00267 * 354.96296 * 13 4 3 15 15 C 1.46360 * 120.00324 * 174.95582 * 13 4 3 16 16 C 1.34954 * 120.00373 * 184.88652 * 15 13 4 17 17 C 1.47138 * 120.00307 * 174.49906 * 16 15 13 18 18 C 1.39954 * 120.02531 * 4.87078 * 17 16 15 19 19 C 1.37614 * 119.96913 * 179.73760 * 18 17 16 20 20 C 1.39720 * 120.02741 * 0.53822 * 19 18 17 21 21 C 1.47816 * 119.97225 * 179.69532 * 20 19 18 22 22 O 1.21559 * 120.00300 * 180.02562 * 21 20 19 23 23 N 1.34778 * 120.00169 * 0.02562 * 21 20 19 24 24 C 1.46500 * 120.00339 * 179.97438 * 23 21 20 25 25 C 1.39728 * 120.05525 * 359.71547 * 20 19 18 26 26 C 1.37600 * 120.02869 * 0.02668 * 25 20 19 27 27 H 1.08996 * 109.47291 * 300.00169 * 1 2 3 28 28 H 1.09003 * 109.46825 * 60.00193 * 1 2 3 29 29 H 1.09002 * 109.47240 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47193 * 239.99458 * 2 1 3 31 31 H 1.09003 * 109.46825 * 119.99807 * 2 1 3 32 32 H 1.08996 * 109.47065 * 59.99692 * 3 2 1 33 33 H 1.09003 * 109.47002 * 299.99698 * 3 2 1 34 34 H 0.97004 * 119.99787 * 180.02562 * 8 7 5 35 35 H 1.07998 * 119.99590 * 4.60896 * 15 13 4 36 36 H 1.08002 * 119.99957 * 354.49949 * 16 15 13 37 37 H 1.07997 * 120.01865 * 359.97438 * 18 17 16 38 38 H 1.07995 * 119.98307 * 180.23500 * 19 18 17 39 39 H 0.97001 * 119.99354 * 0.02562 * 23 21 20 40 40 H 1.08999 * 109.47353 * 180.02562 * 24 23 21 41 41 H 1.09004 * 109.46796 * 300.00522 * 24 23 21 42 42 H 1.09007 * 109.46648 * 59.99786 * 24 23 21 43 43 H 1.08001 * 119.98419 * 179.97438 * 25 20 19 44 44 H 1.08002 * 120.01561 * 180.02562 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.1883 1.4423 1.1820 6 1 5.1160 0.8962 1.2696 7 6 3.6891 2.1462 2.2746 8 7 4.0595 1.8194 3.4907 9 14 2.4922 3.5556 2.0098 10 1 1.1008 3.0576 2.1564 11 1 2.7466 4.6170 3.0168 12 1 2.6773 4.1127 0.6458 13 6 4.1784 1.4425 -1.1680 14 8 3.5729 1.3500 -2.2201 15 6 5.6378 1.5539 -1.1710 16 6 6.3046 1.6533 -2.3401 17 6 7.7573 1.8867 -2.3410 18 6 8.4646 1.9040 -1.1334 19 6 9.8241 2.1171 -1.1360 20 6 10.4966 2.3271 -2.3426 21 6 11.9559 2.5625 -2.3433 22 8 12.5415 2.7458 -3.3927 23 7 12.6373 2.5739 -1.1806 24 6 14.0837 2.8067 -1.1814 25 6 9.7908 2.3153 -3.5484 26 6 8.4322 2.0973 -3.5489 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.6767 1.9563 0.8899 33 1 1.6767 1.9563 -0.8900 34 1 3.7114 2.3095 4.2519 35 1 6.1807 1.5610 -0.2374 36 1 5.7719 1.5616 -3.2751 37 1 7.9443 1.7465 -0.2002 38 1 10.3707 2.1267 -0.2046 39 1 12.1701 2.4273 -0.3433 40 1 14.4567 2.7797 -0.1575 41 1 14.5762 2.0309 -1.7677 42 1 14.2945 3.7822 -1.6197 43 1 10.3117 2.4782 -4.4803 44 1 7.8869 2.0878 -4.4811 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299078990.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:43:40 Heat of formation + Delta-G solvation = -24.091270 kcal Electronic energy + Delta-G solvation = -25163.969890 eV Core-core repulsion = 21467.891062 eV Total energy + Delta-G solvation = -3696.078828 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.22899 -39.07886 -38.35258 -35.54050 -34.87441 -33.67768 -33.02971 -31.81432 -31.12411 -29.80534 -27.24137 -26.18520 -25.14098 -23.77584 -22.66595 -21.63016 -20.90973 -20.07209 -18.73523 -18.39569 -17.07736 -16.67714 -16.11543 -15.69239 -15.38316 -15.04417 -14.96773 -14.59742 -14.28565 -14.07235 -13.98077 -13.49671 -13.35101 -13.29242 -13.13657 -12.67883 -12.58147 -12.53789 -12.46477 -11.99415 -11.74933 -11.59045 -11.45753 -11.03500 -10.92362 -10.82779 -10.51052 -10.18108 -10.11927 -9.98859 -9.85278 -9.38456 -9.30449 -9.03032 -8.74936 -8.09948 -7.86705 -6.68923 -4.19437 0.47367 1.39916 2.03837 2.91532 2.98783 3.00828 3.12128 3.18621 3.87632 3.96340 4.13546 4.33786 4.55940 4.71503 4.79247 4.92160 4.97079 5.10943 5.23258 5.31946 5.41593 5.50647 5.52579 5.58499 5.69885 5.76257 5.81386 5.95261 6.04724 6.08433 6.12597 6.25682 6.29060 6.31074 6.31499 6.38263 6.41422 6.69994 6.83274 6.84220 6.92110 6.99893 7.19764 7.25008 7.87189 8.02380 8.07316 8.77127 9.19402 9.55789 10.40555 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.018262 B = 0.002783 C = 0.002524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1532.910468 B =10058.798387 C =11091.797771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.131 4.131 3 C 0.101 3.899 4 N -0.444 5.444 5 C -0.346 4.346 6 H 0.107 0.893 7 C 0.070 3.930 8 N -0.846 5.846 9 Si 0.877 3.123 10 H -0.271 1.271 11 H -0.286 1.286 12 H -0.260 1.260 13 C 0.488 3.512 14 O -0.603 6.603 15 C -0.122 4.122 16 C -0.105 4.105 17 C -0.010 4.010 18 C -0.122 4.122 19 C -0.081 4.081 20 C -0.153 4.153 21 C 0.561 3.439 22 O -0.542 6.542 23 N -0.735 5.735 24 C 0.088 3.912 25 C -0.058 4.058 26 C -0.121 4.121 27 H 0.051 0.949 28 H 0.051 0.949 29 H 0.052 0.948 30 H 0.063 0.937 31 H 0.070 0.930 32 H 0.064 0.936 33 H 0.070 0.930 34 H 0.278 0.722 35 H 0.135 0.865 36 H 0.131 0.869 37 H 0.139 0.861 38 H 0.125 0.875 39 H 0.403 0.597 40 H 0.076 0.924 41 H 0.060 0.940 42 H 0.060 0.940 43 H 0.134 0.866 44 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.096 0.653 -4.018 10.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.169 4.169 3 C -0.022 4.022 4 N -0.161 5.161 5 C -0.473 4.473 6 H 0.125 0.875 7 C -0.140 4.140 8 N -0.480 5.480 9 Si 0.704 3.296 10 H -0.198 1.198 11 H -0.213 1.213 12 H -0.184 1.184 13 C 0.280 3.720 14 O -0.491 6.491 15 C -0.143 4.143 16 C -0.126 4.126 17 C -0.011 4.011 18 C -0.140 4.140 19 C -0.100 4.100 20 C -0.156 4.156 21 C 0.350 3.650 22 O -0.421 6.421 23 N -0.387 5.387 24 C -0.056 4.056 25 C -0.077 4.077 26 C -0.139 4.139 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.071 0.929 30 H 0.082 0.918 31 H 0.088 0.912 32 H 0.082 0.918 33 H 0.088 0.912 34 H 0.089 0.911 35 H 0.152 0.848 36 H 0.149 0.851 37 H 0.157 0.843 38 H 0.143 0.857 39 H 0.238 0.762 40 H 0.094 0.906 41 H 0.078 0.922 42 H 0.078 0.922 43 H 0.152 0.848 44 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 10.218 0.776 -4.992 11.398 hybrid contribution -0.767 0.670 0.834 1.316 sum 9.450 1.446 -4.158 10.426 Atomic orbital electron populations 1.21711 0.96283 1.01177 1.01378 1.21744 0.94842 0.97622 1.02701 1.21708 0.82274 0.97090 1.01128 1.43642 1.04311 1.62337 1.05786 1.19104 1.09653 1.32168 0.86380 0.87505 1.25396 0.97035 0.96898 0.94659 1.69691 1.42439 1.37625 0.98201 0.86944 0.80740 0.82598 0.79324 1.19839 1.21278 1.18447 1.18250 0.87918 0.82292 0.83506 1.90670 1.70353 1.56644 1.31443 1.23384 0.94753 0.97423 0.98704 1.22135 0.90960 1.00251 0.99251 1.19364 0.93456 0.95193 0.93071 1.21488 0.93752 1.00230 0.98541 1.21146 0.94670 0.97618 0.96553 1.19852 0.92560 1.08409 0.94816 1.18390 0.87094 0.76031 0.83498 1.90752 1.70461 1.49511 1.31331 1.45736 1.09493 1.74145 1.09320 1.21541 0.79936 1.01817 1.02280 1.21110 0.93668 0.95470 0.97420 1.21318 0.93873 1.00936 0.97814 0.93027 0.92979 0.92910 0.91809 0.91166 0.91778 0.91186 0.91123 0.84753 0.85102 0.84293 0.85745 0.76191 0.90554 0.92174 0.92163 0.84818 0.84967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.29 9.91 37.16 0.37 -1.92 16 2 C -0.13 -2.49 6.26 -26.73 -0.17 -2.66 16 3 C 0.10 2.18 4.18 -4.04 -0.02 2.16 16 4 N -0.44 -10.34 2.20 -116.43 -0.26 -10.60 16 5 C -0.35 -8.45 8.88 -15.07 -0.13 -8.58 16 6 H 0.11 2.67 6.97 -52.48 -0.37 2.30 16 7 C 0.07 1.72 5.32 -17.43 -0.09 1.63 16 8 N -0.85 -21.74 13.95 55.51 0.77 -20.97 16 9 Si 0.88 19.48 24.96 -169.99 -4.24 15.24 16 10 H -0.27 -5.80 6.67 56.52 0.38 -5.42 16 11 H -0.29 -6.30 7.11 56.52 0.40 -5.90 16 12 H -0.26 -5.94 7.11 56.52 0.40 -5.54 16 13 C 0.49 11.15 7.55 -13.00 -0.10 11.05 16 14 O -0.60 -14.84 15.88 5.15 0.08 -14.76 16 15 C -0.12 -2.35 8.67 -37.48 -0.33 -2.68 16 16 C -0.11 -1.76 9.45 -37.14 -0.35 -2.12 16 17 C -0.01 -0.15 5.87 -105.00 -0.62 -0.77 16 18 C -0.12 -1.63 9.40 -39.17 -0.37 -2.00 16 19 C -0.08 -0.93 9.52 -39.26 -0.37 -1.30 16 20 C -0.15 -1.92 5.88 -104.87 -0.62 -2.54 16 21 C 0.56 7.17 7.77 -12.34 -0.10 7.08 16 22 O -0.54 -8.66 16.33 5.31 0.09 -8.58 16 23 N -0.73 -6.77 5.66 -68.05 -0.39 -7.16 16 24 C 0.09 0.65 10.70 59.85 0.64 1.30 16 25 C -0.06 -0.74 9.57 -39.26 -0.38 -1.12 16 26 C -0.12 -1.56 9.77 -39.17 -0.38 -1.94 16 27 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 31 H 0.07 1.40 8.14 -51.93 -0.42 0.97 16 32 H 0.06 1.40 3.02 -51.93 -0.16 1.25 16 33 H 0.07 1.51 7.49 -51.93 -0.39 1.12 16 34 H 0.28 6.68 8.31 -40.82 -0.34 6.35 16 35 H 0.13 2.47 4.57 -52.49 -0.24 2.23 16 36 H 0.13 2.22 7.53 -52.49 -0.40 1.83 16 37 H 0.14 1.82 6.17 -52.49 -0.32 1.50 16 38 H 0.12 1.02 6.38 -52.49 -0.33 0.69 16 39 H 0.40 2.71 6.84 -40.82 -0.28 2.43 16 40 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 41 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.13 1.62 7.63 -52.49 -0.40 1.22 16 44 H 0.13 1.46 8.06 -52.49 -0.42 1.03 16 LS Contribution 366.69 15.07 5.53 5.53 Total: -1.00 -30.52 366.69 -7.27 -37.79 By element: Atomic # 1 Polarization: 13.76 SS G_CDS: -5.85 Total: 7.91 kcal Atomic # 6 Polarization: -1.39 SS G_CDS: -3.01 Total: -4.40 kcal Atomic # 7 Polarization: -38.86 SS G_CDS: 0.13 Total: -38.73 kcal Atomic # 8 Polarization: -23.50 SS G_CDS: 0.17 Total: -23.34 kcal Atomic # 14 Polarization: 19.48 SS G_CDS: -4.24 Total: 15.24 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -30.52 -7.27 -37.79 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299078990.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.698 kcal (2) G-P(sol) polarization free energy of solvation -30.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds