Wall clock time and date at job start Tue Mar 31 2020 11:43:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47344 * 2 1 4 4 N 1.46499 * 109.47098 * 180.02562 * 3 2 1 5 5 C 1.36587 * 119.99394 * 269.99427 * 4 3 2 6 6 H 1.08003 * 119.99480 * 144.28469 * 5 4 3 7 7 C 1.39227 * 120.00564 * 324.28000 * 5 4 3 8 8 N 1.31254 * 119.99911 * 157.59910 * 7 5 4 9 9 Si 1.86796 * 119.99587 * 337.59909 * 7 5 4 10 10 H 1.48503 * 109.47011 * 95.42865 * 9 7 5 11 11 H 1.48502 * 109.47190 * 215.42253 * 9 7 5 12 12 H 1.48498 * 109.47588 * 335.42811 * 9 7 5 13 13 C 1.34768 * 120.00457 * 89.99712 * 4 3 2 14 14 O 1.21746 * 120.00267 * 354.96296 * 13 4 3 15 15 C 1.46360 * 120.00324 * 174.95582 * 13 4 3 16 16 C 1.34954 * 120.00373 * 184.88652 * 15 13 4 17 17 C 1.47138 * 120.00307 * 174.49906 * 16 15 13 18 18 C 1.39954 * 120.02531 * 4.87078 * 17 16 15 19 19 C 1.37614 * 119.96913 * 179.73760 * 18 17 16 20 20 C 1.39720 * 120.02741 * 0.53822 * 19 18 17 21 21 C 1.47816 * 119.97225 * 179.69532 * 20 19 18 22 22 O 1.21559 * 120.00300 * 180.02562 * 21 20 19 23 23 N 1.34778 * 120.00169 * 0.02562 * 21 20 19 24 24 C 1.46500 * 120.00339 * 179.97438 * 23 21 20 25 25 C 1.39728 * 120.05525 * 359.71547 * 20 19 18 26 26 C 1.37600 * 120.02869 * 0.02668 * 25 20 19 27 27 H 1.08996 * 109.47291 * 300.00169 * 1 2 3 28 28 H 1.09003 * 109.46825 * 60.00193 * 1 2 3 29 29 H 1.09002 * 109.47240 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47193 * 239.99458 * 2 1 3 31 31 H 1.09003 * 109.46825 * 119.99807 * 2 1 3 32 32 H 1.08996 * 109.47065 * 59.99692 * 3 2 1 33 33 H 1.09003 * 109.47002 * 299.99698 * 3 2 1 34 34 H 0.97004 * 119.99787 * 180.02562 * 8 7 5 35 35 H 1.07998 * 119.99590 * 4.60896 * 15 13 4 36 36 H 1.08002 * 119.99957 * 354.49949 * 16 15 13 37 37 H 1.07997 * 120.01865 * 359.97438 * 18 17 16 38 38 H 1.07995 * 119.98307 * 180.23500 * 19 18 17 39 39 H 0.97001 * 119.99354 * 0.02562 * 23 21 20 40 40 H 1.08999 * 109.47353 * 180.02562 * 24 23 21 41 41 H 1.09004 * 109.46796 * 300.00522 * 24 23 21 42 42 H 1.09007 * 109.46648 * 59.99786 * 24 23 21 43 43 H 1.08001 * 119.98419 * 179.97438 * 25 20 19 44 44 H 1.08002 * 120.01561 * 180.02562 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.1883 1.4423 1.1820 6 1 5.1160 0.8962 1.2696 7 6 3.6891 2.1462 2.2746 8 7 4.0595 1.8194 3.4907 9 14 2.4922 3.5556 2.0098 10 1 1.1008 3.0576 2.1564 11 1 2.7466 4.6170 3.0168 12 1 2.6773 4.1127 0.6458 13 6 4.1784 1.4425 -1.1680 14 8 3.5729 1.3500 -2.2201 15 6 5.6378 1.5539 -1.1710 16 6 6.3046 1.6533 -2.3401 17 6 7.7573 1.8867 -2.3410 18 6 8.4646 1.9040 -1.1334 19 6 9.8241 2.1171 -1.1360 20 6 10.4966 2.3271 -2.3426 21 6 11.9559 2.5625 -2.3433 22 8 12.5415 2.7458 -3.3927 23 7 12.6373 2.5739 -1.1806 24 6 14.0837 2.8067 -1.1814 25 6 9.7908 2.3153 -3.5484 26 6 8.4322 2.0973 -3.5489 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.6767 1.9563 0.8899 33 1 1.6767 1.9563 -0.8900 34 1 3.7114 2.3095 4.2519 35 1 6.1807 1.5610 -0.2374 36 1 5.7719 1.5616 -3.2751 37 1 7.9443 1.7465 -0.2002 38 1 10.3707 2.1267 -0.2046 39 1 12.1701 2.4273 -0.3433 40 1 14.4567 2.7797 -0.1575 41 1 14.5762 2.0309 -1.7677 42 1 14.2945 3.7822 -1.6197 43 1 10.3117 2.4782 -4.4803 44 1 7.8869 2.0878 -4.4811 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299078990.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:43:40 Heat of formation + Delta-G solvation = -42.343918 kcal Electronic energy + Delta-G solvation = -25164.761385 eV Core-core repulsion = 21467.891062 eV Total energy + Delta-G solvation = -3696.870323 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.24971 -40.76865 -39.46032 -37.27601 -35.77126 -35.09398 -34.58762 -33.56230 -32.14097 -31.01068 -28.27712 -27.54071 -26.86989 -24.97718 -23.69860 -23.00769 -22.20489 -21.31562 -20.40073 -19.34230 -18.62955 -18.35189 -17.34375 -17.14961 -16.34133 -16.28973 -16.05728 -15.96631 -15.82931 -15.61985 -15.38313 -14.79437 -14.60957 -14.34526 -14.24473 -14.17897 -14.13918 -13.60909 -13.39961 -13.33282 -13.14787 -13.01888 -12.79057 -12.54824 -12.50219 -12.18462 -11.93234 -11.86909 -11.55638 -11.26743 -11.16309 -11.06674 -10.56295 -10.22070 -10.03242 -9.83602 -9.22204 -8.57040 -6.10958 -0.69574 0.38980 0.72365 1.18636 1.32209 1.40706 1.85001 2.14278 2.19747 2.37094 2.64014 2.91212 3.00603 3.60982 3.73929 3.83542 3.94113 3.95393 4.13448 4.27340 4.32077 4.36440 4.39867 4.46056 4.49854 4.54028 4.62417 4.67673 4.75946 4.92221 4.94235 5.00081 5.09579 5.14573 5.21084 5.22708 5.26443 5.28756 5.36206 5.43760 5.55751 5.66914 5.83557 6.00348 6.22224 6.45343 6.90590 7.12675 7.37226 7.75192 8.56011 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.018262 B = 0.002783 C = 0.002524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1532.910468 B =10058.798387 C =11091.797771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.124 4.124 3 C 0.094 3.906 4 N -0.458 5.458 5 C -0.346 4.346 6 H 0.092 0.908 7 C 0.039 3.961 8 N -0.880 5.880 9 Si 0.919 3.081 10 H -0.256 1.256 11 H -0.281 1.281 12 H -0.272 1.272 13 C 0.486 3.514 14 O -0.627 6.627 15 C -0.164 4.164 16 C -0.061 4.061 17 C -0.038 4.038 18 C -0.122 4.122 19 C -0.073 4.073 20 C -0.149 4.149 21 C 0.556 3.444 22 O -0.580 6.580 23 N -0.720 5.720 24 C 0.083 3.917 25 C -0.068 4.068 26 C -0.110 4.110 27 H 0.055 0.945 28 H 0.061 0.939 29 H 0.074 0.926 30 H 0.053 0.947 31 H 0.056 0.944 32 H 0.062 0.938 33 H 0.067 0.933 34 H 0.283 0.717 35 H 0.139 0.861 36 H 0.129 0.871 37 H 0.139 0.861 38 H 0.160 0.840 39 H 0.417 0.583 40 H 0.113 0.887 41 H 0.053 0.947 42 H 0.053 0.947 43 H 0.139 0.861 44 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.982 1.010 -3.998 11.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.163 4.163 3 C -0.028 4.028 4 N -0.175 5.175 5 C -0.473 4.473 6 H 0.109 0.891 7 C -0.167 4.167 8 N -0.516 5.516 9 Si 0.745 3.255 10 H -0.182 1.182 11 H -0.208 1.208 12 H -0.197 1.197 13 C 0.280 3.720 14 O -0.516 6.516 15 C -0.184 4.184 16 C -0.082 4.082 17 C -0.039 4.039 18 C -0.140 4.140 19 C -0.092 4.092 20 C -0.152 4.152 21 C 0.345 3.655 22 O -0.461 6.461 23 N -0.372 5.372 24 C -0.061 4.061 25 C -0.087 4.087 26 C -0.128 4.128 27 H 0.074 0.926 28 H 0.080 0.920 29 H 0.093 0.907 30 H 0.071 0.929 31 H 0.075 0.925 32 H 0.080 0.920 33 H 0.085 0.915 34 H 0.093 0.907 35 H 0.156 0.844 36 H 0.147 0.853 37 H 0.156 0.844 38 H 0.177 0.823 39 H 0.255 0.745 40 H 0.131 0.869 41 H 0.072 0.928 42 H 0.072 0.928 43 H 0.157 0.843 44 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 11.106 1.126 -4.926 12.202 hybrid contribution -0.776 0.549 0.663 1.159 sum 10.330 1.675 -4.264 11.300 Atomic orbital electron populations 1.21685 0.93228 1.02949 1.02076 1.21678 0.97496 0.95668 1.01457 1.21838 0.81640 0.98629 1.00726 1.43731 1.05000 1.63264 1.05554 1.18978 1.09449 1.32053 0.86861 0.89072 1.25801 0.98387 0.98154 0.94378 1.69734 1.44231 1.38838 0.98777 0.86271 0.80219 0.80588 0.78435 1.18228 1.20757 1.19713 1.18793 0.89354 0.80872 0.82981 1.90630 1.71316 1.57604 1.32068 1.23151 0.92955 1.02433 0.99875 1.22283 0.92209 0.95485 0.98180 1.19320 0.92210 0.97950 0.94370 1.21608 0.94605 0.99678 0.98140 1.21413 0.93935 0.96172 0.97636 1.20062 0.92806 1.07151 0.95184 1.18468 0.87138 0.75963 0.83944 1.90739 1.71049 1.51523 1.32817 1.45716 1.10347 1.72231 1.08868 1.21741 0.78626 1.01168 1.04528 1.21258 0.93664 0.95715 0.98014 1.21474 0.93975 0.99415 0.97938 0.92552 0.92031 0.90656 0.92866 0.92491 0.92032 0.91475 0.90714 0.84372 0.85300 0.84365 0.82253 0.74550 0.86876 0.92787 0.92844 0.84318 0.83229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.16 9.91 71.98 0.71 -3.44 16 2 C -0.12 -4.75 6.26 30.59 0.19 -4.56 16 3 C 0.09 4.09 4.18 86.38 0.36 4.45 16 4 N -0.46 -21.78 2.20 -640.47 -1.41 -23.18 16 5 C -0.35 -17.30 8.88 84.19 0.75 -16.55 16 6 H 0.09 4.74 6.97 -2.91 -0.02 4.72 16 7 C 0.04 1.96 5.32 85.02 0.45 2.42 16 8 N -0.88 -45.76 13.95 21.71 0.30 -45.46 16 9 Si 0.92 39.99 24.96 68.60 1.71 41.70 16 10 H -0.26 -10.44 6.67 99.48 0.66 -9.77 16 11 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 12 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 13 C 0.49 22.68 7.55 86.36 0.65 23.33 16 14 O -0.63 -31.26 15.88 -4.50 -0.07 -31.34 16 15 C -0.16 -6.40 8.67 23.63 0.20 -6.20 16 16 C -0.06 -2.02 9.45 23.85 0.23 -1.79 16 17 C -0.04 -1.05 5.87 -20.11 -0.12 -1.17 16 18 C -0.12 -3.07 9.40 22.54 0.21 -2.86 16 19 C -0.07 -1.48 9.52 22.48 0.21 -1.27 16 20 C -0.15 -3.42 5.88 -20.02 -0.12 -3.54 16 21 C 0.56 13.13 7.77 86.78 0.67 13.80 16 22 O -0.58 -17.91 16.33 -3.90 -0.06 -17.97 16 23 N -0.72 -11.25 5.66 -487.49 -2.76 -14.01 16 24 C 0.08 1.01 10.70 127.77 1.37 2.38 16 25 C -0.07 -1.61 9.57 22.48 0.22 -1.40 16 26 C -0.11 -2.64 9.77 22.54 0.22 -2.42 16 27 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 28 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 29 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 30 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 31 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 32 H 0.06 2.68 3.02 -2.39 -0.01 2.67 16 33 H 0.07 2.90 7.49 -2.39 -0.02 2.89 16 34 H 0.28 13.66 8.31 -92.71 -0.77 12.89 16 35 H 0.14 5.22 4.57 -2.91 -0.01 5.21 16 36 H 0.13 4.31 7.53 -2.91 -0.02 4.29 16 37 H 0.14 3.51 6.17 -2.91 -0.02 3.50 16 38 H 0.16 2.02 6.38 -2.91 -0.02 2.00 16 39 H 0.42 4.08 6.84 -92.71 -0.63 3.45 16 40 H 0.11 0.56 8.14 -2.39 -0.02 0.54 16 41 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 42 H 0.05 0.76 8.14 -2.38 -0.02 0.74 16 43 H 0.14 3.18 7.63 -2.91 -0.02 3.16 16 44 H 0.15 2.99 8.06 -2.91 -0.02 2.97 16 Total: -1.00 -66.69 366.69 4.28 -62.41 By element: Atomic # 1 Polarization: 26.30 SS G_CDS: 0.36 Total: 26.66 kcal Atomic # 6 Polarization: -5.03 SS G_CDS: 6.22 Total: 1.19 kcal Atomic # 7 Polarization: -78.78 SS G_CDS: -3.87 Total: -82.65 kcal Atomic # 8 Polarization: -49.17 SS G_CDS: -0.14 Total: -49.31 kcal Atomic # 14 Polarization: 39.99 SS G_CDS: 1.71 Total: 41.70 kcal Total: -66.69 4.28 -62.41 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299078990.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.068 kcal (2) G-P(sol) polarization free energy of solvation -66.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds