Wall clock time and date at job start Tue Mar 31 2020 11:05:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47103 * 2 1 4 4 H 1.09000 * 109.47380 * 55.00576 * 3 2 1 5 5 C 1.50710 * 109.47267 * 175.00116 * 3 2 1 6 6 H 1.07998 * 119.99789 * 120.00227 * 5 3 2 7 7 C 1.37880 * 119.99848 * 300.00436 * 5 3 2 8 8 N 1.31510 * 119.99695 * 180.02562 * 7 5 3 9 9 Si 1.86806 * 119.99858 * 359.97438 * 7 5 3 10 10 H 1.48492 * 109.46945 * 90.00441 * 9 7 5 11 11 H 1.48505 * 109.46682 * 210.00174 * 9 7 5 12 12 H 1.48491 * 109.47382 * 330.00009 * 9 7 5 13 13 N 1.46494 * 109.47305 * 294.99928 * 3 2 1 14 14 C 1.34784 * 119.99635 * 85.00093 * 13 3 2 15 15 O 1.21279 * 119.99925 * 359.97438 * 14 13 3 16 16 C 1.50700 * 119.99961 * 180.02562 * 14 13 3 17 17 H 1.08996 * 109.36356 * 60.25937 * 16 14 13 18 18 C 1.52663 * 109.36364 * 180.02562 * 16 14 13 19 19 N 1.46152 * 110.90048 * 69.46057 * 18 16 14 20 20 C 1.46498 * 119.51169 * 220.30773 * 19 18 16 21 21 C 1.34678 * 120.96876 * 40.32336 * 19 18 16 22 22 O 1.21551 * 120.33821 * 172.63501 * 21 19 18 23 23 C 1.47824 * 119.32973 * 352.65651 * 21 19 18 24 24 C 1.39235 * 121.10203 * 167.17570 * 23 21 19 25 25 C 1.38066 * 119.65932 * 180.42569 * 24 23 21 26 26 C 1.38377 * 120.14781 * 359.58033 * 25 24 23 27 27 C 1.38408 * 120.40638 * 359.46921 * 26 25 24 28 28 C 1.37834 * 119.99005 * 0.26657 * 27 26 25 29 29 H 1.09003 * 109.46445 * 299.99766 * 1 2 3 30 30 H 1.09000 * 109.47153 * 59.99728 * 1 2 3 31 31 H 1.08998 * 109.47000 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47180 * 240.00326 * 2 1 3 33 33 H 1.09000 * 109.47366 * 119.99762 * 2 1 3 34 34 H 0.97009 * 119.99767 * 180.02562 * 8 7 5 35 35 H 0.96995 * 120.00292 * 265.27526 * 13 3 2 36 36 H 1.09003 * 109.19330 * 189.82410 * 18 16 14 37 37 H 1.08992 * 109.18996 * 309.09219 * 18 16 14 38 38 H 1.09001 * 109.47216 * 90.00131 * 20 19 18 39 39 H 1.09001 * 109.47204 * 209.99640 * 20 19 18 40 40 H 1.08994 * 109.47435 * 329.99387 * 20 19 18 41 41 H 1.07999 * 120.17103 * 0.39764 * 24 23 21 42 42 H 1.07997 * 119.92383 * 179.56543 * 25 24 23 43 43 H 1.08004 * 119.80222 * 179.49145 * 26 25 24 44 44 H 1.08004 * 120.01036 * 180.28497 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9816 0.8419 5 6 3.5420 1.4444 0.1238 6 1 4.1472 1.8890 -0.6523 7 6 4.1434 0.8784 1.2279 8 7 5.4540 0.8804 1.3362 9 14 3.0964 0.1099 2.5706 10 1 2.8746 -1.3261 2.2644 11 1 3.7942 0.2358 3.8754 12 1 1.7882 0.8092 2.6395 13 7 1.6525 2.0975 -1.2517 14 6 0.4351 2.6644 -1.3668 15 8 -0.3396 2.6319 -0.4343 16 6 0.0362 3.3378 -2.6547 17 1 0.0633 2.6106 -3.4661 18 6 -1.3796 3.8925 -2.5184 19 7 -1.4099 5.0223 -1.5918 20 6 -2.5248 5.1539 -0.6505 21 6 -0.4282 5.9443 -1.5908 22 8 -0.5290 6.9477 -0.9121 23 6 0.7729 5.7240 -2.4238 24 6 1.6815 6.7519 -2.6618 25 6 2.7890 6.5155 -3.4517 26 6 2.9990 5.2610 -3.9966 27 6 2.1090 4.2308 -3.7467 28 6 1.0026 4.4528 -2.9553 29 1 -0.3632 0.5138 0.8901 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 5.8772 0.4819 2.1128 35 1 2.2704 2.1197 -1.9991 36 1 -1.7312 4.2216 -3.4963 37 1 -2.0380 3.1071 -2.1475 38 1 -2.2820 4.6326 0.2754 39 1 -2.6987 6.2089 -0.4385 40 1 -3.4230 4.7184 -1.0880 41 1 1.5206 7.7291 -2.2312 42 1 3.4927 7.3115 -3.6449 43 1 3.8628 5.0844 -4.6204 44 1 2.2816 3.2529 -4.1716 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000346565241.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:05:08 Heat of formation + Delta-G solvation = -61.462489 kcal Electronic energy + Delta-G solvation = -27686.976075 eV Core-core repulsion = 23989.276709 eV Total energy + Delta-G solvation = -3697.699366 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.20154 -40.48266 -39.30249 -37.62960 -36.67427 -34.53845 -34.11161 -32.86746 -32.17919 -30.36603 -29.44567 -28.11738 -25.81187 -24.51622 -24.08484 -23.26301 -22.25751 -21.36272 -20.10091 -18.93106 -18.71724 -17.92468 -17.70043 -17.46558 -16.72695 -16.49215 -16.16418 -15.91253 -15.67625 -15.41074 -15.02977 -14.85223 -14.65303 -14.51036 -14.12649 -13.83807 -13.76928 -13.57464 -13.41691 -13.35283 -13.26937 -12.93994 -12.78081 -12.75388 -12.43778 -12.38148 -11.99775 -11.86446 -11.38813 -11.23733 -11.04365 -10.88059 -10.83171 -10.04922 -9.83309 -9.72669 -9.55167 -8.39355 -6.43752 -0.19625 0.31759 1.23081 1.32587 1.41260 1.72912 1.77440 2.00475 2.23671 2.41079 2.85724 2.96896 3.43503 3.49917 3.57512 3.85054 3.95750 4.17860 4.26037 4.31954 4.34554 4.38383 4.41514 4.46027 4.52612 4.57819 4.62263 4.72124 4.79415 4.86194 4.89631 5.00257 5.04262 5.15323 5.24212 5.31710 5.37715 5.42158 5.44675 5.48341 5.54399 5.67570 5.92504 6.13626 6.26863 6.58418 6.88573 7.00877 7.19188 7.47022 8.75760 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.013447 B = 0.005217 C = 0.004444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2081.722593 B = 5365.566361 C = 6299.410100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.136 4.136 3 C 0.252 3.748 4 H 0.011 0.989 5 C -0.530 4.530 6 H 0.057 0.943 7 C 0.030 3.970 8 N -0.932 5.932 9 Si 0.934 3.066 10 H -0.256 1.256 11 H -0.297 1.297 12 H -0.266 1.266 13 N -0.696 5.696 14 C 0.507 3.493 15 O -0.567 6.567 16 C -0.084 4.084 17 H 0.170 0.830 18 C 0.130 3.870 19 N -0.600 5.600 20 C 0.089 3.911 21 C 0.547 3.453 22 O -0.587 6.587 23 C -0.155 4.155 24 C -0.077 4.077 25 C -0.126 4.126 26 C -0.085 4.085 27 C -0.117 4.117 28 C -0.053 4.053 29 H 0.030 0.970 30 H 0.062 0.938 31 H 0.058 0.942 32 H 0.073 0.927 33 H 0.039 0.961 34 H 0.269 0.731 35 H 0.404 0.596 36 H 0.110 0.890 37 H 0.109 0.891 38 H 0.039 0.961 39 H 0.064 0.936 40 H 0.106 0.894 41 H 0.124 0.876 42 H 0.154 0.846 43 H 0.162 0.838 44 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.882 3.930 -16.229 20.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.174 4.174 3 C 0.147 3.853 4 H 0.029 0.971 5 C -0.568 4.568 6 H 0.075 0.925 7 C -0.169 4.169 8 N -0.571 5.571 9 Si 0.762 3.238 10 H -0.181 1.181 11 H -0.225 1.225 12 H -0.191 1.191 13 N -0.345 5.345 14 C 0.294 3.706 15 O -0.447 6.447 16 C -0.105 4.105 17 H 0.187 0.813 18 C 0.008 3.992 19 N -0.330 5.330 20 C -0.053 4.053 21 C 0.338 3.662 22 O -0.469 6.469 23 C -0.158 4.158 24 C -0.096 4.096 25 C -0.144 4.144 26 C -0.103 4.103 27 C -0.135 4.135 28 C -0.054 4.054 29 H 0.050 0.950 30 H 0.081 0.919 31 H 0.077 0.923 32 H 0.092 0.908 33 H 0.057 0.943 34 H 0.078 0.922 35 H 0.240 0.760 36 H 0.128 0.872 37 H 0.127 0.873 38 H 0.058 0.942 39 H 0.082 0.918 40 H 0.124 0.876 41 H 0.142 0.858 42 H 0.172 0.828 43 H 0.179 0.821 44 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -12.371 4.325 -15.090 19.987 hybrid contribution 0.466 -0.130 1.174 1.270 sum -11.906 4.195 -13.916 18.788 Atomic orbital electron populations 1.21747 0.94888 1.00572 1.01677 1.22183 0.96119 0.98081 1.01060 1.18720 0.93049 0.89757 0.83771 0.97089 1.21298 0.90472 1.38178 1.06871 0.92488 1.25511 0.95658 0.96047 0.99725 1.69971 1.10159 1.46213 1.30800 0.86082 0.79134 0.80122 0.78497 1.18126 1.22452 1.19095 1.45941 1.15809 1.55995 1.16725 1.20779 0.81822 0.78120 0.89907 1.90672 1.52254 1.60413 1.41323 1.20833 0.95176 0.97014 0.97513 0.81300 1.21507 0.94953 0.88453 0.94269 1.47461 1.23114 1.24856 1.37604 1.21684 0.88827 1.02275 0.92479 1.18661 0.83753 0.82284 0.81530 1.90685 1.80528 1.29861 1.45875 1.19820 0.96993 0.96246 1.02767 1.21269 0.93471 0.98500 0.96408 1.21512 0.96898 0.98961 0.97055 1.21800 0.98928 0.92045 0.97494 1.21389 0.92860 1.01354 0.97873 1.19733 0.96734 0.92056 0.96870 0.95040 0.91872 0.92282 0.90784 0.94309 0.92183 0.76025 0.87213 0.87324 0.94206 0.91766 0.87553 0.85814 0.82800 0.82066 0.81864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.68 8.51 71.98 0.61 -4.07 16 2 C -0.14 -5.57 5.11 30.59 0.16 -5.42 16 3 C 0.25 11.58 1.83 44.25 0.08 11.66 16 4 H 0.01 0.60 6.63 -2.39 -0.02 0.58 16 5 C -0.53 -28.52 9.31 25.60 0.24 -28.28 16 6 H 0.06 3.25 7.98 -2.91 -0.02 3.23 16 7 C 0.03 1.71 5.45 84.66 0.46 2.17 16 8 N -0.93 -55.84 13.96 21.45 0.30 -55.54 16 9 Si 0.93 45.17 24.41 68.60 1.67 46.85 16 10 H -0.26 -11.47 6.83 99.48 0.68 -10.79 16 11 H -0.30 -14.36 7.11 99.48 0.71 -13.65 16 12 H -0.27 -12.97 6.53 99.48 0.65 -12.32 16 13 N -0.70 -25.20 4.91 -446.08 -2.19 -27.39 16 14 C 0.51 16.63 5.62 87.66 0.49 17.12 16 15 O -0.57 -22.36 12.61 -3.03 -0.04 -22.40 16 16 C -0.08 -1.82 2.73 -12.43 -0.03 -1.86 16 17 H 0.17 2.07 8.07 -2.39 -0.02 2.05 16 18 C 0.13 2.61 5.32 86.33 0.46 3.07 16 19 N -0.60 -17.03 2.68 -851.93 -2.28 -19.31 16 20 C 0.09 2.32 10.39 127.77 1.33 3.64 16 21 C 0.55 19.05 7.51 86.80 0.65 19.70 16 22 O -0.59 -24.53 16.07 -3.88 -0.06 -24.59 16 23 C -0.16 -4.67 5.79 -20.15 -0.12 -4.79 16 24 C -0.08 -2.13 9.63 22.47 0.22 -1.92 16 25 C -0.13 -2.63 10.04 22.26 0.22 -2.41 16 26 C -0.08 -1.53 10.04 22.34 0.22 -1.31 16 27 C -0.12 -2.22 9.07 22.21 0.20 -2.01 16 28 C -0.05 -1.27 4.75 -19.64 -0.09 -1.36 16 29 H 0.03 1.24 7.85 -2.39 -0.02 1.22 16 30 H 0.06 2.08 5.64 -2.39 -0.01 2.07 16 31 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 32 H 0.07 2.79 8.14 -2.39 -0.02 2.77 16 33 H 0.04 1.71 3.22 -2.39 -0.01 1.70 16 34 H 0.27 15.19 8.31 -92.70 -0.77 14.42 16 35 H 0.40 12.72 7.79 -92.71 -0.72 11.99 16 36 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.11 1.97 7.59 -2.39 -0.02 1.96 16 38 H 0.04 1.20 8.14 -2.39 -0.02 1.19 16 39 H 0.06 1.77 7.31 -2.39 -0.02 1.75 16 40 H 0.11 1.85 8.06 -2.39 -0.02 1.83 16 41 H 0.12 3.51 7.79 -2.91 -0.02 3.49 16 42 H 0.15 2.33 8.06 -2.91 -0.02 2.31 16 43 H 0.16 1.88 8.06 -2.91 -0.02 1.86 16 44 H 0.16 2.02 8.06 -2.91 -0.02 2.00 16 Total: -1.00 -78.33 349.19 2.72 -75.61 By element: Atomic # 1 Polarization: 22.61 SS G_CDS: 0.22 Total: 22.83 kcal Atomic # 6 Polarization: -1.16 SS G_CDS: 5.10 Total: 3.94 kcal Atomic # 7 Polarization: -98.07 SS G_CDS: -4.17 Total: -102.24 kcal Atomic # 8 Polarization: -46.89 SS G_CDS: -0.10 Total: -46.99 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 1.67 Total: 46.85 kcal Total: -78.33 2.72 -75.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346565241.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.146 kcal (2) G-P(sol) polarization free energy of solvation -78.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds