Wall clock time and date at job start Tue Mar 31 2020 11:05:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.46867 * 2 1 4 4 H 1.09002 * 109.47398 * 54.99853 * 3 2 1 5 5 C 1.50699 * 109.47083 * 174.99799 * 3 2 1 6 6 H 1.07999 * 120.00019 * 119.99669 * 5 3 2 7 7 C 1.37877 * 120.00129 * 299.99954 * 5 3 2 8 8 N 1.31519 * 119.99723 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 119.99900 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47147 * 90.00197 * 9 7 5 11 11 H 1.48499 * 109.46797 * 209.99607 * 9 7 5 12 12 H 1.48500 * 109.47032 * 329.99738 * 9 7 5 13 13 N 1.46499 * 109.46840 * 294.99527 * 3 2 1 14 14 C 1.34781 * 119.99874 * 85.00543 * 13 3 2 15 15 O 1.21278 * 120.00033 * 359.97438 * 14 13 3 16 16 C 1.50703 * 120.00101 * 179.97438 * 14 13 3 17 17 H 1.09002 * 109.36210 * 299.73577 * 16 14 13 18 18 C 1.52665 * 109.36431 * 179.97438 * 16 14 13 19 19 N 1.46146 * 110.90119 * 290.54338 * 18 16 14 20 20 C 1.46497 * 119.52127 * 139.69464 * 19 18 16 21 21 C 1.34689 * 120.96466 * 319.67138 * 19 18 16 22 22 O 1.21555 * 120.33273 * 187.36758 * 21 19 18 23 23 C 1.47816 * 119.32695 * 7.34998 * 21 19 18 24 24 C 1.39240 * 121.09880 * 192.82388 * 23 21 19 25 25 C 1.38061 * 119.66298 * 179.57332 * 24 23 21 26 26 C 1.38391 * 120.14798 * 0.39741 * 25 24 23 27 27 C 1.38410 * 120.39782 * 0.54877 * 26 25 24 28 28 C 1.37831 * 119.99442 * 359.74192 * 27 26 25 29 29 H 1.09004 * 109.46908 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47443 * 300.00098 * 1 2 3 31 31 H 1.09001 * 109.47099 * 60.00379 * 1 2 3 32 32 H 1.08990 * 109.47398 * 239.99928 * 2 1 3 33 33 H 1.09001 * 109.47099 * 119.99621 * 2 1 3 34 34 H 0.97003 * 119.99231 * 179.97438 * 8 7 5 35 35 H 0.97002 * 120.00410 * 264.99761 * 13 3 2 36 36 H 1.09006 * 109.18907 * 50.90841 * 18 16 14 37 37 H 1.08998 * 109.19333 * 170.22076 * 18 16 14 38 38 H 1.08992 * 109.47207 * 89.99661 * 20 19 18 39 39 H 1.08999 * 109.47331 * 210.00223 * 20 19 18 40 40 H 1.09009 * 109.46621 * 329.99958 * 20 19 18 41 41 H 1.07995 * 120.16941 * 359.59841 * 24 23 21 42 42 H 1.07998 * 119.93137 * 180.41386 * 25 24 23 43 43 H 1.07996 * 119.80138 * 180.53469 * 26 25 24 44 44 H 1.08001 * 120.00074 * 179.75746 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5419 1.4444 0.1239 6 1 4.1472 1.8889 -0.6522 7 6 4.1432 0.8785 1.2280 8 7 3.4061 0.3376 2.1734 9 14 6.0050 0.8802 1.3812 10 1 6.4427 2.1131 2.0837 11 1 6.4390 -0.3107 2.1547 12 1 6.6131 0.8396 0.0270 13 7 1.6525 2.0974 -1.2519 14 6 0.4351 2.6643 -1.3671 15 8 -0.3396 2.6319 -0.4345 16 6 0.0366 3.3385 -2.6546 17 1 0.7263 4.1565 -2.8627 18 6 -1.3797 3.8919 -2.5190 19 7 -2.3589 2.8088 -2.4564 20 6 -3.4874 2.9088 -1.5276 21 6 -2.2393 1.7202 -3.2404 22 8 -3.1263 0.8900 -3.2776 23 6 -1.0185 1.5456 -4.0554 24 6 -0.9599 0.5911 -5.0675 25 6 0.1924 0.4593 -5.8164 26 6 1.2863 1.2664 -5.5568 27 6 1.2396 2.2032 -4.5390 28 6 0.0969 2.3401 -3.7804 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 3.8293 -0.0608 2.9500 35 1 2.2720 2.1231 -1.9978 36 1 -1.4458 4.4879 -1.6087 37 1 -1.6009 4.5249 -3.3784 38 1 -4.3256 3.3963 -2.0254 39 1 -3.7852 1.9099 -1.2088 40 1 -3.1910 3.4947 -0.6574 41 1 -1.8115 -0.0426 -5.2659 42 1 0.2403 -0.2750 -6.6069 43 1 2.1818 1.1645 -6.1518 44 1 2.0983 2.8270 -4.3394 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000346565709.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:05:16 Heat of formation + Delta-G solvation = -46.025198 kcal Electronic energy + Delta-G solvation = -27818.821182 eV Core-core repulsion = 24121.791227 eV Total energy + Delta-G solvation = -3697.029955 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.03754 -38.88604 -38.24621 -36.14364 -34.92001 -33.14375 -32.23026 -31.30473 -30.73042 -29.30491 -27.30372 -26.80441 -24.56805 -23.09785 -23.00209 -22.01494 -20.56020 -19.48356 -18.69919 -17.64022 -17.30922 -16.57131 -16.16134 -15.47933 -15.25376 -15.15194 -14.99333 -14.45826 -14.28014 -14.21713 -13.60448 -13.42443 -13.24216 -12.79782 -12.65301 -12.63086 -12.31536 -12.28400 -11.91336 -11.76546 -11.48787 -11.36457 -11.25687 -11.03740 -10.98062 -10.85730 -10.34472 -10.18398 -9.80310 -9.64440 -9.42851 -9.07815 -9.03814 -8.72658 -8.54211 -8.43426 -7.85705 -6.14856 -4.24623 0.81160 1.24282 2.87624 3.05710 3.21760 3.27985 3.29335 3.30550 3.75740 4.01997 4.33055 4.47103 4.54524 4.59122 4.83176 4.95472 5.15504 5.18760 5.26326 5.29020 5.39166 5.53159 5.54637 5.61315 5.72086 5.73712 5.88622 5.99538 6.25133 6.29130 6.35339 6.41525 6.47851 6.51577 6.67978 6.80062 7.06123 7.18884 7.35221 7.41612 7.42834 7.59600 7.69800 7.87063 8.16106 8.23553 8.60919 8.73450 9.05987 9.42665 10.90376 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.015300 B = 0.004727 C = 0.004176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1829.619018 B = 5922.330966 C = 6703.345767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.125 4.125 3 C 0.273 3.727 4 H 0.049 0.951 5 C -0.534 4.534 6 H 0.060 0.940 7 C 0.067 3.933 8 N -0.881 5.881 9 Si 0.900 3.100 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.702 5.702 14 C 0.510 3.490 15 O -0.535 6.535 16 C -0.099 4.099 17 H 0.121 0.879 18 C 0.138 3.862 19 N -0.597 5.597 20 C 0.095 3.905 21 C 0.562 3.438 22 O -0.539 6.539 23 C -0.126 4.126 24 C -0.058 4.058 25 C -0.130 4.130 26 C -0.089 4.089 27 C -0.121 4.121 28 C -0.040 4.040 29 H 0.021 0.979 30 H 0.048 0.952 31 H 0.037 0.963 32 H 0.029 0.971 33 H 0.098 0.902 34 H 0.264 0.736 35 H 0.387 0.613 36 H 0.099 0.901 37 H 0.071 0.929 38 H 0.050 0.950 39 H 0.073 0.927 40 H 0.076 0.924 41 H 0.134 0.866 42 H 0.129 0.871 43 H 0.129 0.871 44 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.866 6.480 -14.522 16.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.164 4.164 3 C 0.171 3.829 4 H 0.067 0.933 5 C -0.573 4.573 6 H 0.078 0.922 7 C -0.136 4.136 8 N -0.519 5.519 9 Si 0.728 3.272 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.199 1.199 13 N -0.349 5.349 14 C 0.293 3.707 15 O -0.413 6.413 16 C -0.121 4.121 17 H 0.139 0.861 18 C 0.014 3.986 19 N -0.328 5.328 20 C -0.048 4.048 21 C 0.352 3.648 22 O -0.418 6.418 23 C -0.129 4.129 24 C -0.077 4.077 25 C -0.148 4.148 26 C -0.107 4.107 27 C -0.139 4.139 28 C -0.041 4.041 29 H 0.040 0.960 30 H 0.067 0.933 31 H 0.056 0.944 32 H 0.048 0.952 33 H 0.116 0.884 34 H 0.075 0.925 35 H 0.219 0.781 36 H 0.117 0.883 37 H 0.089 0.911 38 H 0.068 0.932 39 H 0.092 0.908 40 H 0.094 0.906 41 H 0.152 0.848 42 H 0.147 0.853 43 H 0.146 0.854 44 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -6.872 5.925 -13.611 16.358 hybrid contribution 1.537 -0.064 -0.192 1.550 sum -5.336 5.860 -13.804 15.917 Atomic orbital electron populations 1.21800 0.98272 0.98039 1.01008 1.21915 0.92580 0.99791 1.02148 1.18783 0.94171 0.89163 0.80779 0.93324 1.21205 0.90669 1.39152 1.06252 0.92165 1.24883 0.98564 0.94766 0.95407 1.69901 1.35135 1.37500 1.09319 0.86467 0.84892 0.77662 0.78186 1.20569 1.21074 1.19860 1.46464 1.14405 1.55518 1.18513 1.19857 0.83071 0.79889 0.87901 1.90679 1.51130 1.59581 1.39949 1.20822 0.99405 0.98343 0.93500 0.86144 1.21177 0.85309 0.88797 1.03327 1.47249 1.26624 1.19478 1.39480 1.21617 0.87505 1.03386 0.92270 1.18125 0.86123 0.81046 0.79537 1.90735 1.41712 1.43122 1.66236 1.19740 0.94318 0.99517 0.99349 1.21144 0.98412 0.95125 0.92981 1.21162 0.93181 1.00089 1.00394 1.21328 0.98294 0.94427 0.96680 1.20978 0.97254 0.99673 0.95985 1.19679 0.93777 0.95708 0.94936 0.96012 0.93314 0.94400 0.95194 0.88353 0.92546 0.78097 0.88317 0.91136 0.93178 0.90839 0.90553 0.84807 0.85347 0.85352 0.84999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.13 8.51 37.16 0.32 -2.82 16 2 C -0.13 -3.09 5.45 -26.73 -0.15 -3.24 16 3 C 0.27 6.69 2.24 -69.08 -0.15 6.54 16 4 H 0.05 1.38 7.58 -51.93 -0.39 0.99 16 5 C -0.53 -13.75 8.73 -34.44 -0.30 -14.05 16 6 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 7 C 0.07 1.77 5.29 -17.82 -0.09 1.68 16 8 N -0.88 -24.46 11.30 55.43 0.63 -23.83 16 9 Si 0.90 20.25 29.54 -169.99 -5.02 15.23 16 10 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 11 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 12 H -0.27 -6.01 7.11 56.52 0.40 -5.60 16 13 N -0.70 -13.88 4.91 -54.93 -0.27 -14.15 16 14 C 0.51 9.35 5.62 -10.98 -0.06 9.29 16 15 O -0.54 -11.48 12.61 5.56 0.07 -11.41 16 16 C -0.10 -1.31 2.73 -93.15 -0.25 -1.56 16 17 H 0.12 1.21 8.07 -51.93 -0.42 0.79 16 18 C 0.14 1.69 5.37 -4.40 -0.02 1.66 16 19 N -0.60 -8.94 2.68 -183.22 -0.49 -9.43 16 20 C 0.09 1.28 10.37 59.85 0.62 1.90 16 21 C 0.56 9.64 7.50 -12.38 -0.09 9.55 16 22 O -0.54 -10.66 16.19 5.32 0.09 -10.57 16 23 C -0.13 -1.91 5.79 -105.07 -0.61 -2.52 16 24 C -0.06 -0.77 9.63 -39.27 -0.38 -1.15 16 25 C -0.13 -1.41 10.04 -39.59 -0.40 -1.81 16 26 C -0.09 -0.91 10.04 -39.46 -0.40 -1.31 16 27 C -0.12 -1.35 9.06 -39.67 -0.36 -1.71 16 28 C -0.04 -0.53 4.75 -104.29 -0.49 -1.03 16 29 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.05 1.19 7.85 -51.93 -0.41 0.79 16 31 H 0.04 0.88 5.64 -51.93 -0.29 0.59 16 32 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.10 2.68 5.95 -51.93 -0.31 2.37 16 34 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 35 H 0.39 6.74 7.78 -40.82 -0.32 6.42 16 36 H 0.10 1.17 7.37 -51.93 -0.38 0.78 16 37 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 39 H 0.07 1.13 7.51 -51.93 -0.39 0.74 16 40 H 0.08 0.96 7.80 -51.92 -0.40 0.56 16 41 H 0.13 1.74 7.79 -52.49 -0.41 1.33 16 42 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 43 H 0.13 0.98 8.06 -52.49 -0.42 0.55 16 44 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 LS Contribution 355.79 15.07 5.36 5.36 Total: -1.00 -32.46 355.79 -8.69 -41.15 By element: Atomic # 1 Polarization: 14.46 SS G_CDS: -6.23 Total: 8.24 kcal Atomic # 6 Polarization: 2.24 SS G_CDS: -2.83 Total: -0.58 kcal Atomic # 7 Polarization: -47.28 SS G_CDS: -0.13 Total: -47.41 kcal Atomic # 8 Polarization: -22.14 SS G_CDS: 0.16 Total: -21.98 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -5.02 Total: 15.23 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -32.46 -8.69 -41.15 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346565709.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.875 kcal (2) G-P(sol) polarization free energy of solvation -32.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds