Wall clock time and date at job start Tue Mar 31 2020 11:05:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.46867 * 2 1 4 4 H 1.09002 * 109.47398 * 54.99853 * 3 2 1 5 5 C 1.50699 * 109.47083 * 174.99799 * 3 2 1 6 6 H 1.07999 * 120.00019 * 119.99669 * 5 3 2 7 7 C 1.37877 * 120.00129 * 299.99954 * 5 3 2 8 8 N 1.31519 * 119.99723 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 119.99900 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47147 * 90.00197 * 9 7 5 11 11 H 1.48499 * 109.46797 * 209.99607 * 9 7 5 12 12 H 1.48500 * 109.47032 * 329.99738 * 9 7 5 13 13 N 1.46499 * 109.46840 * 294.99527 * 3 2 1 14 14 C 1.34781 * 119.99874 * 85.00543 * 13 3 2 15 15 O 1.21278 * 120.00033 * 359.97438 * 14 13 3 16 16 C 1.50703 * 120.00101 * 179.97438 * 14 13 3 17 17 H 1.09002 * 109.36210 * 299.73577 * 16 14 13 18 18 C 1.52665 * 109.36431 * 179.97438 * 16 14 13 19 19 N 1.46146 * 110.90119 * 290.54338 * 18 16 14 20 20 C 1.46497 * 119.52127 * 139.69464 * 19 18 16 21 21 C 1.34689 * 120.96466 * 319.67138 * 19 18 16 22 22 O 1.21555 * 120.33273 * 187.36758 * 21 19 18 23 23 C 1.47816 * 119.32695 * 7.34998 * 21 19 18 24 24 C 1.39240 * 121.09880 * 192.82388 * 23 21 19 25 25 C 1.38061 * 119.66298 * 179.57332 * 24 23 21 26 26 C 1.38391 * 120.14798 * 0.39741 * 25 24 23 27 27 C 1.38410 * 120.39782 * 0.54877 * 26 25 24 28 28 C 1.37831 * 119.99442 * 359.74192 * 27 26 25 29 29 H 1.09004 * 109.46908 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47443 * 300.00098 * 1 2 3 31 31 H 1.09001 * 109.47099 * 60.00379 * 1 2 3 32 32 H 1.08990 * 109.47398 * 239.99928 * 2 1 3 33 33 H 1.09001 * 109.47099 * 119.99621 * 2 1 3 34 34 H 0.97003 * 119.99231 * 179.97438 * 8 7 5 35 35 H 0.97002 * 120.00410 * 264.99761 * 13 3 2 36 36 H 1.09006 * 109.18907 * 50.90841 * 18 16 14 37 37 H 1.08998 * 109.19333 * 170.22076 * 18 16 14 38 38 H 1.08992 * 109.47207 * 89.99661 * 20 19 18 39 39 H 1.08999 * 109.47331 * 210.00223 * 20 19 18 40 40 H 1.09009 * 109.46621 * 329.99958 * 20 19 18 41 41 H 1.07995 * 120.16941 * 359.59841 * 24 23 21 42 42 H 1.07998 * 119.93137 * 180.41386 * 25 24 23 43 43 H 1.07996 * 119.80138 * 180.53469 * 26 25 24 44 44 H 1.08001 * 120.00074 * 179.75746 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5419 1.4444 0.1239 6 1 4.1472 1.8889 -0.6522 7 6 4.1432 0.8785 1.2280 8 7 3.4061 0.3376 2.1734 9 14 6.0050 0.8802 1.3812 10 1 6.4427 2.1131 2.0837 11 1 6.4390 -0.3107 2.1547 12 1 6.6131 0.8396 0.0270 13 7 1.6525 2.0974 -1.2519 14 6 0.4351 2.6643 -1.3671 15 8 -0.3396 2.6319 -0.4345 16 6 0.0366 3.3385 -2.6546 17 1 0.7263 4.1565 -2.8627 18 6 -1.3797 3.8919 -2.5190 19 7 -2.3589 2.8088 -2.4564 20 6 -3.4874 2.9088 -1.5276 21 6 -2.2393 1.7202 -3.2404 22 8 -3.1263 0.8900 -3.2776 23 6 -1.0185 1.5456 -4.0554 24 6 -0.9599 0.5911 -5.0675 25 6 0.1924 0.4593 -5.8164 26 6 1.2863 1.2664 -5.5568 27 6 1.2396 2.2032 -4.5390 28 6 0.0969 2.3401 -3.7804 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 3.8293 -0.0608 2.9500 35 1 2.2720 2.1231 -1.9978 36 1 -1.4458 4.4879 -1.6087 37 1 -1.6009 4.5249 -3.3784 38 1 -4.3256 3.3963 -2.0254 39 1 -3.7852 1.9099 -1.2088 40 1 -3.1910 3.4947 -0.6574 41 1 -1.8115 -0.0426 -5.2659 42 1 0.2403 -0.2750 -6.6069 43 1 2.1818 1.1645 -6.1518 44 1 2.0983 2.8270 -4.3394 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000346565709.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:05:15 Heat of formation + Delta-G solvation = -66.639658 kcal Electronic energy + Delta-G solvation = -27819.715092 eV Core-core repulsion = 24121.791227 eV Total energy + Delta-G solvation = -3697.923865 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.18004 -40.36161 -39.27891 -37.51723 -36.59122 -34.49284 -33.89742 -32.64949 -32.13212 -30.32255 -29.03826 -28.08503 -25.83888 -24.79362 -24.07218 -23.15618 -22.06057 -21.22920 -19.99544 -18.78377 -18.64072 -17.77418 -17.71526 -17.12198 -16.61206 -16.44847 -16.15518 -15.89082 -15.59231 -15.41351 -14.88626 -14.69005 -14.60277 -14.39779 -14.00978 -13.70698 -13.62430 -13.37775 -13.34977 -13.20734 -13.13764 -12.85583 -12.76435 -12.68357 -12.40571 -12.18477 -12.07066 -11.98087 -11.62982 -11.06127 -11.02525 -10.81601 -10.52237 -10.03614 -9.79453 -9.61426 -9.53663 -8.14522 -6.31783 -0.17709 0.33650 1.46484 1.46961 1.57299 1.76658 1.84006 2.02035 2.35987 2.59221 2.90078 3.15573 3.44208 3.51976 3.59706 3.88853 4.01512 4.20219 4.31880 4.38364 4.41813 4.43456 4.48398 4.50934 4.57821 4.63285 4.68319 4.74090 4.80843 4.86696 5.02318 5.03037 5.19416 5.33517 5.38741 5.40068 5.44804 5.49645 5.54374 5.64483 5.76816 5.92700 5.94393 6.16213 6.28528 6.76921 7.00082 7.02588 7.35724 7.60429 8.90887 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.015300 B = 0.004727 C = 0.004176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1829.619018 B = 5922.330966 C = 6703.345767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.117 4.117 3 C 0.284 3.716 4 H 0.000 1.000 5 C -0.543 4.543 6 H 0.075 0.925 7 C 0.015 3.985 8 N -0.918 5.918 9 Si 0.969 3.031 10 H -0.277 1.277 11 H -0.289 1.289 12 H -0.258 1.258 13 N -0.701 5.701 14 C 0.504 3.496 15 O -0.572 6.572 16 C -0.086 4.086 17 H 0.164 0.836 18 C 0.131 3.869 19 N -0.600 5.600 20 C 0.093 3.907 21 C 0.548 3.452 22 O -0.585 6.585 23 C -0.153 4.153 24 C -0.076 4.076 25 C -0.125 4.125 26 C -0.082 4.082 27 C -0.118 4.118 28 C -0.051 4.051 29 H 0.031 0.969 30 H 0.027 0.973 31 H 0.036 0.964 32 H 0.034 0.966 33 H 0.071 0.929 34 H 0.263 0.737 35 H 0.401 0.599 36 H 0.102 0.898 37 H 0.109 0.891 38 H 0.074 0.926 39 H 0.045 0.955 40 H 0.083 0.917 41 H 0.124 0.876 42 H 0.156 0.844 43 H 0.165 0.835 44 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.358 7.868 -17.260 19.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.156 4.156 3 C 0.180 3.820 4 H 0.018 0.982 5 C -0.581 4.581 6 H 0.093 0.907 7 C -0.185 4.185 8 N -0.556 5.556 9 Si 0.794 3.206 10 H -0.203 1.203 11 H -0.215 1.215 12 H -0.181 1.181 13 N -0.349 5.349 14 C 0.290 3.710 15 O -0.452 6.452 16 C -0.108 4.108 17 H 0.181 0.819 18 C 0.008 3.992 19 N -0.330 5.330 20 C -0.049 4.049 21 C 0.338 3.662 22 O -0.468 6.468 23 C -0.156 4.156 24 C -0.095 4.095 25 C -0.143 4.143 26 C -0.100 4.100 27 C -0.135 4.135 28 C -0.052 4.052 29 H 0.050 0.950 30 H 0.046 0.954 31 H 0.055 0.945 32 H 0.053 0.947 33 H 0.089 0.911 34 H 0.073 0.927 35 H 0.236 0.764 36 H 0.120 0.880 37 H 0.127 0.873 38 H 0.092 0.908 39 H 0.064 0.936 40 H 0.102 0.898 41 H 0.142 0.858 42 H 0.174 0.826 43 H 0.182 0.818 44 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -4.351 7.363 -16.386 18.484 hybrid contribution 0.719 -0.494 0.640 1.082 sum -3.632 6.869 -15.746 17.559 Atomic orbital electron populations 1.21606 0.97586 0.98274 0.99872 1.21762 0.92962 0.99980 1.00862 1.18276 0.93663 0.88521 0.81532 0.98183 1.21568 0.91289 1.38704 1.06564 0.90652 1.25778 1.03217 0.94415 0.95116 1.70063 1.37090 1.38522 1.09928 0.85391 0.79247 0.77288 0.78691 1.20322 1.21489 1.18149 1.46186 1.15570 1.55794 1.17357 1.20768 0.81844 0.78972 0.89395 1.90669 1.51934 1.60643 1.42001 1.20830 1.00688 0.99019 0.90228 0.81887 1.21484 0.84285 0.88222 1.05192 1.47466 1.27193 1.19657 1.38681 1.21655 0.88312 1.02084 0.92827 1.18671 0.86596 0.80994 0.79910 1.90688 1.43386 1.44706 1.67989 1.19784 0.94200 1.01319 1.00307 1.21266 0.99473 0.95160 0.93638 1.21516 0.92229 1.00372 1.00138 1.21794 0.99026 0.92999 0.96139 1.21379 0.97054 0.99803 0.95312 1.19697 0.94140 0.95807 0.95531 0.95000 0.95378 0.94465 0.94746 0.91108 0.92748 0.76369 0.87959 0.87347 0.90768 0.93611 0.89807 0.85825 0.82607 0.81791 0.82048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.61 8.51 71.98 0.61 -4.99 16 2 C -0.12 -5.87 5.45 30.60 0.17 -5.70 16 3 C 0.28 14.10 2.24 44.25 0.10 14.19 16 4 H 0.00 0.02 7.58 -2.39 -0.02 0.00 16 5 C -0.54 -27.58 8.73 25.60 0.22 -27.36 16 6 H 0.08 3.51 7.74 -2.91 -0.02 3.49 16 7 C 0.01 0.77 5.29 84.65 0.45 1.22 16 8 N -0.92 -52.06 11.30 21.45 0.24 -51.82 16 9 Si 0.97 40.89 29.54 68.60 2.03 42.92 16 10 H -0.28 -11.54 7.11 99.48 0.71 -10.83 16 11 H -0.29 -12.29 7.11 99.48 0.71 -11.58 16 12 H -0.26 -10.13 7.11 99.48 0.71 -9.42 16 13 N -0.70 -26.93 4.91 -446.09 -2.19 -29.12 16 14 C 0.50 18.07 5.62 87.66 0.49 18.56 16 15 O -0.57 -25.02 12.61 -3.02 -0.04 -25.06 16 16 C -0.09 -2.06 2.73 -12.43 -0.03 -2.09 16 17 H 0.16 2.49 8.07 -2.39 -0.02 2.47 16 18 C 0.13 2.95 5.37 86.33 0.46 3.41 16 19 N -0.60 -17.95 2.68 -851.92 -2.28 -20.23 16 20 C 0.09 2.61 10.37 127.77 1.33 3.93 16 21 C 0.55 19.21 7.50 86.79 0.65 19.86 16 22 O -0.59 -24.43 16.19 -3.89 -0.06 -24.50 16 23 C -0.15 -4.52 5.79 -20.15 -0.12 -4.64 16 24 C -0.08 -1.99 9.63 22.47 0.22 -1.77 16 25 C -0.12 -2.33 10.04 22.26 0.22 -2.11 16 26 C -0.08 -1.30 10.04 22.35 0.22 -1.07 16 27 C -0.12 -2.11 9.06 22.21 0.20 -1.91 16 28 C -0.05 -1.22 4.75 -19.65 -0.09 -1.31 16 29 H 0.03 1.42 8.14 -2.38 -0.02 1.40 16 30 H 0.03 1.43 7.85 -2.39 -0.02 1.41 16 31 H 0.04 1.78 5.64 -2.39 -0.01 1.76 16 32 H 0.03 1.66 8.14 -2.39 -0.02 1.64 16 33 H 0.07 3.99 5.95 -2.39 -0.01 3.97 16 34 H 0.26 14.25 8.31 -92.71 -0.77 13.48 16 35 H 0.40 12.90 7.78 -92.71 -0.72 12.18 16 36 H 0.10 2.24 7.37 -2.38 -0.02 2.23 16 37 H 0.11 1.68 8.14 -2.39 -0.02 1.67 16 38 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 39 H 0.04 1.51 7.51 -2.39 -0.02 1.49 16 40 H 0.08 2.16 7.80 -2.38 -0.02 2.14 16 41 H 0.12 3.34 7.79 -2.91 -0.02 3.32 16 42 H 0.16 1.98 8.06 -2.91 -0.02 1.95 16 43 H 0.16 1.48 8.06 -2.91 -0.02 1.45 16 44 H 0.16 1.92 8.06 -2.91 -0.02 1.90 16 Total: -1.00 -74.93 355.79 3.10 -71.84 By element: Atomic # 1 Polarization: 27.47 SS G_CDS: 0.30 Total: 27.77 kcal Atomic # 6 Polarization: 3.10 SS G_CDS: 5.10 Total: 8.21 kcal Atomic # 7 Polarization: -96.94 SS G_CDS: -4.23 Total: -101.17 kcal Atomic # 8 Polarization: -49.46 SS G_CDS: -0.10 Total: -49.56 kcal Atomic # 14 Polarization: 40.89 SS G_CDS: 2.03 Total: 42.92 kcal Total: -74.93 3.10 -71.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346565709.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.196 kcal (2) G-P(sol) polarization free energy of solvation -74.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds