Wall clock time and date at job start Tue Mar 31 2020 11:53:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50706 * 120.00103 * 2 1 4 4 N 1.46498 * 109.47046 * 124.99758 * 3 2 1 5 5 C 1.34783 * 119.99884 * 179.97438 * 4 3 2 6 6 O 1.21278 * 119.99543 * 0.02562 * 5 4 3 7 7 C 1.50703 * 119.99638 * 179.97438 * 5 4 3 8 8 N 1.46506 * 109.46523 * 180.02562 * 7 5 4 9 9 C 1.34773 * 119.99707 * 179.97438 * 8 7 5 10 10 O 1.21284 * 120.00085 * 0.02562 * 9 8 7 11 11 C 1.50697 * 119.99804 * 179.97438 * 9 8 7 12 12 C 1.53001 * 109.47066 * 180.02562 * 11 9 8 13 13 H 1.08997 * 109.47486 * 54.05268 * 12 11 9 14 14 C 1.50698 * 109.46901 * 294.05498 * 12 11 9 15 15 H 1.08002 * 120.00397 * 330.08136 * 14 12 11 16 16 C 1.37877 * 119.99983 * 150.08139 * 14 12 11 17 17 N 1.31513 * 120.00147 * 6.55933 * 16 14 12 18 18 Si 1.86806 * 120.00054 * 186.55449 * 16 14 12 19 19 H 1.48501 * 109.47229 * 179.97438 * 18 16 14 20 20 H 1.48498 * 109.47340 * 300.00345 * 18 16 14 21 21 H 1.48505 * 109.46728 * 60.00313 * 18 16 14 22 22 C 1.50704 * 109.47322 * 174.05774 * 12 11 9 23 23 C 1.38232 * 120.00156 * 64.30019 * 22 12 11 24 24 C 1.38227 * 120.00423 * 179.81276 * 23 22 12 25 25 C 1.38243 * 119.99751 * 0.39675 * 24 23 22 26 26 C 1.38236 * 119.99618 * 359.85625 * 25 24 23 27 27 C 1.38229 * 120.00074 * 359.95579 * 26 25 24 28 28 H 1.08000 * 119.99783 * 179.97438 * 1 2 3 29 29 H 1.07995 * 119.99981 * 0.02562 * 1 2 3 30 30 H 1.08004 * 120.00077 * 179.97438 * 2 1 3 31 31 H 1.08997 * 109.46866 * 4.99574 * 3 2 1 32 32 H 1.09002 * 109.46876 * 244.99960 * 3 2 1 33 33 H 0.96997 * 120.00490 * 0.02562 * 4 3 2 34 34 H 1.08999 * 109.47241 * 60.00948 * 7 5 4 35 35 H 1.08992 * 109.47528 * 299.99979 * 7 5 4 36 36 H 0.97001 * 120.00254 * 0.02562 * 8 7 5 37 37 H 1.08997 * 109.47426 * 60.00323 * 11 9 8 38 38 H 1.09004 * 109.47237 * 299.99638 * 11 9 8 39 39 H 0.96997 * 119.99910 * 354.72326 * 17 16 14 40 40 H 1.08007 * 119.99790 * 359.97438 * 23 22 12 41 41 H 1.08004 * 120.00499 * 180.23296 * 24 23 22 42 42 H 1.08002 * 119.99679 * 179.83680 * 25 24 23 43 43 H 1.07995 * 119.99385 * 179.97438 * 26 25 24 44 44 H 1.08000 * 119.99707 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9938 1.3319 1.1314 5 6 3.7790 2.4087 1.3329 6 8 3.7152 3.3555 0.5777 7 6 4.7355 2.4364 2.4972 8 7 5.4681 3.7051 2.4970 9 6 6.3841 3.9544 3.4537 10 8 6.6022 3.1282 4.3144 11 6 7.1381 5.2592 3.4533 12 6 8.1091 5.2875 4.6353 13 1 8.7452 4.4029 4.6044 14 6 7.3299 5.3009 5.9252 15 1 6.3524 5.7588 5.9609 16 6 7.8649 4.7287 7.0598 17 7 9.1035 4.2868 7.0519 18 14 6.8304 4.5811 8.6082 19 1 7.6311 3.9343 9.6787 20 1 6.4094 5.9339 9.0531 21 1 5.6282 3.7571 8.3236 22 6 8.9652 6.5250 4.5528 23 6 8.3856 7.7751 4.6636 24 6 9.1713 8.9101 4.5918 25 6 10.5356 8.7953 4.4008 26 6 11.1145 7.5453 4.2847 27 6 10.3292 6.4103 4.3604 28 1 -0.5400 -0.9353 -0.0004 29 1 -0.5400 0.9353 -0.0004 30 1 1.8500 -0.9353 0.0004 31 1 1.3586 2.1316 0.0895 32 1 2.6214 1.4026 -0.9314 33 1 3.0451 0.5745 1.7352 34 1 5.4402 1.6096 2.4083 35 1 4.1774 2.3397 3.4283 36 1 5.2934 4.3661 1.8089 37 1 6.4335 6.0861 3.5416 38 1 7.6968 5.3557 2.5223 39 1 9.6155 4.2931 6.2281 40 1 7.3191 7.8649 4.8091 41 1 8.7189 9.8867 4.6822 42 1 11.1491 9.6822 4.3420 43 1 12.1802 7.4557 4.1351 44 1 10.7816 5.4337 4.2701 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356638027.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:53:09 Heat of formation + Delta-G solvation = -34.960671 kcal Electronic energy + Delta-G solvation = -25275.368429 eV Core-core repulsion = 21578.818268 eV Total energy + Delta-G solvation = -3696.550161 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.14790 -38.97232 -38.18640 -36.20385 -34.46538 -33.77171 -33.16860 -31.33504 -30.08491 -29.43569 -28.07899 -25.89051 -24.54734 -22.80613 -21.65264 -21.05501 -20.38668 -20.20784 -19.53459 -17.61165 -16.77938 -16.69286 -16.18989 -16.03685 -15.68450 -15.30275 -15.04614 -14.46820 -14.24510 -14.02011 -13.73932 -13.63483 -13.45287 -13.18228 -12.82687 -12.73285 -12.50202 -12.28780 -12.11098 -11.82593 -11.62609 -11.42975 -10.90578 -10.69422 -10.42812 -10.40572 -10.12493 -10.03141 -9.94072 -9.63250 -9.40032 -9.09630 -8.71955 -8.59265 -8.25019 -8.11136 -7.61028 -6.21622 -3.89018 1.60070 2.21956 2.27449 2.36197 2.89414 3.44130 3.51099 3.56029 3.71661 3.76104 4.30571 4.53533 4.62409 4.62780 4.69400 5.10146 5.31558 5.33819 5.36656 5.39709 5.48977 5.62213 5.66079 5.75798 5.79515 5.97429 6.04001 6.04841 6.12006 6.19809 6.21938 6.34484 6.45232 6.68040 6.74882 6.81708 6.95793 7.15979 7.22623 7.25240 7.40779 7.74540 7.88300 7.88698 8.02868 8.25061 8.52753 8.96090 9.00500 9.80265 11.18747 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.014313 B = 0.002897 C = 0.002543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1955.745314 B = 9662.862637 C =11007.826252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.178 4.178 3 C 0.146 3.854 4 N -0.727 5.727 5 C 0.511 3.489 6 O -0.537 6.537 7 C 0.104 3.896 8 N -0.739 5.739 9 C 0.517 3.483 10 O -0.501 6.501 11 C -0.116 4.116 12 C 0.072 3.928 13 H 0.051 0.949 14 C -0.568 4.568 15 H 0.045 0.955 16 C 0.032 3.968 17 N -0.906 5.906 18 Si 1.063 2.937 19 H -0.284 1.284 20 H -0.291 1.291 21 H -0.289 1.289 22 C -0.031 4.031 23 C -0.108 4.108 24 C -0.129 4.129 25 C -0.153 4.153 26 C -0.125 4.125 27 C -0.130 4.130 28 H 0.104 0.896 29 H 0.101 0.899 30 H 0.117 0.883 31 H 0.072 0.928 32 H 0.077 0.923 33 H 0.405 0.595 34 H 0.094 0.906 35 H 0.096 0.904 36 H 0.405 0.595 37 H 0.081 0.919 38 H 0.067 0.933 39 H 0.270 0.730 40 H 0.115 0.885 41 H 0.107 0.893 42 H 0.106 0.894 43 H 0.107 0.893 44 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.149 -4.505 -13.556 18.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.196 4.196 3 C 0.023 3.977 4 N -0.381 5.381 5 C 0.298 3.702 6 O -0.414 6.414 7 C -0.024 4.024 8 N -0.398 5.398 9 C 0.304 3.696 10 O -0.372 6.372 11 C -0.156 4.156 12 C 0.053 3.947 13 H 0.069 0.931 14 C -0.606 4.606 15 H 0.064 0.936 16 C -0.174 4.174 17 N -0.541 5.541 18 Si 0.892 3.108 19 H -0.210 1.210 20 H -0.218 1.218 21 H -0.216 1.216 22 C -0.032 4.032 23 C -0.126 4.126 24 C -0.148 4.148 25 C -0.171 4.171 26 C -0.143 4.143 27 C -0.148 4.148 28 H 0.122 0.878 29 H 0.119 0.881 30 H 0.135 0.865 31 H 0.091 0.909 32 H 0.095 0.905 33 H 0.240 0.760 34 H 0.112 0.888 35 H 0.114 0.886 36 H 0.241 0.759 37 H 0.099 0.901 38 H 0.085 0.915 39 H 0.081 0.919 40 H 0.133 0.867 41 H 0.125 0.875 42 H 0.124 0.876 43 H 0.125 0.875 44 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -10.959 -4.906 -11.854 16.873 hybrid contribution -0.245 0.367 -1.584 1.644 sum -11.204 -4.539 -13.438 18.075 Atomic orbital electron populations 1.24001 0.95785 1.02507 0.97940 1.23012 0.96270 0.98103 1.02239 1.20421 0.91798 0.95674 0.89774 1.45906 1.40985 1.20137 1.31024 1.20805 0.80862 0.82200 0.86348 1.90692 1.68146 1.35290 1.47230 1.20910 0.94678 0.90221 0.96587 1.45966 1.42447 1.18604 1.32767 1.20900 0.78953 0.89848 0.79924 1.90748 1.64114 1.47269 1.35090 1.21678 0.99214 0.93941 1.00757 1.17869 0.92433 0.91275 0.93102 0.93051 1.21539 1.03577 1.40526 0.94936 0.93639 1.25582 0.96752 0.93143 1.01886 1.70756 1.08164 1.45020 1.30199 0.83636 0.75215 0.76170 0.75730 1.20973 1.21773 1.21566 1.20814 0.93956 0.96779 0.91626 1.20921 0.99712 0.91941 0.99994 1.21012 0.94047 0.97977 1.01722 1.20824 0.95020 0.96734 1.04530 1.20959 0.98762 0.92986 1.01564 1.21059 0.94164 0.97774 1.01782 0.87797 0.88119 0.86544 0.90941 0.90525 0.75997 0.88795 0.88641 0.75872 0.90090 0.91460 0.91864 0.86717 0.87454 0.87603 0.87479 0.87169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.85 14.32 29.01 0.42 -0.43 16 2 C -0.18 -1.02 9.63 -36.02 -0.35 -1.36 16 3 C 0.15 1.14 6.11 -5.19 -0.03 1.11 16 4 N -0.73 -6.22 5.55 -61.47 -0.34 -6.56 16 5 C 0.51 6.11 7.90 -10.98 -0.09 6.03 16 6 O -0.54 -8.11 15.67 5.56 0.09 -8.02 16 7 C 0.10 1.35 6.15 -5.19 -0.03 1.32 16 8 N -0.74 -11.72 5.53 -61.47 -0.34 -12.06 16 9 C 0.52 10.39 7.58 -10.99 -0.08 10.31 16 10 O -0.50 -12.24 15.02 5.55 0.08 -12.16 16 11 C -0.12 -2.29 4.94 -27.88 -0.14 -2.43 16 12 C 0.07 1.74 1.31 -92.92 -0.12 1.62 16 13 H 0.05 1.38 6.23 -51.93 -0.32 1.06 16 14 C -0.57 -15.48 6.40 -34.44 -0.22 -15.70 16 15 H 0.05 1.24 7.82 -52.49 -0.41 0.83 16 16 C 0.03 0.92 5.45 -17.82 -0.10 0.82 16 17 N -0.91 -27.61 13.63 55.43 0.76 -26.86 16 18 Si 1.06 26.20 29.91 -169.99 -5.08 21.12 16 19 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 20 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 21 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 22 C -0.03 -0.70 4.77 -104.62 -0.50 -1.19 16 23 C -0.11 -2.23 8.88 -39.59 -0.35 -2.58 16 24 C -0.13 -2.37 10.05 -39.58 -0.40 -2.77 16 25 C -0.15 -2.70 10.05 -39.58 -0.40 -3.09 16 26 C -0.12 -2.32 10.05 -39.59 -0.40 -2.71 16 27 C -0.13 -2.74 9.67 -39.59 -0.38 -3.12 16 28 H 0.10 0.41 8.06 -52.49 -0.42 -0.02 16 29 H 0.10 0.50 7.84 -52.49 -0.41 0.09 16 30 H 0.12 0.54 8.06 -52.48 -0.42 0.12 16 31 H 0.07 0.62 7.79 -51.93 -0.40 0.21 16 32 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.41 2.47 8.46 -40.82 -0.35 2.13 16 34 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 36 H 0.40 5.96 7.44 -40.82 -0.30 5.66 16 37 H 0.08 1.52 7.87 -51.93 -0.41 1.11 16 38 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 39 H 0.27 8.14 6.68 -40.82 -0.27 7.87 16 40 H 0.11 2.32 7.80 -52.48 -0.41 1.91 16 41 H 0.11 1.66 8.06 -52.48 -0.42 1.24 16 42 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 43 H 0.11 1.70 8.06 -52.49 -0.42 1.27 16 44 H 0.11 2.29 7.95 -52.49 -0.42 1.87 16 LS Contribution 378.63 15.07 5.71 5.71 Total: -1.00 -35.04 378.63 -8.61 -43.65 By element: Atomic # 1 Polarization: 15.68 SS G_CDS: -6.31 Total: 9.37 kcal Atomic # 6 Polarization: -11.01 SS G_CDS: -3.17 Total: -14.18 kcal Atomic # 7 Polarization: -45.55 SS G_CDS: 0.07 Total: -45.48 kcal Atomic # 8 Polarization: -20.35 SS G_CDS: 0.17 Total: -20.18 kcal Atomic # 14 Polarization: 26.20 SS G_CDS: -5.08 Total: 21.12 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -35.04 -8.61 -43.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356638027.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.685 kcal (2) G-P(sol) polarization free energy of solvation -35.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds