Wall clock time and date at job start Tue Mar 31 2020 11:53:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50706 * 120.00103 * 2 1 4 4 N 1.46498 * 109.47046 * 124.99758 * 3 2 1 5 5 C 1.34783 * 119.99884 * 179.97438 * 4 3 2 6 6 O 1.21278 * 119.99543 * 0.02562 * 5 4 3 7 7 C 1.50703 * 119.99638 * 179.97438 * 5 4 3 8 8 N 1.46506 * 109.46523 * 180.02562 * 7 5 4 9 9 C 1.34773 * 119.99707 * 179.97438 * 8 7 5 10 10 O 1.21284 * 120.00085 * 0.02562 * 9 8 7 11 11 C 1.50697 * 119.99804 * 179.97438 * 9 8 7 12 12 C 1.53001 * 109.47066 * 180.02562 * 11 9 8 13 13 H 1.08997 * 109.47486 * 54.05268 * 12 11 9 14 14 C 1.50698 * 109.46901 * 294.05498 * 12 11 9 15 15 H 1.08002 * 120.00397 * 330.08136 * 14 12 11 16 16 C 1.37877 * 119.99983 * 150.08139 * 14 12 11 17 17 N 1.31513 * 120.00147 * 6.55933 * 16 14 12 18 18 Si 1.86806 * 120.00054 * 186.55449 * 16 14 12 19 19 H 1.48501 * 109.47229 * 179.97438 * 18 16 14 20 20 H 1.48498 * 109.47340 * 300.00345 * 18 16 14 21 21 H 1.48505 * 109.46728 * 60.00313 * 18 16 14 22 22 C 1.50704 * 109.47322 * 174.05774 * 12 11 9 23 23 C 1.38232 * 120.00156 * 64.30019 * 22 12 11 24 24 C 1.38227 * 120.00423 * 179.81276 * 23 22 12 25 25 C 1.38243 * 119.99751 * 0.39675 * 24 23 22 26 26 C 1.38236 * 119.99618 * 359.85625 * 25 24 23 27 27 C 1.38229 * 120.00074 * 359.95579 * 26 25 24 28 28 H 1.08000 * 119.99783 * 179.97438 * 1 2 3 29 29 H 1.07995 * 119.99981 * 0.02562 * 1 2 3 30 30 H 1.08004 * 120.00077 * 179.97438 * 2 1 3 31 31 H 1.08997 * 109.46866 * 4.99574 * 3 2 1 32 32 H 1.09002 * 109.46876 * 244.99960 * 3 2 1 33 33 H 0.96997 * 120.00490 * 0.02562 * 4 3 2 34 34 H 1.08999 * 109.47241 * 60.00948 * 7 5 4 35 35 H 1.08992 * 109.47528 * 299.99979 * 7 5 4 36 36 H 0.97001 * 120.00254 * 0.02562 * 8 7 5 37 37 H 1.08997 * 109.47426 * 60.00323 * 11 9 8 38 38 H 1.09004 * 109.47237 * 299.99638 * 11 9 8 39 39 H 0.96997 * 119.99910 * 354.72326 * 17 16 14 40 40 H 1.08007 * 119.99790 * 359.97438 * 23 22 12 41 41 H 1.08004 * 120.00499 * 180.23296 * 24 23 22 42 42 H 1.08002 * 119.99679 * 179.83680 * 25 24 23 43 43 H 1.07995 * 119.99385 * 179.97438 * 26 25 24 44 44 H 1.08000 * 119.99707 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9938 1.3319 1.1314 5 6 3.7790 2.4087 1.3329 6 8 3.7152 3.3555 0.5777 7 6 4.7355 2.4364 2.4972 8 7 5.4681 3.7051 2.4970 9 6 6.3841 3.9544 3.4537 10 8 6.6022 3.1282 4.3144 11 6 7.1381 5.2592 3.4533 12 6 8.1091 5.2875 4.6353 13 1 8.7452 4.4029 4.6044 14 6 7.3299 5.3009 5.9252 15 1 6.3524 5.7588 5.9609 16 6 7.8649 4.7287 7.0598 17 7 9.1035 4.2868 7.0519 18 14 6.8304 4.5811 8.6082 19 1 7.6311 3.9343 9.6787 20 1 6.4094 5.9339 9.0531 21 1 5.6282 3.7571 8.3236 22 6 8.9652 6.5250 4.5528 23 6 8.3856 7.7751 4.6636 24 6 9.1713 8.9101 4.5918 25 6 10.5356 8.7953 4.4008 26 6 11.1145 7.5453 4.2847 27 6 10.3292 6.4103 4.3604 28 1 -0.5400 -0.9353 -0.0004 29 1 -0.5400 0.9353 -0.0004 30 1 1.8500 -0.9353 0.0004 31 1 1.3586 2.1316 0.0895 32 1 2.6214 1.4026 -0.9314 33 1 3.0451 0.5745 1.7352 34 1 5.4402 1.6096 2.4083 35 1 4.1774 2.3397 3.4283 36 1 5.2934 4.3661 1.8089 37 1 6.4335 6.0861 3.5416 38 1 7.6968 5.3557 2.5223 39 1 9.6155 4.2931 6.2281 40 1 7.3191 7.8649 4.8091 41 1 8.7189 9.8867 4.6822 42 1 11.1491 9.6822 4.3420 43 1 12.1802 7.4557 4.1351 44 1 10.7816 5.4337 4.2701 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356638027.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:53:08 Heat of formation + Delta-G solvation = -58.859178 kcal Electronic energy + Delta-G solvation = -25276.404746 eV Core-core repulsion = 21578.818268 eV Total energy + Delta-G solvation = -3697.586478 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.27988 -40.46046 -39.70573 -36.95805 -36.19236 -35.28492 -33.85533 -33.27642 -31.60303 -30.86529 -29.29568 -27.13058 -26.10243 -24.50878 -23.19442 -21.95783 -21.76094 -21.22561 -20.88594 -18.98246 -18.43984 -17.81075 -17.48784 -17.13704 -16.95334 -16.49973 -16.38539 -15.74243 -15.63508 -15.60066 -15.39541 -14.84905 -14.62058 -14.37256 -14.09932 -14.02769 -13.96137 -13.76526 -13.44181 -13.31276 -13.11554 -12.66840 -12.57103 -12.08094 -12.06498 -11.93332 -11.72184 -11.47390 -11.31087 -10.82542 -10.61991 -10.60188 -10.32152 -10.19861 -10.04865 -9.63458 -9.26540 -8.43216 -6.09118 0.68574 0.74482 1.11571 1.38341 1.50432 1.60917 1.76461 1.83651 1.94544 2.54915 2.63411 3.11517 3.40039 3.60890 3.83466 4.06802 4.13370 4.14114 4.28116 4.28923 4.30989 4.38209 4.44745 4.49607 4.53738 4.63780 4.71141 4.83392 4.87279 4.97904 5.08526 5.22791 5.24175 5.38777 5.41357 5.44549 5.63211 5.74707 5.75173 5.83010 5.95892 6.25284 6.31848 6.34821 6.40449 6.60596 6.80043 7.01220 7.42492 7.66692 8.97154 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.014313 B = 0.002897 C = 0.002543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1955.745314 B = 9662.862637 C =11007.826252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.184 4.184 3 C 0.145 3.855 4 N -0.710 5.710 5 C 0.518 3.482 6 O -0.571 6.571 7 C 0.100 3.900 8 N -0.723 5.723 9 C 0.518 3.482 10 O -0.552 6.552 11 C -0.112 4.112 12 C 0.075 3.925 13 H 0.011 0.989 14 C -0.560 4.560 15 H 0.039 0.961 16 C -0.024 4.024 17 N -0.941 5.941 18 Si 1.100 2.900 19 H -0.289 1.289 20 H -0.270 1.270 21 H -0.282 1.282 22 C -0.056 4.056 23 C -0.124 4.124 24 C -0.125 4.125 25 C -0.145 4.145 26 C -0.125 4.125 27 C -0.152 4.152 28 H 0.120 0.880 29 H 0.100 0.900 30 H 0.130 0.870 31 H 0.065 0.935 32 H 0.071 0.929 33 H 0.419 0.581 34 H 0.104 0.896 35 H 0.100 0.900 36 H 0.413 0.587 37 H 0.094 0.906 38 H 0.091 0.909 39 H 0.258 0.742 40 H 0.113 0.887 41 H 0.142 0.858 42 H 0.147 0.853 43 H 0.135 0.865 44 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.188 -3.223 -14.433 19.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.202 4.202 3 C 0.022 3.978 4 N -0.362 5.362 5 C 0.304 3.696 6 O -0.450 6.450 7 C -0.027 4.027 8 N -0.381 5.381 9 C 0.305 3.695 10 O -0.428 6.428 11 C -0.152 4.152 12 C 0.056 3.944 13 H 0.029 0.971 14 C -0.598 4.598 15 H 0.058 0.942 16 C -0.223 4.223 17 N -0.579 5.579 18 Si 0.925 3.075 19 H -0.215 1.215 20 H -0.196 1.196 21 H -0.208 1.208 22 C -0.057 4.057 23 C -0.142 4.142 24 C -0.143 4.143 25 C -0.163 4.163 26 C -0.143 4.143 27 C -0.170 4.170 28 H 0.138 0.862 29 H 0.118 0.882 30 H 0.148 0.852 31 H 0.083 0.917 32 H 0.089 0.911 33 H 0.256 0.744 34 H 0.122 0.878 35 H 0.118 0.882 36 H 0.251 0.749 37 H 0.113 0.887 38 H 0.109 0.891 39 H 0.068 0.932 40 H 0.131 0.869 41 H 0.160 0.840 42 H 0.164 0.836 43 H 0.153 0.847 44 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -12.052 -3.635 -12.779 17.938 hybrid contribution 0.035 -0.003 -1.457 1.458 sum -12.017 -3.638 -14.236 18.982 Atomic orbital electron populations 1.24189 0.95669 1.03303 0.96483 1.22952 0.96399 0.97398 1.03452 1.20490 0.91454 0.96839 0.88976 1.45810 1.39792 1.19445 1.31189 1.20521 0.80934 0.82579 0.85563 1.90681 1.69337 1.36717 1.48289 1.21070 0.95072 0.89009 0.97520 1.45738 1.41124 1.19755 1.31462 1.20901 0.79297 0.89359 0.79911 1.90729 1.65968 1.48739 1.37408 1.21587 0.98966 0.94486 1.00188 1.17693 0.92570 0.90735 0.93437 0.97121 1.21796 1.03192 1.38732 0.96039 0.94245 1.26762 0.97103 0.93291 1.05095 1.70850 1.09351 1.47972 1.29731 0.83150 0.74162 0.77177 0.73016 1.21454 1.19580 1.20795 1.20636 0.94332 0.96620 0.94112 1.21007 1.00073 0.92164 1.00936 1.21405 0.94389 0.98547 0.99961 1.21309 0.95182 0.97609 1.02152 1.21300 1.00050 0.92556 1.00389 1.21128 0.94204 0.98477 1.03225 0.86201 0.88190 0.85190 0.91682 0.91104 0.74380 0.87808 0.88229 0.74940 0.88738 0.89123 0.93166 0.86899 0.84018 0.83569 0.84680 0.88524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.31 14.32 67.78 0.97 -0.34 16 2 C -0.18 -1.76 9.63 25.65 0.25 -1.51 16 3 C 0.15 2.10 6.11 85.64 0.52 2.63 16 4 N -0.71 -11.24 5.55 -466.78 -2.59 -13.83 16 5 C 0.52 11.97 7.90 87.66 0.69 12.66 16 6 O -0.57 -16.94 15.67 -3.02 -0.05 -16.99 16 7 C 0.10 2.58 6.15 85.63 0.53 3.10 16 8 N -0.72 -22.86 5.53 -466.79 -2.58 -25.44 16 9 C 0.52 21.24 7.58 87.66 0.66 21.91 16 10 O -0.55 -28.03 15.02 -3.04 -0.05 -28.08 16 11 C -0.11 -4.52 4.94 29.85 0.15 -4.37 16 12 C 0.07 3.74 1.31 -12.29 -0.02 3.72 16 13 H 0.01 0.61 6.23 -2.39 -0.01 0.59 16 14 C -0.56 -31.34 6.40 25.60 0.16 -31.18 16 15 H 0.04 2.19 7.82 -2.91 -0.02 2.17 16 16 C -0.02 -1.43 5.45 84.65 0.46 -0.96 16 17 N -0.94 -59.81 13.63 21.45 0.29 -59.52 16 18 Si 1.10 53.71 29.91 68.60 2.05 55.76 16 19 H -0.29 -14.18 7.11 99.48 0.71 -13.48 16 20 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 21 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 22 C -0.06 -2.57 4.77 -19.87 -0.09 -2.66 16 23 C -0.12 -5.01 8.88 22.27 0.20 -4.82 16 24 C -0.13 -4.20 10.05 22.27 0.22 -3.98 16 25 C -0.14 -4.57 10.05 22.27 0.22 -4.35 16 26 C -0.13 -4.41 10.05 22.27 0.22 -4.19 16 27 C -0.15 -6.53 9.67 22.27 0.22 -6.31 16 28 H 0.12 0.63 8.06 -2.91 -0.02 0.61 16 29 H 0.10 0.84 7.84 -2.91 -0.02 0.81 16 30 H 0.13 0.91 8.06 -2.91 -0.02 0.88 16 31 H 0.06 1.06 7.79 -2.39 -0.02 1.04 16 32 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.42 4.40 8.46 -92.71 -0.78 3.62 16 34 H 0.10 2.50 8.14 -2.39 -0.02 2.48 16 35 H 0.10 2.53 8.14 -2.39 -0.02 2.51 16 36 H 0.41 11.93 7.44 -92.71 -0.69 11.25 16 37 H 0.09 3.52 7.87 -2.39 -0.02 3.50 16 38 H 0.09 3.18 8.14 -2.38 -0.02 3.16 16 39 H 0.26 16.51 6.68 -92.71 -0.62 15.89 16 40 H 0.11 4.50 7.80 -2.91 -0.02 4.47 16 41 H 0.14 3.75 8.06 -2.91 -0.02 3.72 16 42 H 0.15 3.47 8.06 -2.91 -0.02 3.45 16 43 H 0.14 3.92 8.06 -2.91 -0.02 3.90 16 44 H 0.10 4.27 7.95 -2.91 -0.02 4.25 16 Total: -1.00 -78.91 378.63 2.14 -76.77 By element: Atomic # 1 Polarization: 32.28 SS G_CDS: -0.31 Total: 31.96 kcal Atomic # 6 Polarization: -26.01 SS G_CDS: 5.37 Total: -20.64 kcal Atomic # 7 Polarization: -93.91 SS G_CDS: -4.88 Total: -98.79 kcal Atomic # 8 Polarization: -44.97 SS G_CDS: -0.09 Total: -45.06 kcal Atomic # 14 Polarization: 53.71 SS G_CDS: 2.05 Total: 55.76 kcal Total: -78.91 2.14 -76.77 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356638027.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.908 kcal (2) G-P(sol) polarization free energy of solvation -78.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds