Wall clock time and date at job start Tue Mar 31 2020 11:53:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50705 * 120.00269 * 2 1 4 4 N 1.46499 * 109.47060 * 124.99537 * 3 2 1 5 5 C 1.34777 * 120.00014 * 179.97438 * 4 3 2 6 6 O 1.21284 * 119.99581 * 0.02562 * 5 4 3 7 7 C 1.50697 * 120.00369 * 180.02562 * 5 4 3 8 8 N 1.46502 * 109.47038 * 179.97438 * 7 5 4 9 9 C 1.34777 * 119.99559 * 179.97438 * 8 7 5 10 10 O 1.21283 * 120.00046 * 0.02562 * 9 8 7 11 11 C 1.50698 * 119.99686 * 180.02562 * 9 8 7 12 12 C 1.53005 * 109.46990 * 180.02562 * 11 9 8 13 13 H 1.08994 * 109.46934 * 305.97546 * 12 11 9 14 14 C 1.50700 * 109.47299 * 65.97885 * 12 11 9 15 15 H 1.08008 * 119.99531 * 26.90748 * 14 12 11 16 16 C 1.37869 * 120.00160 * 206.90965 * 14 12 11 17 17 N 1.31508 * 120.00032 * 353.27812 * 16 14 12 18 18 Si 1.86806 * 120.00073 * 173.54969 * 16 14 12 19 19 H 1.48497 * 109.46895 * 179.72442 * 18 16 14 20 20 H 1.48495 * 109.46957 * 299.72695 * 18 16 14 21 21 H 1.48501 * 109.46761 * 59.72686 * 18 16 14 22 22 C 1.50705 * 109.47056 * 185.97689 * 12 11 9 23 23 C 1.38237 * 120.00118 * 294.44966 * 22 12 11 24 24 C 1.38237 * 119.99818 * 179.78603 * 23 22 12 25 25 C 1.38236 * 120.00003 * 0.44191 * 24 23 22 26 26 C 1.38236 * 119.99991 * 359.81061 * 25 24 23 27 27 C 1.38228 * 119.99825 * 114.71859 * 22 12 11 28 28 H 1.08001 * 119.99830 * 359.97438 * 1 2 3 29 29 H 1.07997 * 120.00410 * 180.02562 * 1 2 3 30 30 H 1.07999 * 120.00222 * 179.97438 * 2 1 3 31 31 H 1.08998 * 109.46832 * 4.99895 * 3 2 1 32 32 H 1.08992 * 109.46930 * 245.00072 * 3 2 1 33 33 H 0.96995 * 120.00419 * 0.02562 * 4 3 2 34 34 H 1.08998 * 109.46916 * 60.00470 * 7 5 4 35 35 H 1.08995 * 109.46698 * 300.00204 * 7 5 4 36 36 H 0.97002 * 120.00062 * 0.02562 * 8 7 5 37 37 H 1.09000 * 109.47229 * 60.00363 * 11 9 8 38 38 H 1.09003 * 109.47630 * 300.00294 * 11 9 8 39 39 H 0.97008 * 120.00303 * 354.69126 * 17 16 14 40 40 H 1.08005 * 119.99967 * 359.97438 * 23 22 12 41 41 H 1.07999 * 119.99448 * 180.27078 * 24 23 22 42 42 H 1.07997 * 119.99991 * 179.83259 * 25 24 23 43 43 H 1.07993 * 119.99965 * 180.02562 * 26 25 24 44 44 H 1.07999 * 120.00249 * 359.97438 * 27 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9937 1.3319 1.1315 5 6 3.7790 2.4086 1.3329 6 8 3.7152 3.3554 0.5777 7 6 4.7363 2.4360 2.4965 8 7 5.4696 3.7042 2.4958 9 6 6.3864 3.9530 3.4519 10 8 6.6046 3.1268 4.3125 11 6 7.1403 5.2578 3.4515 12 6 8.1123 5.2856 4.6328 13 1 7.5687 5.0825 5.5554 14 6 9.1746 4.2353 4.4340 15 1 9.4416 3.9194 3.4363 16 6 9.8056 3.6777 5.5257 17 7 9.5779 4.1531 6.7305 18 14 10.9898 2.2519 5.2926 19 1 11.5361 1.8417 6.6111 20 1 10.2715 1.1076 4.6766 21 1 12.1032 2.6733 4.4049 22 6 8.7590 6.6441 4.7195 23 6 9.6002 7.0748 3.7106 24 6 10.1898 8.3227 3.7880 25 6 9.9456 9.1361 4.8786 26 6 9.1085 8.7033 5.8900 27 6 8.5154 7.4571 5.8105 28 1 -0.5400 0.9353 0.0004 29 1 -0.5401 -0.9352 0.0004 30 1 1.8500 -0.9353 0.0004 31 1 1.3586 2.1316 0.0895 32 1 2.6213 1.4026 -0.9313 33 1 3.0450 0.5745 1.7352 34 1 5.4410 1.6093 2.4067 35 1 4.1787 2.3387 3.4280 36 1 5.2948 4.3652 1.8077 37 1 6.4357 6.0847 3.5409 38 1 7.6981 5.3550 2.5201 39 1 9.0272 4.9436 6.8440 40 1 9.7942 6.4375 2.8604 41 1 10.8435 8.6609 2.9976 42 1 10.4084 10.1099 4.9404 43 1 8.9174 9.3389 6.7419 44 1 7.8613 7.1190 6.6006 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356638029.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:53:13 Heat of formation + Delta-G solvation = -35.612773 kcal Electronic energy + Delta-G solvation = -25270.678548 eV Core-core repulsion = 21574.100109 eV Total energy + Delta-G solvation = -3696.578438 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.14922 -38.97662 -38.19296 -36.20601 -34.46359 -33.77676 -33.17146 -31.32865 -30.08717 -29.43961 -28.09161 -25.89683 -24.55005 -22.80643 -21.64856 -21.05674 -20.38619 -20.20593 -19.52470 -17.61214 -16.79841 -16.70235 -16.11939 -16.09787 -15.70833 -15.37081 -14.84653 -14.67385 -14.15219 -14.01871 -13.76435 -13.64243 -13.44983 -13.16989 -12.83427 -12.73130 -12.50218 -12.30956 -12.07286 -11.82730 -11.62901 -11.43712 -10.88517 -10.70870 -10.43024 -10.40914 -10.11669 -10.02835 -9.94299 -9.66434 -9.40181 -9.10449 -8.71547 -8.59387 -8.26844 -8.11274 -7.61648 -6.20722 -3.89507 1.59761 2.21667 2.26898 2.36039 2.89268 3.43856 3.51287 3.55845 3.72052 3.75882 4.30309 4.53463 4.62217 4.62825 4.70037 5.09922 5.31742 5.32966 5.37293 5.38862 5.47744 5.62036 5.65988 5.75099 5.79346 5.97165 6.03924 6.04586 6.11667 6.19561 6.21709 6.34468 6.44986 6.67673 6.74573 6.81393 6.95280 7.15866 7.23167 7.25274 7.40343 7.75201 7.88112 7.88469 8.02530 8.25063 8.53574 8.95630 9.00019 9.79347 11.18716 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.014461 B = 0.002876 C = 0.002528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1935.728652 B = 9734.172181 C =11072.403018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.177 4.177 3 C 0.146 3.854 4 N -0.727 5.727 5 C 0.511 3.489 6 O -0.537 6.537 7 C 0.104 3.896 8 N -0.739 5.739 9 C 0.516 3.484 10 O -0.500 6.500 11 C -0.115 4.115 12 C 0.073 3.927 13 H 0.050 0.950 14 C -0.567 4.567 15 H 0.045 0.955 16 C 0.031 3.969 17 N -0.907 5.907 18 Si 1.061 2.939 19 H -0.284 1.284 20 H -0.289 1.289 21 H -0.291 1.291 22 C -0.033 4.033 23 C -0.106 4.106 24 C -0.130 4.130 25 C -0.152 4.152 26 C -0.125 4.125 27 C -0.130 4.130 28 H 0.100 0.900 29 H 0.104 0.896 30 H 0.117 0.883 31 H 0.072 0.928 32 H 0.077 0.923 33 H 0.405 0.595 34 H 0.096 0.904 35 H 0.094 0.906 36 H 0.405 0.595 37 H 0.067 0.933 38 H 0.081 0.919 39 H 0.271 0.729 40 H 0.115 0.885 41 H 0.107 0.893 42 H 0.106 0.894 43 H 0.107 0.893 44 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.026 -2.878 -11.278 18.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.196 4.196 3 C 0.023 3.977 4 N -0.380 5.380 5 C 0.298 3.702 6 O -0.414 6.414 7 C -0.024 4.024 8 N -0.398 5.398 9 C 0.303 3.697 10 O -0.372 6.372 11 C -0.155 4.155 12 C 0.054 3.946 13 H 0.068 0.932 14 C -0.605 4.605 15 H 0.064 0.936 16 C -0.174 4.174 17 N -0.542 5.542 18 Si 0.890 3.110 19 H -0.210 1.210 20 H -0.215 1.215 21 H -0.218 1.218 22 C -0.034 4.034 23 C -0.124 4.124 24 C -0.148 4.148 25 C -0.170 4.170 26 C -0.143 4.143 27 C -0.148 4.148 28 H 0.119 0.881 29 H 0.122 0.878 30 H 0.135 0.865 31 H 0.090 0.910 32 H 0.095 0.905 33 H 0.240 0.760 34 H 0.114 0.886 35 H 0.112 0.888 36 H 0.241 0.759 37 H 0.086 0.914 38 H 0.099 0.901 39 H 0.082 0.918 40 H 0.133 0.867 41 H 0.126 0.874 42 H 0.124 0.876 43 H 0.125 0.875 44 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -12.938 -3.888 -10.341 17.013 hybrid contribution -0.949 0.887 -0.957 1.614 sum -13.887 -3.001 -11.299 18.152 Atomic orbital electron populations 1.23995 0.95779 1.02492 0.98016 1.23015 0.96269 0.98128 1.02168 1.20420 0.91787 0.95651 0.89813 1.45903 1.40993 1.20129 1.31020 1.20804 0.80817 0.82213 0.86384 1.90694 1.68117 1.35335 1.47219 1.20909 0.94641 0.90400 0.96447 1.45964 1.42216 1.18614 1.32991 1.20901 0.78394 0.89982 0.80382 1.90749 1.62956 1.47166 1.36301 1.21654 0.98234 0.92789 1.02820 1.17870 0.93540 0.89332 0.93883 0.93195 1.21543 1.22027 1.22213 0.94712 0.93644 1.25576 0.98314 1.00863 0.92647 1.70730 1.37044 1.23376 1.23029 0.83676 0.75681 0.76046 0.75594 1.20972 1.21549 1.21752 1.20844 0.94905 0.95297 0.92364 1.20933 0.97059 0.94818 0.99584 1.21017 1.00487 0.95224 0.98094 1.20825 1.01063 0.99556 0.95583 1.20961 0.98467 0.96571 0.98310 1.21069 1.01073 0.93993 0.98659 0.88138 0.87799 0.86524 0.90956 0.90500 0.75995 0.88626 0.88799 0.75867 0.91419 0.90062 0.91775 0.86653 0.87448 0.87597 0.87463 0.87150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.83 14.32 29.02 0.42 -0.42 16 2 C -0.18 -1.01 9.63 -36.02 -0.35 -1.36 16 3 C 0.15 1.14 6.11 -5.19 -0.03 1.11 16 4 N -0.73 -6.20 5.55 -61.47 -0.34 -6.54 16 5 C 0.51 6.10 7.90 -10.99 -0.09 6.01 16 6 O -0.54 -8.10 15.67 5.55 0.09 -8.01 16 7 C 0.10 1.35 6.15 -5.19 -0.03 1.32 16 8 N -0.74 -11.71 5.53 -61.47 -0.34 -12.05 16 9 C 0.52 10.38 7.58 -10.99 -0.08 10.30 16 10 O -0.50 -12.24 15.02 5.55 0.08 -12.16 16 11 C -0.11 -2.28 4.95 -27.88 -0.14 -2.41 16 12 C 0.07 1.76 1.23 -92.92 -0.11 1.64 16 13 H 0.05 1.35 6.59 -51.93 -0.34 1.01 16 14 C -0.57 -15.47 6.35 -34.44 -0.22 -15.68 16 15 H 0.05 1.24 7.82 -52.48 -0.41 0.83 16 16 C 0.03 0.91 5.45 -17.83 -0.10 0.81 16 17 N -0.91 -27.68 13.56 55.43 0.75 -26.93 16 18 Si 1.06 26.17 29.91 -169.99 -5.08 21.08 16 19 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 20 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 21 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 22 C -0.03 -0.75 4.53 -104.62 -0.47 -1.22 16 23 C -0.11 -2.20 8.90 -39.58 -0.35 -2.55 16 24 C -0.13 -2.38 10.05 -39.58 -0.40 -2.78 16 25 C -0.15 -2.68 10.05 -39.58 -0.40 -3.08 16 26 C -0.12 -2.32 10.05 -39.58 -0.40 -2.72 16 27 C -0.13 -2.73 9.18 -39.58 -0.36 -3.10 16 28 H 0.10 0.49 7.84 -52.49 -0.41 0.08 16 29 H 0.10 0.40 8.06 -52.49 -0.42 -0.02 16 30 H 0.12 0.55 8.06 -52.49 -0.42 0.13 16 31 H 0.07 0.61 7.79 -51.93 -0.40 0.20 16 32 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.41 2.46 8.46 -40.82 -0.35 2.12 16 34 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 35 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 36 H 0.40 5.95 7.44 -40.82 -0.30 5.65 16 37 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 38 H 0.08 1.52 7.96 -51.93 -0.41 1.11 16 39 H 0.27 8.15 6.24 -40.82 -0.25 7.89 16 40 H 0.12 2.34 7.85 -52.48 -0.41 1.93 16 41 H 0.11 1.66 8.06 -52.49 -0.42 1.24 16 42 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 43 H 0.11 1.69 8.06 -52.49 -0.42 1.27 16 44 H 0.11 2.29 7.95 -52.49 -0.42 1.87 16 LS Contribution 377.78 15.07 5.69 5.69 Total: -1.00 -35.13 377.78 -8.58 -43.71 By element: Atomic # 1 Polarization: 15.64 SS G_CDS: -6.32 Total: 9.32 kcal Atomic # 6 Polarization: -11.01 SS G_CDS: -3.12 Total: -14.12 kcal Atomic # 7 Polarization: -45.59 SS G_CDS: 0.07 Total: -45.52 kcal Atomic # 8 Polarization: -20.34 SS G_CDS: 0.17 Total: -20.17 kcal Atomic # 14 Polarization: 26.17 SS G_CDS: -5.08 Total: 21.08 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -35.13 -8.58 -43.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356638029.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.097 kcal (2) G-P(sol) polarization free energy of solvation -35.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds