Wall clock time and date at job start Tue Mar 31 2020 11:53:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50705 * 120.00269 * 2 1 4 4 N 1.46499 * 109.47060 * 124.99537 * 3 2 1 5 5 C 1.34777 * 120.00014 * 179.97438 * 4 3 2 6 6 O 1.21284 * 119.99581 * 0.02562 * 5 4 3 7 7 C 1.50697 * 120.00369 * 180.02562 * 5 4 3 8 8 N 1.46502 * 109.47038 * 179.97438 * 7 5 4 9 9 C 1.34777 * 119.99559 * 179.97438 * 8 7 5 10 10 O 1.21283 * 120.00046 * 0.02562 * 9 8 7 11 11 C 1.50698 * 119.99686 * 180.02562 * 9 8 7 12 12 C 1.53005 * 109.46990 * 180.02562 * 11 9 8 13 13 H 1.08994 * 109.46934 * 305.97546 * 12 11 9 14 14 C 1.50700 * 109.47299 * 65.97885 * 12 11 9 15 15 H 1.08008 * 119.99531 * 26.90748 * 14 12 11 16 16 C 1.37869 * 120.00160 * 206.90965 * 14 12 11 17 17 N 1.31508 * 120.00032 * 353.27812 * 16 14 12 18 18 Si 1.86806 * 120.00073 * 173.54969 * 16 14 12 19 19 H 1.48497 * 109.46895 * 179.72442 * 18 16 14 20 20 H 1.48495 * 109.46957 * 299.72695 * 18 16 14 21 21 H 1.48501 * 109.46761 * 59.72686 * 18 16 14 22 22 C 1.50705 * 109.47056 * 185.97689 * 12 11 9 23 23 C 1.38237 * 120.00118 * 294.44966 * 22 12 11 24 24 C 1.38237 * 119.99818 * 179.78603 * 23 22 12 25 25 C 1.38236 * 120.00003 * 0.44191 * 24 23 22 26 26 C 1.38236 * 119.99991 * 359.81061 * 25 24 23 27 27 C 1.38228 * 119.99825 * 114.71859 * 22 12 11 28 28 H 1.08001 * 119.99830 * 359.97438 * 1 2 3 29 29 H 1.07997 * 120.00410 * 180.02562 * 1 2 3 30 30 H 1.07999 * 120.00222 * 179.97438 * 2 1 3 31 31 H 1.08998 * 109.46832 * 4.99895 * 3 2 1 32 32 H 1.08992 * 109.46930 * 245.00072 * 3 2 1 33 33 H 0.96995 * 120.00419 * 0.02562 * 4 3 2 34 34 H 1.08998 * 109.46916 * 60.00470 * 7 5 4 35 35 H 1.08995 * 109.46698 * 300.00204 * 7 5 4 36 36 H 0.97002 * 120.00062 * 0.02562 * 8 7 5 37 37 H 1.09000 * 109.47229 * 60.00363 * 11 9 8 38 38 H 1.09003 * 109.47630 * 300.00294 * 11 9 8 39 39 H 0.97008 * 120.00303 * 354.69126 * 17 16 14 40 40 H 1.08005 * 119.99967 * 359.97438 * 23 22 12 41 41 H 1.07999 * 119.99448 * 180.27078 * 24 23 22 42 42 H 1.07997 * 119.99991 * 179.83259 * 25 24 23 43 43 H 1.07993 * 119.99965 * 180.02562 * 26 25 24 44 44 H 1.07999 * 120.00249 * 359.97438 * 27 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9937 1.3319 1.1315 5 6 3.7790 2.4086 1.3329 6 8 3.7152 3.3554 0.5777 7 6 4.7363 2.4360 2.4965 8 7 5.4696 3.7042 2.4958 9 6 6.3864 3.9530 3.4519 10 8 6.6046 3.1268 4.3125 11 6 7.1403 5.2578 3.4515 12 6 8.1123 5.2856 4.6328 13 1 7.5687 5.0825 5.5554 14 6 9.1746 4.2353 4.4340 15 1 9.4416 3.9194 3.4363 16 6 9.8056 3.6777 5.5257 17 7 9.5779 4.1531 6.7305 18 14 10.9898 2.2519 5.2926 19 1 11.5361 1.8417 6.6111 20 1 10.2715 1.1076 4.6766 21 1 12.1032 2.6733 4.4049 22 6 8.7590 6.6441 4.7195 23 6 9.6002 7.0748 3.7106 24 6 10.1898 8.3227 3.7880 25 6 9.9456 9.1361 4.8786 26 6 9.1085 8.7033 5.8900 27 6 8.5154 7.4571 5.8105 28 1 -0.5400 0.9353 0.0004 29 1 -0.5401 -0.9352 0.0004 30 1 1.8500 -0.9353 0.0004 31 1 1.3586 2.1316 0.0895 32 1 2.6213 1.4026 -0.9313 33 1 3.0450 0.5745 1.7352 34 1 5.4410 1.6093 2.4067 35 1 4.1787 2.3387 3.4280 36 1 5.2948 4.3652 1.8077 37 1 6.4357 6.0847 3.5409 38 1 7.6981 5.3550 2.5201 39 1 9.0272 4.9436 6.8440 40 1 9.7942 6.4375 2.8604 41 1 10.8435 8.6609 2.9976 42 1 10.4084 10.1099 4.9404 43 1 8.9174 9.3389 6.7419 44 1 7.8613 7.1190 6.6006 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356638029.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:53:13 Heat of formation + Delta-G solvation = -59.605887 kcal Electronic energy + Delta-G solvation = -25271.718967 eV Core-core repulsion = 21574.100109 eV Total energy + Delta-G solvation = -3697.618858 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.28050 -40.46447 -39.71207 -36.95769 -36.19135 -35.28813 -33.85555 -33.27368 -31.60529 -30.87107 -29.30623 -27.13715 -26.10182 -24.50716 -23.19124 -21.95470 -21.75585 -21.22097 -20.88402 -18.99438 -18.46379 -17.81097 -17.48671 -17.11123 -16.96250 -16.64792 -16.14510 -15.89892 -15.63318 -15.62134 -15.32232 -14.84579 -14.64832 -14.30918 -14.15153 -14.03975 -13.96683 -13.72275 -13.45036 -13.30675 -13.12605 -12.63933 -12.60218 -12.08041 -12.06412 -11.93944 -11.72072 -11.49962 -11.31008 -10.84063 -10.61481 -10.57069 -10.36862 -10.19715 -10.04939 -9.63622 -9.26733 -8.42661 -6.09711 0.68354 0.74014 1.11669 1.38344 1.50622 1.60420 1.76745 1.83369 1.94419 2.54855 2.64377 3.11472 3.37772 3.60967 3.83520 4.06459 4.13356 4.14114 4.28091 4.28939 4.30694 4.38187 4.44722 4.49149 4.54043 4.63466 4.71144 4.83283 4.87106 4.98004 5.07810 5.22818 5.24125 5.38681 5.41001 5.44800 5.63343 5.74694 5.75052 5.82543 5.96074 6.25043 6.31906 6.34902 6.41530 6.60392 6.79631 7.01305 7.42226 7.65652 8.97496 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.014461 B = 0.002876 C = 0.002528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1935.728652 B = 9734.172181 C =11072.403018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.184 4.184 3 C 0.145 3.855 4 N -0.710 5.710 5 C 0.518 3.482 6 O -0.571 6.571 7 C 0.100 3.900 8 N -0.723 5.723 9 C 0.518 3.482 10 O -0.552 6.552 11 C -0.112 4.112 12 C 0.076 3.924 13 H 0.008 0.992 14 C -0.559 4.559 15 H 0.039 0.961 16 C -0.025 4.025 17 N -0.943 5.943 18 Si 1.099 2.901 19 H -0.289 1.289 20 H -0.282 1.282 21 H -0.270 1.270 22 C -0.058 4.058 23 C -0.123 4.123 24 C -0.126 4.126 25 C -0.144 4.144 26 C -0.125 4.125 27 C -0.152 4.152 28 H 0.100 0.900 29 H 0.120 0.880 30 H 0.130 0.870 31 H 0.066 0.934 32 H 0.070 0.930 33 H 0.419 0.581 34 H 0.101 0.899 35 H 0.103 0.897 36 H 0.413 0.587 37 H 0.091 0.909 38 H 0.095 0.905 39 H 0.261 0.739 40 H 0.113 0.887 41 H 0.142 0.858 42 H 0.147 0.853 43 H 0.136 0.864 44 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.079 -2.196 -12.963 19.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.202 4.202 3 C 0.022 3.978 4 N -0.362 5.362 5 C 0.304 3.696 6 O -0.450 6.450 7 C -0.027 4.027 8 N -0.381 5.381 9 C 0.305 3.695 10 O -0.428 6.428 11 C -0.152 4.152 12 C 0.056 3.944 13 H 0.026 0.974 14 C -0.597 4.597 15 H 0.057 0.943 16 C -0.223 4.223 17 N -0.581 5.581 18 Si 0.923 3.077 19 H -0.215 1.215 20 H -0.208 1.208 21 H -0.195 1.195 22 C -0.059 4.059 23 C -0.141 4.141 24 C -0.144 4.144 25 C -0.162 4.162 26 C -0.143 4.143 27 C -0.170 4.170 28 H 0.119 0.881 29 H 0.138 0.862 30 H 0.147 0.853 31 H 0.084 0.916 32 H 0.088 0.912 33 H 0.256 0.744 34 H 0.119 0.881 35 H 0.121 0.879 36 H 0.251 0.749 37 H 0.109 0.891 38 H 0.113 0.887 39 H 0.071 0.929 40 H 0.131 0.869 41 H 0.160 0.840 42 H 0.164 0.836 43 H 0.154 0.846 44 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -13.039 -3.225 -12.081 18.065 hybrid contribution -1.061 0.748 -0.509 1.395 sum -14.100 -2.477 -12.589 19.064 Atomic orbital electron populations 1.24186 0.95636 1.03314 0.96460 1.22948 0.96415 0.97389 1.03474 1.20488 0.91448 0.96857 0.88962 1.45808 1.39807 1.19432 1.31182 1.20521 0.80897 0.82593 0.85590 1.90683 1.69327 1.36761 1.48263 1.21070 0.94961 0.88999 0.97646 1.45735 1.40910 1.19768 1.31656 1.20898 0.78734 0.89492 0.80361 1.90730 1.64996 1.48632 1.38473 1.21570 0.98191 0.93788 1.01607 1.17686 0.93212 0.89973 0.93485 0.97416 1.21793 1.21560 1.22386 0.93931 0.94255 1.26756 0.99950 1.02973 0.92630 1.70815 1.39036 1.24174 1.24043 0.83183 0.74810 0.74031 0.75674 1.21463 1.20834 1.19502 1.20649 0.96330 0.94944 0.93927 1.21013 0.97550 0.96278 0.99232 1.21405 0.99833 0.93955 0.99162 1.21309 0.99672 1.00887 0.94317 1.21305 0.97762 0.95604 0.99632 1.21135 1.02148 0.95537 0.98182 0.88138 0.86213 0.85259 0.91586 0.91196 0.74377 0.88133 0.87871 0.74932 0.89073 0.88696 0.92902 0.86920 0.84038 0.83560 0.84635 0.88470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.28 14.32 67.78 0.97 -0.31 16 2 C -0.18 -1.76 9.63 25.65 0.25 -1.51 16 3 C 0.15 2.10 6.11 85.63 0.52 2.62 16 4 N -0.71 -11.21 5.55 -466.79 -2.59 -13.80 16 5 C 0.52 11.95 7.90 87.66 0.69 12.64 16 6 O -0.57 -16.92 15.67 -3.04 -0.05 -16.97 16 7 C 0.10 2.57 6.15 85.63 0.53 3.10 16 8 N -0.72 -22.83 5.53 -466.79 -2.58 -25.41 16 9 C 0.52 21.24 7.58 87.66 0.66 21.90 16 10 O -0.55 -28.05 15.02 -3.04 -0.05 -28.09 16 11 C -0.11 -4.50 4.95 29.85 0.15 -4.35 16 12 C 0.08 3.78 1.23 -12.28 -0.02 3.77 16 13 H 0.01 0.44 6.59 -2.39 -0.02 0.43 16 14 C -0.56 -31.32 6.35 25.60 0.16 -31.16 16 15 H 0.04 2.19 7.82 -2.91 -0.02 2.17 16 16 C -0.02 -1.46 5.45 84.65 0.46 -1.00 16 17 N -0.94 -59.97 13.56 21.44 0.29 -59.68 16 18 Si 1.10 53.66 29.91 68.60 2.05 55.71 16 19 H -0.29 -14.20 7.11 99.48 0.71 -13.50 16 20 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 21 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 22 C -0.06 -2.64 4.53 -19.87 -0.09 -2.73 16 23 C -0.12 -4.99 8.90 22.27 0.20 -4.79 16 24 C -0.13 -4.23 10.05 22.27 0.22 -4.00 16 25 C -0.14 -4.55 10.05 22.27 0.22 -4.33 16 26 C -0.13 -4.40 10.05 22.27 0.22 -4.18 16 27 C -0.15 -6.50 9.18 22.27 0.20 -6.30 16 28 H 0.10 0.81 7.84 -2.91 -0.02 0.79 16 29 H 0.12 0.61 8.06 -2.91 -0.02 0.59 16 30 H 0.13 0.92 8.06 -2.91 -0.02 0.90 16 31 H 0.07 1.06 7.79 -2.39 -0.02 1.04 16 32 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.42 4.39 8.46 -92.71 -0.78 3.60 16 34 H 0.10 2.53 8.14 -2.39 -0.02 2.51 16 35 H 0.10 2.49 8.14 -2.39 -0.02 2.47 16 36 H 0.41 11.92 7.44 -92.71 -0.69 11.23 16 37 H 0.09 3.20 8.14 -2.39 -0.02 3.18 16 38 H 0.09 3.54 7.96 -2.39 -0.02 3.52 16 39 H 0.26 16.58 6.24 -92.70 -0.58 16.00 16 40 H 0.11 4.52 7.85 -2.91 -0.02 4.50 16 41 H 0.14 3.76 8.06 -2.91 -0.02 3.74 16 42 H 0.15 3.47 8.06 -2.91 -0.02 3.45 16 43 H 0.14 3.92 8.06 -2.91 -0.02 3.90 16 44 H 0.10 4.28 7.95 -2.91 -0.02 4.26 16 Total: -1.00 -79.14 377.78 2.17 -76.97 By element: Atomic # 1 Polarization: 32.16 SS G_CDS: -0.27 Total: 31.89 kcal Atomic # 6 Polarization: -25.98 SS G_CDS: 5.37 Total: -20.62 kcal Atomic # 7 Polarization: -94.01 SS G_CDS: -4.88 Total: -98.89 kcal Atomic # 8 Polarization: -44.97 SS G_CDS: -0.09 Total: -45.06 kcal Atomic # 14 Polarization: 53.66 SS G_CDS: 2.05 Total: 55.71 kcal Total: -79.14 2.17 -76.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356638029.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.366 kcal (2) G-P(sol) polarization free energy of solvation -79.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds