Wall clock time and date at job start Tue Mar 31 2020 11:00:36
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 C 1.52997 * 109.47391 * 2 1
4 4 H 1.08999 * 109.46983 * 305.00292 * 3 2 1
5 5 C 1.50700 * 109.47433 * 185.00059 * 3 2 1
6 6 H 1.07995 * 120.00109 * 240.00043 * 5 3 2
7 7 C 1.37873 * 119.99681 * 60.00380 * 5 3 2
8 8 N 1.31521 * 120.00364 * 359.97438 * 7 5 3
9 9 Si 1.86803 * 119.99840 * 180.02562 * 7 5 3
10 10 H 1.48503 * 109.47183 * 60.00003 * 9 7 5
11 11 H 1.48496 * 109.47283 * 179.97438 * 9 7 5
12 12 H 1.48501 * 109.47136 * 299.99823 * 9 7 5
13 13 N 1.46506 * 109.46691 * 65.00031 * 3 2 1
14 14 C 1.34773 * 119.99969 * 274.72265 * 13 3 2
15 15 O 1.21586 * 120.00012 * 0.02562 * 14 13 3
16 16 C 1.47596 * 119.99781 * 180.02562 * 14 13 3
17 17 C 1.39765 * 120.24119 * 359.72357 * 16 14 13
18 18 C 1.37473 * 120.22957 * 179.73737 * 17 16 14
19 19 C 1.39677 * 120.32595 * 0.52479 * 18 17 16
20 20 C 1.39201 * 119.16034 * 359.75488 * 19 18 17
21 21 C 1.37244 * 120.96623 * 359.97438 * 20 19 18
22 22 C 1.51174 * 106.28603 * 180.02562 * 20 19 18
23 23 C 1.52991 * 110.52641 * 118.62990 * 22 20 19
24 24 C 1.53009 * 110.52394 * 241.23748 * 22 20 19
25 25 C 1.51399 * 103.99146 * 0.02562 * 22 20 19
26 26 O 1.21275 * 126.43304 * 179.97438 * 25 22 20
27 27 N 1.34342 * 107.13107 * 359.97438 * 25 22 20
28 28 H 1.08997 * 109.46886 * 299.99799 * 1 2 3
29 29 H 1.08997 * 109.46969 * 59.99876 * 1 2 3
30 30 H 1.09005 * 109.46969 * 180.02562 * 1 2 3
31 31 H 1.09007 * 109.46841 * 240.00223 * 2 1 3
32 32 H 1.09000 * 109.47546 * 120.00589 * 2 1 3
33 33 H 0.96994 * 119.99652 * 180.02562 * 8 7 5
34 34 H 0.97005 * 119.99811 * 95.00317 * 13 3 2
35 35 H 1.08001 * 119.88476 * 359.97438 * 17 16 14
36 36 H 1.07996 * 119.84012 * 180.26101 * 18 17 16
37 37 H 1.08003 * 120.10004 * 179.97438 * 21 20 19
38 38 H 1.08999 * 109.47530 * 59.99835 * 23 22 20
39 39 H 1.09002 * 109.47552 * 179.97438 * 23 22 20
40 40 H 1.09005 * 109.47233 * 300.00180 * 23 22 20
41 41 H 1.09002 * 109.46983 * 59.99700 * 24 22 20
42 42 H 1.08992 * 109.46692 * 180.02562 * 24 22 20
43 43 H 1.09000 * 109.46438 * 299.99941 * 24 22 20
44 44 H 0.96994 * 123.80541 * 180.02562 * 27 25 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0401 1.4424 0.0000
4 1 1.6054 1.9815 -0.8418
5 6 3.5420 1.4443 -0.1238
6 1 4.1473 1.8888 0.6522
7 6 4.1433 0.8784 -1.2280
8 7 3.4062 0.3367 -2.1730
9 14 6.0050 0.8800 -1.3812
10 1 6.5967 0.1451 -0.2345
11 1 6.3978 0.2158 -2.6499
12 1 6.5005 2.2799 -1.3808
13 7 1.6525 2.0974 1.2519
14 6 0.4373 2.6692 1.3651
15 8 -0.3374 2.6411 0.4285
16 6 0.0471 3.3294 2.6262
17 6 0.9316 3.3596 3.7079
18 6 0.5700 3.9794 4.8806
19 6 -0.6876 4.5744 5.0051
20 6 -1.5661 4.5358 3.9259
21 6 -1.2126 3.9245 2.7491
22 6 -2.8185 5.2549 4.3729
23 6 -3.0757 6.4807 3.4944
24 6 -4.0212 4.3097 4.3379
25 6 -2.5112 5.6762 5.7943
26 8 -3.2472 6.2876 6.5393
27 7 -1.2701 5.2454 6.0751
28 1 -0.3633 0.5138 0.8900
29 1 -0.3633 0.5138 -0.8900
30 1 -0.3633 -1.0277 0.0005
31 1 1.8933 -0.5138 -0.8901
32 1 1.8934 -0.5139 0.8899
33 1 3.8293 -0.0617 -2.9496
34 1 2.2720 2.1230 1.9979
35 1 1.9040 2.8978 3.6210
36 1 1.2599 4.0027 5.7110
37 1 -1.9053 3.9024 1.9208
38 1 -3.1992 6.1658 2.4582
39 1 -3.9814 6.9853 3.8308
40 1 -2.2298 7.1644 3.5678
41 1 -3.8401 3.4666 5.0047
42 1 -4.9134 4.8450 4.6624
43 1 -4.1666 3.9443 3.3213
44 1 -0.8300 5.3864 6.9279
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000358051350.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:00:36
Heat of formation + Delta-G solvation = -48.071514 kcal
Electronic energy + Delta-G solvation = -26289.417831 eV
Core-core repulsion = 22592.299141 eV
Total energy + Delta-G solvation = -3697.118690 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 316.157 amu
Computer time = 0.64 seconds
Orbital eigenvalues (eV)
-42.03556 -39.48308 -38.14247 -35.82453 -35.11506 -34.87769 -32.46022 -31.10515
-30.50762 -29.26821 -27.65934 -26.93782 -25.26503 -23.90317 -22.78185 -21.85845
-20.54145 -19.86931 -19.40090 -18.06580 -17.73919 -16.82406 -15.93808 -15.89073
-15.62751 -15.13809 -14.70030 -14.58816 -14.44419 -14.04246 -13.97728 -13.46427
-13.32824 -13.05158 -12.97461 -12.68131 -12.55349 -12.39481 -12.14738 -11.95288
-11.63382 -11.54668 -11.26787 -11.03131 -10.91475 -10.86799 -10.80774 -10.35988
-10.25929 -10.19591 -9.65490 -9.16257 -9.10870 -9.07395 -8.52522 -8.25503
-7.83913 -6.14955 -4.24767 0.69748 1.17466 2.10456 2.66745 3.19461
3.23477 3.29334 3.29903 3.72476 3.90199 4.07772 4.13598 4.35280
4.54824 4.66996 4.73476 4.97362 5.14089 5.16948 5.18628 5.36108
5.36305 5.45707 5.47638 5.51211 5.77490 5.81501 5.89094 5.90327
6.08975 6.29549 6.33687 6.38014 6.44627 6.47402 6.64411 6.73794
7.02724 7.18054 7.33569 7.40375 7.59040 7.64199 7.70236 7.87217
8.15308 8.61105 8.73913 9.06682 9.42585 10.90288
Molecular weight = 316.16amu
Principal moments of inertia in cm(-1)
A = 0.025063 B = 0.002950 C = 0.002778
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1116.921813 B = 9488.847494 C =10075.187532
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.138 4.138
2 C -0.128 4.128
3 C 0.271 3.729
4 H 0.051 0.949
5 C -0.536 4.536
6 H 0.060 0.940
7 C 0.068 3.932
8 N -0.881 5.881
9 Si 0.901 3.099
10 H -0.276 1.276
11 H -0.286 1.286
12 H -0.276 1.276
13 N -0.701 5.701
14 C 0.544 3.456
15 O -0.544 6.544
16 C -0.138 4.138
17 C -0.053 4.053
18 C -0.144 4.144
19 C 0.154 3.846
20 C -0.144 4.144
21 C -0.007 4.007
22 C -0.052 4.052
23 C -0.127 4.127
24 C -0.127 4.127
25 C 0.537 3.463
26 O -0.500 6.500
27 N -0.658 5.658
28 H 0.038 0.962
29 H 0.050 0.950
30 H 0.023 0.977
31 H 0.099 0.901
32 H 0.031 0.969
33 H 0.265 0.735
34 H 0.387 0.613
35 H 0.138 0.862
36 H 0.131 0.869
37 H 0.142 0.858
38 H 0.077 0.923
39 H 0.070 0.930
40 H 0.060 0.940
41 H 0.060 0.940
42 H 0.070 0.930
43 H 0.077 0.923
44 H 0.412 0.588
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -8.336 7.409 14.453 18.256
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.195 4.195
2 C -0.166 4.166
3 C 0.169 3.831
4 H 0.069 0.931
5 C -0.575 4.575
6 H 0.079 0.921
7 C -0.136 4.136
8 N -0.519 5.519
9 Si 0.728 3.272
10 H -0.202 1.202
11 H -0.211 1.211
12 H -0.202 1.202
13 N -0.349 5.349
14 C 0.330 3.670
15 O -0.424 6.424
16 C -0.143 4.143
17 C -0.072 4.072
18 C -0.165 4.165
19 C 0.056 3.944
20 C -0.147 4.147
21 C -0.026 4.026
22 C -0.055 4.055
23 C -0.185 4.185
24 C -0.184 4.184
25 C 0.324 3.676
26 O -0.374 6.374
27 N -0.300 5.300
28 H 0.057 0.943
29 H 0.069 0.931
30 H 0.042 0.958
31 H 0.118 0.882
32 H 0.050 0.950
33 H 0.075 0.925
34 H 0.220 0.780
35 H 0.156 0.844
36 H 0.149 0.851
37 H 0.159 0.841
38 H 0.096 0.904
39 H 0.089 0.911
40 H 0.080 0.920
41 H 0.079 0.921
42 H 0.089 0.911
43 H 0.096 0.904
44 H 0.251 0.749
Dipole moment (debyes) X Y Z Total
from point charges -9.371 7.632 13.921 18.435
hybrid contribution 1.785 -0.027 0.826 1.967
sum -7.586 7.605 14.747 18.245
Atomic orbital electron populations
1.21841 0.98324 0.98097 1.01251 1.21939 0.92649 0.99722 1.02333
1.18816 0.94214 0.89215 0.80820 0.93111 1.21183 0.90672 1.39253
1.06364 0.92137 1.24875 0.98577 0.94764 0.95366 1.69881 1.35239
1.37407 1.09340 0.86523 0.84868 0.78321 0.77476 1.20166 1.21135
1.20174 1.46456 1.14449 1.55321 1.18627 1.17963 0.83053 0.79339
0.86639 1.90754 1.51550 1.60317 1.39811 1.20225 0.95273 1.03144
0.95619 1.21138 0.99172 0.95624 0.91269 1.20252 0.94181 1.02579
0.99482 1.18285 0.94198 0.94596 0.87321 1.19651 0.95569 1.04785
0.94662 1.20297 0.95087 0.91816 0.95436 1.20115 0.95090 0.97594
0.92740 1.21677 1.02518 0.94809 0.99478 1.21674 0.95021 0.98055
1.03694 1.20613 0.80351 0.77271 0.89320 1.90781 1.51770 1.39269
1.55544 1.43623 1.16704 1.54043 1.15669 0.94264 0.93102 0.95834
0.88241 0.95007 0.92464 0.77966 0.84404 0.85135 0.84064 0.90427
0.91103 0.92042 0.92053 0.91106 0.90429 0.74939
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.98 8.52 37.16 0.32 -2.66 16
2 C -0.13 -3.00 5.45 -26.73 -0.15 -3.14 16
3 C 0.27 6.53 2.24 -69.08 -0.15 6.38 16
4 H 0.05 1.43 7.57 -51.93 -0.39 1.03 16
5 C -0.54 -13.63 8.73 -34.44 -0.30 -13.93 16
6 H 0.06 1.46 7.74 -52.49 -0.41 1.05 16
7 C 0.07 1.76 5.29 -17.82 -0.09 1.67 16
8 N -0.88 -24.07 11.29 55.43 0.63 -23.44 16
9 Si 0.90 20.03 29.54 -169.99 -5.02 15.01 16
10 H -0.28 -6.03 7.11 56.52 0.40 -5.62 16
11 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16
12 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16
13 N -0.70 -13.70 4.97 -55.96 -0.28 -13.97 16
14 C 0.54 10.24 6.33 -12.44 -0.08 10.16 16
15 O -0.54 -12.01 13.53 5.29 0.07 -11.94 16
16 C -0.14 -2.00 5.88 -104.90 -0.62 -2.61 16
17 C -0.05 -0.61 9.51 -39.29 -0.37 -0.98 16
18 C -0.14 -1.39 10.06 -39.32 -0.40 -1.78 16
19 C 0.15 1.59 7.11 -83.67 -0.59 1.00 16
20 C -0.14 -1.62 4.98 -104.39 -0.52 -2.14 16
21 C -0.01 -0.09 9.58 -39.34 -0.38 -0.47 16
22 C -0.05 -0.53 1.01 -156.24 -0.16 -0.69 16
23 C -0.13 -1.16 8.64 37.15 0.32 -0.84 16
24 C -0.13 -1.15 8.65 37.16 0.32 -0.83 16
25 C 0.54 6.06 7.37 -10.84 -0.08 5.98 16
26 O -0.50 -6.94 18.03 5.56 0.10 -6.84 16
27 N -0.66 -6.18 5.85 -9.66 -0.06 -6.24 16
28 H 0.04 0.82 5.67 -51.93 -0.29 0.53 16
29 H 0.05 1.17 7.85 -51.93 -0.41 0.76 16
30 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16
31 H 0.10 2.60 5.95 -51.93 -0.31 2.29 16
32 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16
33 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16
34 H 0.39 6.44 6.57 -40.82 -0.27 6.18 16
35 H 0.14 1.38 6.40 -52.49 -0.34 1.05 16
36 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16
37 H 0.14 1.86 7.66 -52.48 -0.40 1.46 16
38 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16
39 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16
40 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16
41 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16
42 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16
43 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16
44 H 0.41 2.87 8.96 -40.82 -0.37 2.51 16
LS Contribution 359.75 15.07 5.42 5.42
Total: -1.00 -30.72 359.75 -8.19 -38.91
By element:
Atomic # 1 Polarization: 14.11 SS G_CDS: -6.12 Total: 7.98 kcal
Atomic # 6 Polarization: -1.96 SS G_CDS: -2.93 Total: -4.89 kcal
Atomic # 7 Polarization: -43.94 SS G_CDS: 0.29 Total: -43.65 kcal
Atomic # 8 Polarization: -18.96 SS G_CDS: 0.17 Total: -18.79 kcal
Atomic # 14 Polarization: 20.03 SS G_CDS: -5.02 Total: 15.01 kcal
Total LS contribution 5.42 Total: 5.42 kcal
Total: -30.72 -8.19 -38.91 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000358051350.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -9.164 kcal
(2) G-P(sol) polarization free energy of solvation -30.718 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.882 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.189 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.907 kcal
(6) G-S(sol) free energy of system = (1) + (5) -48.072 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.64 seconds