Wall clock time and date at job start Tue Mar 31 2020 11:00:35
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 C 1.52997 * 109.47391 * 2 1
4 4 H 1.08999 * 109.46983 * 305.00292 * 3 2 1
5 5 C 1.50700 * 109.47433 * 185.00059 * 3 2 1
6 6 H 1.07995 * 120.00109 * 240.00043 * 5 3 2
7 7 C 1.37873 * 119.99681 * 60.00380 * 5 3 2
8 8 N 1.31521 * 120.00364 * 359.97438 * 7 5 3
9 9 Si 1.86803 * 119.99840 * 180.02562 * 7 5 3
10 10 H 1.48503 * 109.47183 * 60.00003 * 9 7 5
11 11 H 1.48496 * 109.47283 * 179.97438 * 9 7 5
12 12 H 1.48501 * 109.47136 * 299.99823 * 9 7 5
13 13 N 1.46506 * 109.46691 * 65.00031 * 3 2 1
14 14 C 1.34773 * 119.99969 * 274.72265 * 13 3 2
15 15 O 1.21586 * 120.00012 * 0.02562 * 14 13 3
16 16 C 1.47596 * 119.99781 * 180.02562 * 14 13 3
17 17 C 1.39765 * 120.24119 * 359.72357 * 16 14 13
18 18 C 1.37473 * 120.22957 * 179.73737 * 17 16 14
19 19 C 1.39677 * 120.32595 * 0.52479 * 18 17 16
20 20 C 1.39201 * 119.16034 * 359.75488 * 19 18 17
21 21 C 1.37244 * 120.96623 * 359.97438 * 20 19 18
22 22 C 1.51174 * 106.28603 * 180.02562 * 20 19 18
23 23 C 1.52991 * 110.52641 * 118.62990 * 22 20 19
24 24 C 1.53009 * 110.52394 * 241.23748 * 22 20 19
25 25 C 1.51399 * 103.99146 * 0.02562 * 22 20 19
26 26 O 1.21275 * 126.43304 * 179.97438 * 25 22 20
27 27 N 1.34342 * 107.13107 * 359.97438 * 25 22 20
28 28 H 1.08997 * 109.46886 * 299.99799 * 1 2 3
29 29 H 1.08997 * 109.46969 * 59.99876 * 1 2 3
30 30 H 1.09005 * 109.46969 * 180.02562 * 1 2 3
31 31 H 1.09007 * 109.46841 * 240.00223 * 2 1 3
32 32 H 1.09000 * 109.47546 * 120.00589 * 2 1 3
33 33 H 0.96994 * 119.99652 * 180.02562 * 8 7 5
34 34 H 0.97005 * 119.99811 * 95.00317 * 13 3 2
35 35 H 1.08001 * 119.88476 * 359.97438 * 17 16 14
36 36 H 1.07996 * 119.84012 * 180.26101 * 18 17 16
37 37 H 1.08003 * 120.10004 * 179.97438 * 21 20 19
38 38 H 1.08999 * 109.47530 * 59.99835 * 23 22 20
39 39 H 1.09002 * 109.47552 * 179.97438 * 23 22 20
40 40 H 1.09005 * 109.47233 * 300.00180 * 23 22 20
41 41 H 1.09002 * 109.46983 * 59.99700 * 24 22 20
42 42 H 1.08992 * 109.46692 * 180.02562 * 24 22 20
43 43 H 1.09000 * 109.46438 * 299.99941 * 24 22 20
44 44 H 0.96994 * 123.80541 * 180.02562 * 27 25 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0401 1.4424 0.0000
4 1 1.6054 1.9815 -0.8418
5 6 3.5420 1.4443 -0.1238
6 1 4.1473 1.8888 0.6522
7 6 4.1433 0.8784 -1.2280
8 7 3.4062 0.3367 -2.1730
9 14 6.0050 0.8800 -1.3812
10 1 6.5967 0.1451 -0.2345
11 1 6.3978 0.2158 -2.6499
12 1 6.5005 2.2799 -1.3808
13 7 1.6525 2.0974 1.2519
14 6 0.4373 2.6692 1.3651
15 8 -0.3374 2.6411 0.4285
16 6 0.0471 3.3294 2.6262
17 6 0.9316 3.3596 3.7079
18 6 0.5700 3.9794 4.8806
19 6 -0.6876 4.5744 5.0051
20 6 -1.5661 4.5358 3.9259
21 6 -1.2126 3.9245 2.7491
22 6 -2.8185 5.2549 4.3729
23 6 -3.0757 6.4807 3.4944
24 6 -4.0212 4.3097 4.3379
25 6 -2.5112 5.6762 5.7943
26 8 -3.2472 6.2876 6.5393
27 7 -1.2701 5.2454 6.0751
28 1 -0.3633 0.5138 0.8900
29 1 -0.3633 0.5138 -0.8900
30 1 -0.3633 -1.0277 0.0005
31 1 1.8933 -0.5138 -0.8901
32 1 1.8934 -0.5139 0.8899
33 1 3.8293 -0.0617 -2.9496
34 1 2.2720 2.1230 1.9979
35 1 1.9040 2.8978 3.6210
36 1 1.2599 4.0027 5.7110
37 1 -1.9053 3.9024 1.9208
38 1 -3.1992 6.1658 2.4582
39 1 -3.9814 6.9853 3.8308
40 1 -2.2298 7.1644 3.5678
41 1 -3.8401 3.4666 5.0047
42 1 -4.9134 4.8450 4.6624
43 1 -4.1666 3.9443 3.3213
44 1 -0.8300 5.3864 6.9279
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000358051350.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:00:35
Heat of formation + Delta-G solvation = -67.700333 kcal
Electronic energy + Delta-G solvation = -26290.269000 eV
Core-core repulsion = 22592.299141 eV
Total energy + Delta-G solvation = -3697.969859 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 316.157 amu
Computer time = 0.73 seconds
Orbital eigenvalues (eV)
-42.91495 -40.86150 -39.26185 -37.05100 -36.60872 -35.74716 -34.27949 -32.85101
-31.42359 -30.41556 -28.73575 -28.38288 -26.11806 -25.37607 -24.34914 -22.77665
-22.02321 -21.10616 -20.74739 -19.26981 -18.84984 -17.97061 -17.50214 -17.14736
-16.75938 -16.50137 -16.18906 -15.89030 -15.50222 -15.19189 -14.84212 -14.79589
-14.54718 -14.36969 -13.99176 -13.91645 -13.66600 -13.43161 -13.38508 -13.13391
-13.08444 -12.88819 -12.87889 -12.62245 -12.37779 -12.15746 -12.02999 -11.89059
-11.71426 -11.53829 -11.16429 -11.01903 -10.71792 -10.47986 -9.99003 -9.64397
-9.12056 -8.12500 -6.29695 -0.29969 0.28933 1.17643 1.48157 1.49475
1.57070 1.85341 2.05006 2.37216 2.60661 2.88888 2.95373 3.16867
3.18417 3.70933 3.87742 3.96405 3.96998 4.15363 4.27954 4.42975
4.54140 4.61707 4.67059 4.68164 4.72972 4.75864 4.80287 4.95367
5.01125 5.06521 5.11973 5.17639 5.18683 5.28393 5.36245 5.40561
5.48171 5.60309 5.65607 5.67758 5.82049 5.86419 5.97941 6.20891
6.78261 6.82384 7.02531 7.37128 7.60440 8.92593
Molecular weight = 316.16amu
Principal moments of inertia in cm(-1)
A = 0.025063 B = 0.002950 C = 0.002778
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1116.921813 B = 9488.847494 C =10075.187532
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.124 4.124
2 C -0.121 4.121
3 C 0.279 3.721
4 H 0.000 1.000
5 C -0.548 4.548
6 H 0.074 0.926
7 C 0.016 3.984
8 N -0.915 5.915
9 Si 0.968 3.032
10 H -0.264 1.264
11 H -0.289 1.289
12 H -0.272 1.272
13 N -0.699 5.699
14 C 0.543 3.457
15 O -0.586 6.586
16 C -0.161 4.161
17 C -0.046 4.046
18 C -0.128 4.128
19 C 0.162 3.838
20 C -0.147 4.147
21 C -0.010 4.010
22 C -0.053 4.053
23 C -0.127 4.127
24 C -0.126 4.126
25 C 0.537 3.463
26 O -0.527 6.527
27 N -0.645 5.645
28 H 0.044 0.956
29 H 0.026 0.974
30 H 0.044 0.956
31 H 0.071 0.929
32 H 0.042 0.958
33 H 0.264 0.736
34 H 0.403 0.597
35 H 0.155 0.845
36 H 0.169 0.831
37 H 0.131 0.869
38 H 0.082 0.918
39 H 0.077 0.923
40 H 0.058 0.942
41 H 0.059 0.941
42 H 0.077 0.923
43 H 0.082 0.918
44 H 0.427 0.573
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.217 7.876 17.180 20.231
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.181 4.181
2 C -0.160 4.160
3 C 0.176 3.824
4 H 0.017 0.983
5 C -0.586 4.586
6 H 0.092 0.908
7 C -0.184 4.184
8 N -0.553 5.553
9 Si 0.793 3.207
10 H -0.188 1.188
11 H -0.215 1.215
12 H -0.197 1.197
13 N -0.347 5.347
14 C 0.332 3.668
15 O -0.469 6.469
16 C -0.165 4.165
17 C -0.065 4.065
18 C -0.149 4.149
19 C 0.063 3.937
20 C -0.149 4.149
21 C -0.030 4.030
22 C -0.057 4.057
23 C -0.184 4.184
24 C -0.184 4.184
25 C 0.325 3.675
26 O -0.403 6.403
27 N -0.288 5.288
28 H 0.063 0.937
29 H 0.045 0.955
30 H 0.063 0.937
31 H 0.090 0.910
32 H 0.061 0.939
33 H 0.073 0.927
34 H 0.239 0.761
35 H 0.172 0.828
36 H 0.187 0.813
37 H 0.148 0.852
38 H 0.100 0.900
39 H 0.096 0.904
40 H 0.077 0.923
41 H 0.078 0.922
42 H 0.096 0.904
43 H 0.101 0.899
44 H 0.267 0.733
Dipole moment (debyes) X Y Z Total
from point charges -8.229 8.110 16.707 20.313
hybrid contribution 1.370 -0.111 0.034 1.375
sum -6.860 7.999 16.741 19.781
Atomic orbital electron populations
1.21678 0.97038 0.99107 1.00289 1.21789 0.93714 0.99169 1.01347
1.18371 0.93614 0.89151 0.81261 0.98257 1.21564 0.91427 1.38914
1.06731 0.90809 1.25746 1.03133 0.94436 0.95075 1.70044 1.37083
1.38330 1.09875 0.85460 0.79329 0.78417 0.77498 1.18825 1.21489
1.19679 1.46165 1.15386 1.55520 1.17671 1.18585 0.82039 0.78458
0.87744 1.90729 1.52583 1.61757 1.41804 1.19840 0.96839 1.05280
0.94552 1.21297 0.99160 0.95303 0.90786 1.20543 0.94135 1.00573
0.99643 1.18434 0.94318 0.93857 0.87045 1.19641 0.96403 1.04561
0.94336 1.20169 0.94605 0.92286 0.95903 1.20183 0.95100 0.98051
0.92346 1.21692 1.02740 0.94382 0.99613 1.21688 0.94815 0.97822
1.04041 1.20709 0.80575 0.76796 0.89383 1.90774 1.52614 1.40574
1.56292 1.43508 1.16127 1.53070 1.16056 0.93727 0.95519 0.93681
0.91037 0.93935 0.92662 0.76101 0.82792 0.81306 0.85150 0.89957
0.90422 0.92303 0.92220 0.90444 0.89933 0.73262
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -5.46 8.52 71.98 0.61 -4.85 16
2 C -0.12 -5.81 5.45 30.59 0.17 -5.65 16
3 C 0.28 13.85 2.24 44.24 0.10 13.95 16
4 H 0.00 -0.03 7.57 -2.39 -0.02 -0.05 16
5 C -0.55 -27.96 8.73 25.60 0.22 -27.73 16
6 H 0.07 3.47 7.74 -2.91 -0.02 3.45 16
7 C 0.02 0.85 5.29 84.65 0.45 1.30 16
8 N -0.92 -51.37 11.29 21.45 0.24 -51.12 16
9 Si 0.97 40.87 29.54 68.60 2.03 42.89 16
10 H -0.26 -10.53 7.11 99.48 0.71 -9.82 16
11 H -0.29 -12.26 7.11 99.48 0.71 -11.56 16
12 H -0.27 -11.18 7.11 99.48 0.71 -10.48 16
13 N -0.70 -27.36 4.97 -449.21 -2.23 -29.59 16
14 C 0.54 20.72 6.33 86.71 0.55 21.27 16
15 O -0.59 -27.02 13.53 -3.99 -0.05 -27.07 16
16 C -0.16 -4.50 5.88 -20.05 -0.12 -4.62 16
17 C -0.05 -0.93 9.51 22.46 0.21 -0.72 16
18 C -0.13 -1.95 10.06 22.44 0.23 -1.73 16
19 C 0.16 2.85 7.11 38.57 0.27 3.12 16
20 C -0.15 -3.05 4.98 -19.72 -0.10 -3.15 16
21 C -0.01 -0.26 9.58 22.43 0.21 -0.04 16
22 C -0.05 -1.01 1.01 -53.30 -0.05 -1.06 16
23 C -0.13 -2.16 8.64 71.98 0.62 -1.54 16
24 C -0.13 -2.12 8.65 71.99 0.62 -1.50 16
25 C 0.54 11.04 7.37 87.95 0.65 11.68 16
26 O -0.53 -13.79 18.03 -3.01 -0.05 -13.85 16
27 N -0.64 -10.16 5.85 -303.13 -1.77 -11.93 16
28 H 0.04 1.89 5.67 -2.39 -0.01 1.88 16
29 H 0.03 1.26 7.85 -2.39 -0.02 1.25 16
30 H 0.04 1.74 8.14 -2.38 -0.02 1.73 16
31 H 0.07 3.86 5.95 -2.38 -0.01 3.85 16
32 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16
33 H 0.26 14.14 8.31 -92.71 -0.77 13.37 16
34 H 0.40 12.92 6.57 -92.70 -0.61 12.31 16
35 H 0.15 2.57 6.40 -2.91 -0.02 2.55 16
36 H 0.17 1.35 8.06 -2.91 -0.02 1.32 16
37 H 0.13 3.54 7.66 -2.91 -0.02 3.52 16
38 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16
39 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16
40 H 0.06 1.02 8.14 -2.38 -0.02 1.00 16
41 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16
42 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16
43 H 0.08 1.29 8.14 -2.39 -0.02 1.28 16
44 H 0.43 4.43 8.96 -92.71 -0.83 3.60 16
Total: -1.00 -68.61 359.75 2.41 -66.20
By element:
Atomic # 1 Polarization: 26.13 SS G_CDS: -0.40 Total: 25.73 kcal
Atomic # 6 Polarization: -5.91 SS G_CDS: 4.65 Total: -1.26 kcal
Atomic # 7 Polarization: -88.88 SS G_CDS: -3.76 Total: -92.65 kcal
Atomic # 8 Polarization: -40.81 SS G_CDS: -0.11 Total: -40.92 kcal
Atomic # 14 Polarization: 40.87 SS G_CDS: 2.03 Total: 42.89 kcal
Total: -68.61 2.41 -66.20 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000358051350.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -1.502 kcal
(2) G-P(sol) polarization free energy of solvation -68.606 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.108 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.408 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.198 kcal
(6) G-S(sol) free energy of system = (1) + (5) -67.700 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.73 seconds