Wall clock time and date at job start Tue Mar 31 2020 11:00:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46665 * 2 1 4 4 H 1.09000 * 109.46815 * 54.28334 * 3 2 1 5 5 C 1.50698 * 109.46997 * 174.27857 * 3 2 1 6 6 H 1.08007 * 119.99884 * 114.30746 * 5 3 2 7 7 C 1.37876 * 120.00513 * 294.30890 * 5 3 2 8 8 N 1.31509 * 120.00760 * 153.95370 * 7 5 3 9 9 Si 1.86803 * 119.99588 * 333.95194 * 7 5 3 10 10 H 1.48501 * 109.47184 * 179.97438 * 9 7 5 11 11 H 1.48500 * 109.47436 * 299.99993 * 9 7 5 12 12 H 1.48504 * 109.47124 * 60.00159 * 9 7 5 13 13 N 1.46495 * 109.47062 * 294.28295 * 3 2 1 14 14 C 1.34772 * 120.00313 * 85.00200 * 13 3 2 15 15 O 1.21584 * 119.99988 * 359.97438 * 14 13 3 16 16 C 1.47598 * 120.00172 * 179.97438 * 14 13 3 17 17 C 1.39770 * 120.23882 * 359.71857 * 16 14 13 18 18 C 1.37469 * 120.22574 * 179.79576 * 17 16 14 19 19 C 1.39675 * 120.32984 * 0.45580 * 18 17 16 20 20 C 1.39203 * 119.16062 * 359.79805 * 19 18 17 21 21 C 1.37237 * 120.96610 * 359.97438 * 20 19 18 22 22 C 1.51168 * 106.28659 * 180.02562 * 20 19 18 23 23 C 1.53003 * 110.52523 * 118.63076 * 22 20 19 24 24 C 1.53004 * 110.52476 * 241.23905 * 22 20 19 25 25 C 1.51399 * 103.99160 * 0.02562 * 22 20 19 26 26 O 1.21276 * 126.43088 * 179.97438 * 25 22 20 27 27 N 1.34333 * 107.13235 * 0.02562 * 25 22 20 28 28 H 1.09005 * 109.46581 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47068 * 299.99087 * 1 2 3 30 30 H 1.08994 * 109.47343 * 60.00014 * 1 2 3 31 31 H 1.08993 * 109.47072 * 240.00417 * 2 1 3 32 32 H 1.08994 * 109.47343 * 119.99986 * 2 1 3 33 33 H 0.97007 * 119.99209 * 354.96251 * 8 7 5 34 34 H 0.97005 * 120.00069 * 264.99241 * 13 3 2 35 35 H 1.07994 * 119.88255 * 0.02756 * 17 16 14 36 36 H 1.08002 * 119.83831 * 180.23941 * 18 17 16 37 37 H 1.07994 * 120.10523 * 179.97438 * 21 20 19 38 38 H 1.09005 * 109.46922 * 59.99977 * 23 22 20 39 39 H 1.08996 * 109.46961 * 179.97438 * 23 22 20 40 40 H 1.08992 * 109.47239 * 300.00140 * 23 22 20 41 41 H 1.08992 * 109.47412 * 60.00306 * 24 22 20 42 42 H 1.09001 * 109.46940 * 180.02562 * 24 22 20 43 43 H 1.09003 * 109.47012 * 299.99691 * 24 22 20 44 44 H 0.96995 * 123.80892 * 179.97438 * 27 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5953 1.9850 0.8344 5 6 3.5402 1.4450 0.1416 6 1 4.1586 1.8024 -0.6686 7 6 4.1236 0.9911 1.3055 8 7 5.3469 0.5087 1.2833 9 14 3.1765 1.0613 2.9140 10 1 4.0191 0.5167 4.0089 11 1 2.8199 2.4705 3.2175 12 1 1.9372 0.2518 2.7945 13 7 1.6671 2.0923 -1.2590 14 6 0.4513 2.6586 -1.3909 15 8 -0.3364 2.6299 -0.4651 16 6 0.0759 3.3136 -2.6592 17 6 0.9797 3.3547 -3.7246 18 6 0.6283 3.9612 -4.9072 19 6 -0.6303 4.5496 -5.0513 20 6 -1.5238 4.5099 -3.9846 21 6 -1.1845 3.9029 -2.8015 22 6 -2.7736 5.2203 -4.4519 23 6 -3.9708 4.2677 -4.4338 24 6 -3.0519 6.4460 -3.5794 25 6 -2.4490 5.6372 -5.8707 26 8 -3.1783 6.2408 -6.6288 27 7 -1.2020 5.2119 -6.1326 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 1.8933 -0.5137 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 5.8117 0.4042 0.4383 34 1 2.2954 2.1150 -1.9977 35 1 1.9560 2.9051 -3.6197 36 1 1.3301 3.9859 -5.7277 37 1 -1.8884 3.8805 -1.9828 38 1 -4.1295 3.9030 -3.4189 39 1 -4.8613 4.7969 -4.7728 40 1 -3.7744 3.4247 -5.0962 41 1 -2.2095 7.1348 -3.6411 42 1 -3.9556 6.9443 -3.9305 43 1 -3.1894 6.1318 -2.5447 44 1 -0.7509 5.3516 -6.9798 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358051351.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:00:39 Heat of formation + Delta-G solvation = -48.479185 kcal Electronic energy + Delta-G solvation = -26364.629513 eV Core-core repulsion = 22667.493145 eV Total energy + Delta-G solvation = -3697.136368 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.09439 -39.62542 -38.24644 -35.91754 -35.25900 -34.95834 -32.53976 -31.58150 -30.58290 -29.38136 -27.70867 -27.15693 -25.31995 -23.83836 -22.36016 -21.92411 -20.74863 -19.94443 -19.58214 -18.21656 -18.01243 -17.10519 -16.55604 -15.94319 -15.76819 -15.21316 -14.84089 -14.68258 -14.29646 -14.07577 -13.82516 -13.48756 -13.37505 -13.16729 -13.06321 -12.64772 -12.57793 -12.51106 -12.40890 -12.30205 -12.05291 -11.72615 -11.68334 -10.97122 -10.93789 -10.82323 -10.72511 -10.45381 -10.30622 -9.88431 -9.81844 -9.34772 -9.20415 -9.17660 -8.35287 -8.28486 -8.07825 -6.64568 -4.23808 0.61948 1.10707 2.04857 2.61556 3.09562 3.39271 3.44536 3.59167 3.65421 3.82637 3.95283 4.05811 4.41869 4.48686 4.61140 4.68335 4.90706 5.04673 5.05090 5.11052 5.27827 5.31351 5.39957 5.42835 5.44975 5.72182 5.74733 5.83793 5.84350 6.00793 6.06275 6.08481 6.20711 6.26201 6.28062 6.41982 6.65172 6.70062 6.78623 6.93466 7.03254 7.34082 7.37194 7.59356 7.63962 8.21089 8.42225 8.66085 8.91299 9.41010 10.73439 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.025870 B = 0.003064 C = 0.002922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.092588 B = 9136.650724 C = 9581.516871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.131 4.131 3 C 0.251 3.749 4 H 0.042 0.958 5 C -0.631 4.631 6 H 0.062 0.938 7 C 0.050 3.950 8 N -0.885 5.885 9 Si 1.029 2.971 10 H -0.283 1.283 11 H -0.280 1.280 12 H -0.273 1.273 13 N -0.694 5.694 14 C 0.546 3.454 15 O -0.546 6.546 16 C -0.141 4.141 17 C -0.051 4.051 18 C -0.144 4.144 19 C 0.156 3.844 20 C -0.144 4.144 21 C -0.006 4.006 22 C -0.052 4.052 23 C -0.127 4.127 24 C -0.127 4.127 25 C 0.537 3.463 26 O -0.499 6.499 27 N -0.658 5.658 28 H 0.030 0.970 29 H 0.051 0.949 30 H 0.049 0.951 31 H 0.050 0.950 32 H 0.063 0.937 33 H 0.271 0.729 34 H 0.391 0.609 35 H 0.138 0.862 36 H 0.132 0.868 37 H 0.142 0.858 38 H 0.077 0.923 39 H 0.070 0.930 40 H 0.060 0.940 41 H 0.061 0.939 42 H 0.070 0.930 43 H 0.077 0.923 44 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.016 7.331 -13.447 20.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.170 4.170 3 C 0.148 3.852 4 H 0.060 0.940 5 C -0.668 4.668 6 H 0.081 0.919 7 C -0.159 4.159 8 N -0.517 5.517 9 Si 0.856 3.144 10 H -0.209 1.209 11 H -0.206 1.206 12 H -0.199 1.199 13 N -0.342 5.342 14 C 0.332 3.668 15 O -0.427 6.427 16 C -0.145 4.145 17 C -0.071 4.071 18 C -0.165 4.165 19 C 0.058 3.942 20 C -0.147 4.147 21 C -0.025 4.025 22 C -0.055 4.055 23 C -0.185 4.185 24 C -0.185 4.185 25 C 0.324 3.676 26 O -0.372 6.372 27 N -0.300 5.300 28 H 0.049 0.951 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.225 0.775 35 H 0.156 0.844 36 H 0.149 0.851 37 H 0.160 0.840 38 H 0.095 0.905 39 H 0.089 0.911 40 H 0.080 0.920 41 H 0.080 0.920 42 H 0.089 0.911 43 H 0.096 0.904 44 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -13.910 7.359 -11.507 19.495 hybrid contribution 0.749 0.328 -2.639 2.762 sum -13.161 7.686 -14.146 20.794 Atomic orbital electron populations 1.21900 0.97378 0.98894 1.02009 1.22232 0.93727 0.99646 1.01426 1.19041 0.95811 0.88506 0.81867 0.94022 1.21967 0.89674 1.50209 1.04909 0.91942 1.25598 0.96584 0.91616 1.02086 1.70878 1.13897 1.36332 1.30566 0.84236 0.76079 0.77686 0.76448 1.20864 1.20621 1.19858 1.46219 1.14219 1.55536 1.18227 1.18018 0.82926 0.79189 0.86710 1.90743 1.50809 1.60290 1.40818 1.20143 0.95255 1.03553 0.95556 1.21136 0.99080 0.95553 0.91296 1.20258 0.94211 1.02686 0.99321 1.18293 0.94223 0.94460 0.87177 1.19650 0.95480 1.04850 0.94704 1.20283 0.95191 0.91748 0.95295 1.20118 0.95046 0.97668 0.92705 1.21677 0.95120 0.97988 1.03678 1.21677 1.02505 0.94797 0.99495 1.20608 0.80395 0.77197 0.89354 1.90786 1.52492 1.39432 1.54520 1.43631 1.16322 1.54435 1.15648 0.95111 0.92969 0.93217 0.93159 0.91823 0.91860 0.77463 0.84434 0.85052 0.84031 0.90453 0.91061 0.92049 0.92017 0.91066 0.90435 0.74882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.84 8.53 37.16 0.32 -2.52 16 2 C -0.13 -2.85 5.37 -26.73 -0.14 -2.99 16 3 C 0.25 5.75 1.84 -69.08 -0.13 5.63 16 4 H 0.04 1.05 6.12 -51.93 -0.32 0.73 16 5 C -0.63 -16.38 8.92 -34.44 -0.31 -16.69 16 6 H 0.06 1.69 7.96 -52.48 -0.42 1.27 16 7 C 0.05 1.35 5.15 -17.82 -0.09 1.26 16 8 N -0.89 -25.50 13.70 55.43 0.76 -24.74 16 9 Si 1.03 24.38 26.56 -169.99 -4.51 19.86 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 12 H -0.27 -6.12 6.34 56.52 0.36 -5.76 16 13 N -0.69 -13.23 4.98 -55.96 -0.28 -13.51 16 14 C 0.55 9.83 6.37 -12.44 -0.08 9.76 16 15 O -0.55 -11.38 13.49 5.29 0.07 -11.30 16 16 C -0.14 -1.96 5.88 -104.90 -0.62 -2.58 16 17 C -0.05 -0.58 9.51 -39.29 -0.37 -0.95 16 18 C -0.14 -1.36 10.06 -39.33 -0.40 -1.75 16 19 C 0.16 1.57 7.11 -83.67 -0.59 0.98 16 20 C -0.14 -1.56 4.98 -104.40 -0.52 -2.08 16 21 C -0.01 -0.07 9.58 -39.34 -0.38 -0.45 16 22 C -0.05 -0.51 1.01 -156.24 -0.16 -0.67 16 23 C -0.13 -1.10 8.64 37.16 0.32 -0.77 16 24 C -0.13 -1.11 8.65 37.16 0.32 -0.79 16 25 C 0.54 5.90 7.37 -10.84 -0.08 5.82 16 26 O -0.50 -6.79 18.03 5.56 0.10 -6.69 16 27 N -0.66 -6.01 5.85 -9.66 -0.06 -6.06 16 28 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.05 1.07 7.89 -51.93 -0.41 0.66 16 30 H 0.05 0.96 5.63 -51.93 -0.29 0.67 16 31 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.06 1.45 5.77 -51.93 -0.30 1.15 16 33 H 0.27 7.70 8.73 -40.82 -0.36 7.35 16 34 H 0.39 6.54 6.56 -40.82 -0.27 6.27 16 35 H 0.14 1.39 6.40 -52.49 -0.34 1.05 16 36 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 37 H 0.14 1.76 7.66 -52.49 -0.40 1.36 16 38 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.41 2.79 8.96 -40.82 -0.37 2.42 16 LS Contribution 356.99 15.07 5.38 5.38 Total: -1.00 -31.44 356.99 -7.55 -38.99 By element: Atomic # 1 Polarization: 12.99 SS G_CDS: -6.11 Total: 6.88 kcal Atomic # 6 Polarization: -5.90 SS G_CDS: -2.91 Total: -8.81 kcal Atomic # 7 Polarization: -44.74 SS G_CDS: 0.42 Total: -44.32 kcal Atomic # 8 Polarization: -18.17 SS G_CDS: 0.17 Total: -18.00 kcal Atomic # 14 Polarization: 24.38 SS G_CDS: -4.51 Total: 19.86 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -31.44 -7.55 -38.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358051351.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.491 kcal (2) G-P(sol) polarization free energy of solvation -31.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds