Wall clock time and date at job start Tue Mar 31 2020 11:00:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46665 * 2 1 4 4 H 1.09000 * 109.46815 * 54.28334 * 3 2 1 5 5 C 1.50698 * 109.46997 * 174.27857 * 3 2 1 6 6 H 1.08007 * 119.99884 * 114.30746 * 5 3 2 7 7 C 1.37876 * 120.00513 * 294.30890 * 5 3 2 8 8 N 1.31509 * 120.00760 * 153.95370 * 7 5 3 9 9 Si 1.86803 * 119.99588 * 333.95194 * 7 5 3 10 10 H 1.48501 * 109.47184 * 179.97438 * 9 7 5 11 11 H 1.48500 * 109.47436 * 299.99993 * 9 7 5 12 12 H 1.48504 * 109.47124 * 60.00159 * 9 7 5 13 13 N 1.46495 * 109.47062 * 294.28295 * 3 2 1 14 14 C 1.34772 * 120.00313 * 85.00200 * 13 3 2 15 15 O 1.21584 * 119.99988 * 359.97438 * 14 13 3 16 16 C 1.47598 * 120.00172 * 179.97438 * 14 13 3 17 17 C 1.39770 * 120.23882 * 359.71857 * 16 14 13 18 18 C 1.37469 * 120.22574 * 179.79576 * 17 16 14 19 19 C 1.39675 * 120.32984 * 0.45580 * 18 17 16 20 20 C 1.39203 * 119.16062 * 359.79805 * 19 18 17 21 21 C 1.37237 * 120.96610 * 359.97438 * 20 19 18 22 22 C 1.51168 * 106.28659 * 180.02562 * 20 19 18 23 23 C 1.53003 * 110.52523 * 118.63076 * 22 20 19 24 24 C 1.53004 * 110.52476 * 241.23905 * 22 20 19 25 25 C 1.51399 * 103.99160 * 0.02562 * 22 20 19 26 26 O 1.21276 * 126.43088 * 179.97438 * 25 22 20 27 27 N 1.34333 * 107.13235 * 0.02562 * 25 22 20 28 28 H 1.09005 * 109.46581 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47068 * 299.99087 * 1 2 3 30 30 H 1.08994 * 109.47343 * 60.00014 * 1 2 3 31 31 H 1.08993 * 109.47072 * 240.00417 * 2 1 3 32 32 H 1.08994 * 109.47343 * 119.99986 * 2 1 3 33 33 H 0.97007 * 119.99209 * 354.96251 * 8 7 5 34 34 H 0.97005 * 120.00069 * 264.99241 * 13 3 2 35 35 H 1.07994 * 119.88255 * 0.02756 * 17 16 14 36 36 H 1.08002 * 119.83831 * 180.23941 * 18 17 16 37 37 H 1.07994 * 120.10523 * 179.97438 * 21 20 19 38 38 H 1.09005 * 109.46922 * 59.99977 * 23 22 20 39 39 H 1.08996 * 109.46961 * 179.97438 * 23 22 20 40 40 H 1.08992 * 109.47239 * 300.00140 * 23 22 20 41 41 H 1.08992 * 109.47412 * 60.00306 * 24 22 20 42 42 H 1.09001 * 109.46940 * 180.02562 * 24 22 20 43 43 H 1.09003 * 109.47012 * 299.99691 * 24 22 20 44 44 H 0.96995 * 123.80892 * 179.97438 * 27 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5953 1.9850 0.8344 5 6 3.5402 1.4450 0.1416 6 1 4.1586 1.8024 -0.6686 7 6 4.1236 0.9911 1.3055 8 7 5.3469 0.5087 1.2833 9 14 3.1765 1.0613 2.9140 10 1 4.0191 0.5167 4.0089 11 1 2.8199 2.4705 3.2175 12 1 1.9372 0.2518 2.7945 13 7 1.6671 2.0923 -1.2590 14 6 0.4513 2.6586 -1.3909 15 8 -0.3364 2.6299 -0.4651 16 6 0.0759 3.3136 -2.6592 17 6 0.9797 3.3547 -3.7246 18 6 0.6283 3.9612 -4.9072 19 6 -0.6303 4.5496 -5.0513 20 6 -1.5238 4.5099 -3.9846 21 6 -1.1845 3.9029 -2.8015 22 6 -2.7736 5.2203 -4.4519 23 6 -3.9708 4.2677 -4.4338 24 6 -3.0519 6.4460 -3.5794 25 6 -2.4490 5.6372 -5.8707 26 8 -3.1783 6.2408 -6.6288 27 7 -1.2020 5.2119 -6.1326 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 1.8933 -0.5137 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 5.8117 0.4042 0.4383 34 1 2.2954 2.1150 -1.9977 35 1 1.9560 2.9051 -3.6197 36 1 1.3301 3.9859 -5.7277 37 1 -1.8884 3.8805 -1.9828 38 1 -4.1295 3.9030 -3.4189 39 1 -4.8613 4.7969 -4.7728 40 1 -3.7744 3.4247 -5.0962 41 1 -2.2095 7.1348 -3.6411 42 1 -3.9556 6.9443 -3.9305 43 1 -3.1894 6.1318 -2.5447 44 1 -0.7509 5.3516 -6.9798 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358051351.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:00:39 Heat of formation + Delta-G solvation = -69.347875 kcal Electronic energy + Delta-G solvation = -26365.534447 eV Core-core repulsion = 22667.493145 eV Total energy + Delta-G solvation = -3698.041302 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.94323 -40.95683 -39.31212 -37.15119 -36.65966 -35.76781 -34.46622 -33.19502 -31.46265 -30.47008 -28.89661 -28.38830 -26.13559 -25.06921 -24.10489 -22.81827 -22.15272 -21.18678 -20.80635 -19.87810 -18.92574 -18.40667 -17.68378 -17.21911 -16.78518 -16.47818 -16.10852 -15.65425 -15.46530 -15.30382 -14.87171 -14.84615 -14.52720 -14.39728 -14.36237 -14.01418 -13.97910 -13.73231 -13.50195 -13.39543 -13.09105 -12.92902 -12.62071 -12.46184 -12.38762 -12.26735 -11.93506 -11.76519 -11.72238 -11.53902 -11.21014 -11.16937 -10.79622 -10.37861 -10.02771 -9.80515 -9.17060 -8.78294 -6.37405 -0.34418 0.25262 1.14893 1.49653 1.51677 1.72356 1.82683 1.98538 2.42304 2.45798 2.83267 2.92205 2.96453 3.14674 3.67944 3.84438 3.88993 3.95339 4.10299 4.24251 4.34720 4.39243 4.44206 4.58392 4.66866 4.66929 4.71688 4.75406 4.89270 4.92780 4.98478 5.06561 5.13133 5.15605 5.17318 5.24242 5.28754 5.36121 5.37129 5.58593 5.64848 5.70127 5.74676 5.82392 6.06387 6.58067 6.79760 6.88536 7.29889 7.46139 8.58776 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.025870 B = 0.003064 C = 0.002922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.092588 B = 9136.650724 C = 9581.516871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.128 4.128 3 C 0.256 3.744 4 H 0.022 0.978 5 C -0.626 4.626 6 H 0.044 0.956 7 C 0.008 3.992 8 N -0.916 5.916 9 Si 1.060 2.940 10 H -0.283 1.283 11 H -0.274 1.274 12 H -0.255 1.255 13 N -0.697 5.697 14 C 0.547 3.453 15 O -0.579 6.579 16 C -0.162 4.162 17 C -0.048 4.048 18 C -0.131 4.131 19 C 0.163 3.837 20 C -0.145 4.145 21 C -0.006 4.006 22 C -0.053 4.053 23 C -0.126 4.126 24 C -0.127 4.127 25 C 0.536 3.464 26 O -0.526 6.526 27 N -0.646 5.646 28 H 0.054 0.946 29 H 0.039 0.961 30 H 0.050 0.950 31 H 0.054 0.946 32 H 0.050 0.950 33 H 0.262 0.738 34 H 0.402 0.598 35 H 0.149 0.851 36 H 0.166 0.834 37 H 0.136 0.864 38 H 0.084 0.916 39 H 0.076 0.924 40 H 0.058 0.942 41 H 0.057 0.943 42 H 0.077 0.923 43 H 0.084 0.916 44 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.196 7.715 -14.870 21.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.167 4.167 3 C 0.151 3.849 4 H 0.040 0.960 5 C -0.663 4.663 6 H 0.063 0.937 7 C -0.195 4.195 8 N -0.550 5.550 9 Si 0.883 3.117 10 H -0.208 1.208 11 H -0.199 1.199 12 H -0.179 1.179 13 N -0.346 5.346 14 C 0.336 3.664 15 O -0.461 6.461 16 C -0.166 4.166 17 C -0.067 4.067 18 C -0.151 4.151 19 C 0.065 3.935 20 C -0.148 4.148 21 C -0.026 4.026 22 C -0.056 4.056 23 C -0.184 4.184 24 C -0.184 4.184 25 C 0.325 3.675 26 O -0.402 6.402 27 N -0.289 5.289 28 H 0.073 0.927 29 H 0.059 0.941 30 H 0.069 0.931 31 H 0.073 0.927 32 H 0.068 0.932 33 H 0.072 0.928 34 H 0.238 0.762 35 H 0.166 0.834 36 H 0.184 0.816 37 H 0.154 0.846 38 H 0.103 0.897 39 H 0.095 0.905 40 H 0.077 0.923 41 H 0.076 0.924 42 H 0.096 0.904 43 H 0.103 0.897 44 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges -15.081 7.750 -12.977 21.351 hybrid contribution 1.111 0.284 -2.333 2.600 sum -13.970 8.034 -15.310 22.228 Atomic orbital electron populations 1.21772 0.95564 1.00273 1.01472 1.22125 0.95259 0.98388 1.00966 1.18723 0.93524 0.89494 0.83156 0.95997 1.22150 0.91413 1.48706 1.04038 0.93737 1.26600 0.96693 0.91311 1.04894 1.70966 1.15067 1.38859 1.30087 0.83812 0.75892 0.78321 0.73713 1.20825 1.19943 1.17912 1.46013 1.15263 1.55991 1.17321 1.18532 0.81840 0.78287 0.87785 1.90717 1.51537 1.61417 1.42404 1.19806 0.96745 1.05581 0.94515 1.21259 0.98998 0.95379 0.91090 1.20514 0.94294 1.00914 0.99401 1.18429 0.94314 0.93780 0.87014 1.19660 0.96220 1.04581 0.94376 1.20187 0.94653 0.91956 0.95786 1.20185 0.95082 0.98175 0.92151 1.21695 0.94818 0.97687 1.04173 1.21695 1.02654 0.94317 0.99755 1.20752 0.80583 0.76698 0.89508 1.90777 1.53331 1.40778 1.55332 1.43536 1.15816 1.53503 1.16009 0.92701 0.94149 0.93113 0.92730 0.93169 0.92835 0.76210 0.83366 0.81633 0.84571 0.89687 0.90471 0.92277 0.92385 0.90440 0.89709 0.73330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.06 8.53 71.98 0.61 -4.44 16 2 C -0.13 -5.46 5.37 30.60 0.16 -5.30 16 3 C 0.26 11.68 1.84 44.25 0.08 11.76 16 4 H 0.02 1.11 6.12 -2.39 -0.01 1.09 16 5 C -0.63 -32.80 8.92 25.60 0.23 -32.57 16 6 H 0.04 2.44 7.96 -2.91 -0.02 2.42 16 7 C 0.01 0.45 5.15 84.66 0.44 0.88 16 8 N -0.92 -53.65 13.70 21.45 0.29 -53.35 16 9 Si 1.06 49.24 26.56 68.60 1.82 51.07 16 10 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 11 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 12 H -0.25 -11.00 6.34 99.48 0.63 -10.37 16 13 N -0.70 -26.21 4.98 -449.22 -2.24 -28.44 16 14 C 0.55 19.38 6.37 86.71 0.55 19.93 16 15 O -0.58 -23.98 13.49 -3.98 -0.05 -24.04 16 16 C -0.16 -4.30 5.88 -20.04 -0.12 -4.42 16 17 C -0.05 -0.96 9.51 22.46 0.21 -0.75 16 18 C -0.13 -2.00 10.06 22.44 0.23 -1.78 16 19 C 0.16 2.80 7.11 38.57 0.27 3.07 16 20 C -0.15 -2.85 4.98 -19.72 -0.10 -2.95 16 21 C -0.01 -0.15 9.58 22.43 0.21 0.06 16 22 C -0.05 -0.93 1.01 -53.30 -0.05 -0.99 16 23 C -0.13 -1.95 8.64 71.98 0.62 -1.33 16 24 C -0.13 -2.00 8.65 71.98 0.62 -1.38 16 25 C 0.54 10.70 7.37 87.95 0.65 11.35 16 26 O -0.53 -13.52 18.03 -3.02 -0.05 -13.58 16 27 N -0.65 -9.98 5.85 -303.13 -1.77 -11.76 16 28 H 0.05 1.79 8.14 -2.38 -0.02 1.77 16 29 H 0.04 1.61 7.89 -2.39 -0.02 1.59 16 30 H 0.05 1.90 5.63 -2.39 -0.01 1.88 16 31 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 32 H 0.05 2.25 5.77 -2.39 -0.01 2.24 16 33 H 0.26 15.29 8.73 -92.70 -0.81 14.48 16 34 H 0.40 13.13 6.56 -92.70 -0.61 12.52 16 35 H 0.15 2.63 6.40 -2.91 -0.02 2.61 16 36 H 0.17 1.44 8.06 -2.91 -0.02 1.42 16 37 H 0.14 3.31 7.66 -2.91 -0.02 3.29 16 38 H 0.08 1.18 8.14 -2.38 -0.02 1.16 16 39 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 41 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 42 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 43 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 44 H 0.43 4.42 8.96 -92.71 -0.83 3.59 16 Total: -1.00 -67.90 356.99 2.12 -65.79 By element: Atomic # 1 Polarization: 23.67 SS G_CDS: -0.51 Total: 23.16 kcal Atomic # 6 Polarization: -13.48 SS G_CDS: 4.63 Total: -8.85 kcal Atomic # 7 Polarization: -89.83 SS G_CDS: -3.72 Total: -93.55 kcal Atomic # 8 Polarization: -37.51 SS G_CDS: -0.11 Total: -37.62 kcal Atomic # 14 Polarization: 49.24 SS G_CDS: 1.82 Total: 51.07 kcal Total: -67.90 2.12 -65.79 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358051351.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.561 kcal (2) G-P(sol) polarization free energy of solvation -67.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds