Wall clock time and date at job start Tue Mar 31 2020 11:26:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50703 * 120.00149 * 2 1 4 4 N 1.46501 * 109.47339 * 124.45815 * 3 2 1 5 5 C 1.46500 * 119.99619 * 94.80311 * 4 3 2 6 6 C 1.50696 * 109.47677 * 79.79155 * 5 4 3 7 7 H 1.08004 * 119.99943 * 0.02562 * 6 5 4 8 8 C 1.37874 * 120.00200 * 179.97438 * 6 5 4 9 9 N 1.31522 * 119.99968 * 180.02562 * 8 6 5 10 10 Si 1.86797 * 120.00123 * 0.02562 * 8 6 5 11 11 H 1.48496 * 109.47252 * 89.99483 * 10 8 6 12 12 H 1.48505 * 109.47265 * 209.99550 * 10 8 6 13 13 H 1.48500 * 109.46748 * 329.99486 * 10 8 6 14 14 C 1.34767 * 120.00189 * 274.79952 * 4 3 2 15 15 O 1.21594 * 119.99969 * 0.07032 * 14 4 3 16 16 C 1.47523 * 120.00399 * 180.02562 * 14 4 3 17 17 C 1.39742 * 120.76856 * 24.43783 * 16 14 4 18 18 C 1.38886 * 118.87566 * 179.82605 * 17 16 14 19 19 C 1.37849 * 119.43533 * 0.27503 * 18 17 16 20 20 N 1.32752 * 120.42319 * 0.02562 * 19 18 17 21 21 C 1.31855 * 122.58450 * 359.89948 * 20 19 18 22 22 O 1.35424 * 119.89043 * 179.88784 * 21 20 19 23 23 C 1.50799 * 122.25772 * 180.24411 * 19 18 17 24 24 C 1.52696 * 110.59354 * 342.04759 * 23 19 18 25 25 C 1.53323 * 108.42691 * 51.39395 * 24 23 19 26 26 C 1.50552 * 117.76222 * 179.86981 * 18 17 16 27 27 H 1.08008 * 119.99851 * 5.02770 * 1 2 3 28 28 H 1.07997 * 120.00461 * 185.02101 * 1 2 3 29 29 H 1.07996 * 120.00001 * 179.97438 * 2 1 3 30 30 H 1.08999 * 109.47191 * 4.45784 * 3 2 1 31 31 H 1.09003 * 109.46947 * 244.46335 * 3 2 1 32 32 H 1.09001 * 109.46881 * 199.79448 * 5 4 3 33 33 H 1.08997 * 109.47148 * 319.78685 * 5 4 3 34 34 H 0.97000 * 120.00025 * 180.02562 * 9 8 6 35 35 H 1.08002 * 120.56121 * 0.04400 * 17 16 14 36 36 H 0.96699 * 114.00363 * 270.02304 * 22 21 20 37 37 H 1.09002 * 109.24756 * 102.32881 * 23 19 18 38 38 H 1.08990 * 109.25741 * 221.79464 * 23 19 18 39 39 H 1.09002 * 109.67344 * 171.12737 * 24 23 19 40 40 H 1.08999 * 109.67759 * 291.65633 * 24 23 19 41 41 H 1.08999 * 109.69015 * 49.76062 * 25 24 23 42 42 H 1.09001 * 109.69070 * 170.33216 * 25 24 23 43 43 H 1.08993 * 109.25782 * 42.57564 * 26 18 17 44 44 H 1.09002 * 109.24956 * 283.14556 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9845 1.3373 1.1389 5 6 4.3804 0.9289 0.9637 6 6 5.1606 2.0592 0.3434 7 1 4.6661 2.9891 0.1040 8 6 6.5058 1.9067 0.0825 9 7 7.1868 2.8934 -0.4583 10 14 7.3612 0.2987 0.4971 11 1 7.2848 -0.6177 -0.6688 12 1 8.7850 0.5654 0.8245 13 1 6.6940 -0.3299 1.6654 14 6 2.5476 1.7427 2.3476 15 8 1.3886 2.0805 2.4932 16 6 3.4751 1.7756 3.4943 17 6 4.8533 1.8940 3.2958 18 6 5.6902 1.9248 4.4038 19 6 5.1458 1.8326 5.6668 20 7 3.8331 1.7148 5.8261 21 6 2.9946 1.6820 4.8091 22 8 1.6650 1.5579 5.0344 23 6 5.9940 1.8648 6.9132 24 6 7.4530 1.5635 6.5779 25 6 7.8888 2.4888 5.4357 26 6 7.1707 2.0500 4.1609 27 1 -0.5400 0.9318 -0.0820 28 1 -0.5401 -0.9316 0.0819 29 1 1.8499 -0.9353 0.0004 30 1 1.3579 2.1321 0.0799 31 1 2.6288 1.3982 -0.9273 32 1 4.8106 0.6799 1.9337 33 1 4.4247 0.0563 0.3119 34 1 8.1331 2.7860 -0.6423 35 1 5.2604 1.9640 2.2979 36 1 1.3551 0.6424 5.0657 37 1 5.9266 2.8529 7.3684 38 1 5.6263 1.1188 7.6176 39 1 8.0757 1.7438 7.4542 40 1 7.5506 0.5238 6.2655 41 1 7.6191 3.5178 5.6735 42 1 8.9670 2.4147 5.2940 43 1 7.3455 2.7876 3.3779 44 1 7.5651 1.0858 3.8401 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359385657.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:36 Heat of formation + Delta-G solvation = -1.750625 kcal Electronic energy + Delta-G solvation = -27554.766618 eV Core-core repulsion = 23859.656553 eV Total energy + Delta-G solvation = -3695.110065 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.80935 -38.96496 -37.63377 -35.69534 -35.28918 -34.17396 -32.73330 -32.30980 -29.95435 -29.34102 -28.40770 -25.99793 -24.10552 -23.22813 -22.60122 -22.28818 -20.45765 -19.64444 -18.87236 -17.93778 -17.25273 -16.84310 -16.45391 -15.65165 -15.55366 -14.90933 -14.66816 -14.21276 -14.10656 -13.88582 -13.81164 -13.60068 -13.35797 -13.27520 -12.83501 -12.76880 -12.64764 -12.29356 -11.59934 -11.49121 -11.38142 -11.26450 -11.18061 -10.94871 -10.85456 -10.67334 -10.60274 -10.57567 -10.30866 -9.87789 -9.55768 -9.24776 -9.12730 -8.93292 -8.68174 -8.30835 -7.87263 -6.47334 -4.51605 1.03194 1.53893 2.47850 2.99720 3.07890 3.11146 3.33106 3.69119 3.89824 4.02989 4.11772 4.67658 4.77566 4.86122 4.93794 5.02607 5.11057 5.19044 5.27460 5.47017 5.48242 5.58264 5.63433 5.73441 5.75813 5.86363 5.92711 5.96093 6.07740 6.09559 6.11218 6.22312 6.27231 6.33069 6.36367 6.50837 6.53124 6.65053 6.85342 6.97022 7.00521 7.11621 7.26132 7.82022 7.92515 8.16826 8.24152 8.61846 8.82514 9.08905 10.63319 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.010019 B = 0.007120 C = 0.004516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2793.944095 B = 3931.850889 C = 6199.289786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.164 4.164 3 C 0.147 3.853 4 N -0.581 5.581 5 C 0.181 3.819 6 C -0.550 4.550 7 H 0.086 0.914 8 C 0.085 3.915 9 N -0.872 5.872 10 Si 0.856 3.144 11 H -0.269 1.269 12 H -0.275 1.275 13 H -0.259 1.259 14 C 0.564 3.436 15 O -0.540 6.540 16 C -0.204 4.204 17 C -0.051 4.051 18 C -0.152 4.152 19 C 0.166 3.834 20 N -0.525 5.525 21 C 0.357 3.643 22 O -0.462 6.462 23 C -0.067 4.067 24 C -0.119 4.119 25 C -0.120 4.120 26 C -0.078 4.078 27 H 0.097 0.903 28 H 0.092 0.908 29 H 0.104 0.896 30 H 0.078 0.922 31 H 0.093 0.907 32 H 0.055 0.945 33 H 0.029 0.971 34 H 0.271 0.729 35 H 0.214 0.786 36 H 0.394 0.606 37 H 0.084 0.916 38 H 0.083 0.917 39 H 0.071 0.929 40 H 0.067 0.933 41 H 0.067 0.933 42 H 0.070 0.930 43 H 0.087 0.913 44 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.106 -6.149 8.498 10.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.183 4.183 3 C 0.025 3.975 4 N -0.311 5.311 5 C 0.060 3.940 6 C -0.588 4.588 7 H 0.104 0.896 8 C -0.122 4.122 9 N -0.507 5.507 10 Si 0.681 3.319 11 H -0.194 1.194 12 H -0.200 1.200 13 H -0.183 1.183 14 C 0.352 3.648 15 O -0.419 6.419 16 C -0.210 4.210 17 C -0.075 4.075 18 C -0.154 4.154 19 C 0.031 3.969 20 N -0.244 5.244 21 C 0.175 3.825 22 O -0.268 6.268 23 C -0.105 4.105 24 C -0.157 4.157 25 C -0.158 4.158 26 C -0.116 4.116 27 H 0.115 0.885 28 H 0.110 0.890 29 H 0.122 0.878 30 H 0.097 0.903 31 H 0.111 0.889 32 H 0.072 0.928 33 H 0.047 0.953 34 H 0.082 0.918 35 H 0.230 0.770 36 H 0.251 0.749 37 H 0.102 0.898 38 H 0.101 0.899 39 H 0.090 0.910 40 H 0.085 0.915 41 H 0.086 0.914 42 H 0.088 0.912 43 H 0.106 0.894 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -0.688 -5.352 9.306 10.757 hybrid contribution 0.775 -1.293 -0.816 1.714 sum 0.087 -6.645 8.490 10.782 Atomic orbital electron populations 1.23740 0.95820 1.01494 1.00851 1.23356 0.96201 0.99157 0.99624 1.20395 0.92451 0.94838 0.89843 1.47709 1.11633 1.64031 1.07742 1.20652 0.78399 0.96518 0.98472 1.21352 0.94227 1.01125 1.42072 0.89617 1.24914 0.97136 0.96261 0.93901 1.69880 1.09181 1.31410 1.40237 0.87149 0.80086 0.84433 0.80212 1.19419 1.20029 1.18300 1.17830 0.86767 0.77763 0.82489 1.90739 1.17947 1.49089 1.84173 1.21037 0.95089 1.10751 0.94137 1.24199 0.91650 0.87247 1.04393 1.20488 0.97548 1.04552 0.92822 1.20919 0.88577 0.93333 0.94067 1.66973 1.04012 1.17666 1.35762 1.18954 0.84186 0.92998 0.86372 1.84775 1.16548 1.31557 1.93932 1.20387 0.93233 1.03210 0.93630 1.21580 0.94913 1.00341 0.98854 1.21579 0.99981 0.99669 0.94548 1.20424 0.89748 1.02708 0.98675 0.88517 0.88978 0.87757 0.90333 0.88928 0.92789 0.95338 0.91820 0.77023 0.74921 0.89818 0.89888 0.91021 0.91471 0.91391 0.91155 0.89404 0.90760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.57 14.31 29.02 0.42 -2.15 16 2 C -0.16 -2.59 9.81 -36.02 -0.35 -2.94 16 3 C 0.15 2.68 5.78 -5.19 -0.03 2.65 16 4 N -0.58 -11.96 2.47 -177.67 -0.44 -12.39 16 5 C 0.18 3.83 3.69 -5.20 -0.02 3.81 16 6 C -0.55 -13.38 7.93 -34.44 -0.27 -13.65 16 7 H 0.09 2.36 8.06 -52.48 -0.42 1.94 16 8 C 0.08 2.07 5.31 -17.82 -0.09 1.98 16 9 N -0.87 -23.08 13.96 55.43 0.77 -22.31 16 10 Si 0.86 17.91 27.32 -169.99 -4.64 13.26 16 11 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 12 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 13 H -0.26 -5.09 6.54 56.52 0.37 -4.72 16 14 C 0.56 12.20 7.42 -12.48 -0.09 12.10 16 15 O -0.54 -12.53 15.29 -14.57 -0.22 -12.76 16 16 C -0.20 -4.20 5.62 -104.78 -0.59 -4.79 16 17 C -0.05 -1.03 7.21 -38.78 -0.28 -1.31 16 18 C -0.15 -2.67 5.74 -104.60 -0.60 -3.27 16 19 C 0.17 2.76 6.63 -82.29 -0.55 2.21 16 20 N -0.52 -9.63 10.18 -9.20 -0.09 -9.73 16 21 C 0.36 6.95 7.75 -16.77 -0.13 6.82 16 22 O -0.46 -8.42 11.99 -37.82 -0.45 -8.88 16 23 C -0.07 -0.83 5.91 -27.99 -0.17 -0.99 16 24 C -0.12 -1.26 5.97 -26.72 -0.16 -1.41 16 25 C -0.12 -1.42 5.98 -26.69 -0.16 -1.58 16 26 C -0.08 -1.19 5.67 -28.08 -0.16 -1.35 16 27 H 0.10 1.36 7.86 -52.48 -0.41 0.95 16 28 H 0.09 1.12 8.06 -52.49 -0.42 0.69 16 29 H 0.10 1.56 8.06 -52.49 -0.42 1.14 16 30 H 0.08 1.46 7.23 -51.93 -0.38 1.09 16 31 H 0.09 1.65 8.04 -51.93 -0.42 1.24 16 32 H 0.06 1.15 3.24 -51.93 -0.17 0.98 16 33 H 0.03 0.59 7.57 -51.93 -0.39 0.19 16 34 H 0.27 6.72 8.31 -40.82 -0.34 6.38 16 35 H 0.21 4.62 2.62 -52.49 -0.14 4.49 16 36 H 0.39 5.23 9.06 45.56 0.41 5.64 16 37 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.07 0.71 8.10 -51.93 -0.42 0.29 16 41 H 0.07 0.79 8.10 -51.93 -0.42 0.37 16 42 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.09 1.46 8.13 -51.93 -0.42 1.03 16 44 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 LS Contribution 355.81 15.07 5.36 5.36 Total: -1.00 -29.64 355.81 -8.26 -37.90 By element: Atomic # 1 Polarization: 18.72 SS G_CDS: -5.30 Total: 13.42 kcal Atomic # 6 Polarization: -0.64 SS G_CDS: -3.24 Total: -3.87 kcal Atomic # 7 Polarization: -44.68 SS G_CDS: 0.24 Total: -44.43 kcal Atomic # 8 Polarization: -20.96 SS G_CDS: -0.68 Total: -21.64 kcal Atomic # 14 Polarization: 17.91 SS G_CDS: -4.64 Total: 13.26 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -29.64 -8.26 -37.90 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359385657.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.147 kcal (2) G-P(sol) polarization free energy of solvation -29.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds