Wall clock time and date at job start Tue Mar 31 2020 11:03:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47207 * 2 1 4 4 H 1.09000 * 109.47045 * 305.41206 * 3 2 1 5 5 C 1.50699 * 109.46876 * 185.40562 * 3 2 1 6 6 H 1.08003 * 119.99511 * 245.46597 * 5 3 2 7 7 C 1.37874 * 119.99876 * 65.47929 * 5 3 2 8 8 N 1.31511 * 120.00466 * 9.72998 * 7 5 3 9 9 Si 1.86807 * 119.99833 * 189.73370 * 7 5 3 10 10 H 1.48504 * 109.46800 * 84.98907 * 9 7 5 11 11 H 1.48495 * 109.47149 * 204.99207 * 9 7 5 12 12 H 1.48501 * 109.47043 * 324.99258 * 9 7 5 13 13 N 1.46499 * 109.46610 * 65.40796 * 3 2 1 14 14 C 1.34773 * 120.00075 * 274.99903 * 13 3 2 15 15 O 1.21278 * 120.00093 * 0.02562 * 14 13 3 16 16 C 1.50699 * 120.00159 * 180.02562 * 14 13 3 17 17 H 1.09000 * 110.26523 * 40.70264 * 16 14 13 18 18 C 1.53740 * 110.29835 * 278.63862 * 16 14 13 19 19 C 1.51440 * 104.47548 * 241.09310 * 18 16 14 20 20 C 1.38185 * 130.94778 * 179.97438 * 19 18 16 21 21 C 1.38219 * 120.15018 * 179.97438 * 20 19 18 22 22 C 1.38298 * 119.82681 * 0.02562 * 21 20 19 23 23 C 1.37843 * 120.22514 * 359.97438 * 22 21 20 24 24 C 1.38556 * 108.58076 * 359.92564 * 19 18 16 25 25 N 1.39830 * 111.62083 * 0.04487 * 24 19 18 26 26 C 1.34782 * 124.98226 * 180.02562 * 25 24 19 27 27 C 1.50694 * 119.99969 * 185.10335 * 26 25 24 28 28 O 1.21290 * 119.99529 * 5.10234 * 26 25 24 29 29 H 1.08995 * 109.47167 * 299.99308 * 1 2 3 30 30 H 1.09000 * 109.47141 * 60.00093 * 1 2 3 31 31 H 1.09003 * 109.46950 * 179.97438 * 1 2 3 32 32 H 1.09007 * 109.46876 * 240.00370 * 2 1 3 33 33 H 1.08998 * 109.47100 * 120.00688 * 2 1 3 34 34 H 0.96993 * 120.00320 * 180.02562 * 8 7 5 35 35 H 0.96996 * 120.00284 * 94.72931 * 13 3 2 36 36 H 1.09004 * 110.41140 * 359.84464 * 18 16 14 37 37 H 1.09001 * 110.41475 * 122.29451 * 18 16 14 38 38 H 1.08001 * 119.92177 * 359.91860 * 20 19 18 39 39 H 1.08005 * 120.08871 * 180.02562 * 21 20 19 40 40 H 1.08002 * 119.88945 * 179.97438 * 22 21 20 41 41 H 1.07998 * 119.85659 * 180.02562 * 23 22 21 42 42 H 1.08999 * 109.46928 * 93.93436 * 27 26 25 43 43 H 1.09008 * 109.46970 * 213.93116 * 27 26 25 44 44 H 1.08997 * 109.47216 * 333.92825 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5997 1.9835 -0.8376 5 6 3.5410 1.4445 -0.1339 6 1 4.1550 1.8067 0.6775 7 6 4.1305 0.9842 -1.2922 8 7 3.3908 0.7242 -2.3480 9 14 5.9798 0.7299 -1.3618 10 1 6.3152 -0.6137 -0.8257 11 1 6.4406 0.8303 -2.7698 12 1 6.6537 1.7711 -0.5450 13 7 1.6608 2.0944 1.2560 14 6 0.4443 2.6610 1.3806 15 8 -0.3366 2.6308 0.4533 16 6 0.0545 3.3321 2.6724 17 1 0.8947 3.9005 3.0711 18 6 -0.4155 2.2859 3.6962 19 6 -1.8508 2.6661 3.9943 20 6 -2.7834 2.0921 4.8370 21 6 -4.0516 2.6321 4.9398 22 6 -4.3859 3.7492 4.1962 23 6 -3.4588 4.3252 3.3542 24 6 -2.1754 3.7861 3.2459 25 7 -1.0990 4.2109 2.4609 26 6 -1.1192 5.2731 1.6315 27 6 0.0682 5.5637 0.7503 28 8 -2.0932 5.9950 1.5945 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 3.8054 0.4000 -3.1627 35 1 2.2837 2.1148 1.9992 36 1 -0.3681 1.2853 3.2665 37 1 0.1895 2.3411 4.6013 38 1 -2.5210 1.2189 5.4160 39 1 -4.7796 2.1828 5.5991 40 1 -5.3767 4.1717 4.2754 41 1 -3.7261 5.1977 2.7766 42 1 -0.0840 5.1057 -0.2270 43 1 0.1785 6.6418 0.6331 44 1 0.9688 5.1540 1.2074 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000373513835.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:03:57 Heat of formation + Delta-G solvation = -41.582419 kcal Electronic energy + Delta-G solvation = -27266.364535 eV Core-core repulsion = 23569.527233 eV Total energy + Delta-G solvation = -3696.837302 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.48168 -38.97864 -38.59855 -36.27030 -35.04175 -32.72303 -32.26233 -31.32883 -30.83769 -29.29786 -28.66096 -27.01580 -24.30375 -23.35872 -22.94020 -21.44852 -20.78756 -19.63650 -19.41746 -17.67599 -17.24349 -16.71804 -16.07897 -15.84776 -15.34692 -14.99131 -14.83908 -14.61962 -14.27191 -14.21992 -13.75780 -13.36450 -13.04994 -12.85035 -12.79645 -12.78182 -12.47774 -12.32036 -11.97695 -11.88783 -11.66367 -11.48605 -11.44591 -11.09862 -11.02906 -10.86537 -10.57845 -10.41099 -10.31432 -9.85650 -9.79895 -9.22468 -9.17873 -8.82619 -8.57518 -8.03457 -7.80072 -6.23763 -4.29995 1.24322 1.36307 2.54954 2.71017 3.08543 3.19006 3.26606 3.27135 3.68082 3.91993 4.21841 4.28123 4.41896 4.71099 4.92402 4.95711 5.05435 5.09702 5.13869 5.26271 5.28164 5.40508 5.55564 5.58969 5.62243 5.70657 5.94357 6.02299 6.22708 6.24935 6.28818 6.39218 6.40139 6.49066 6.52331 6.87531 6.99865 7.04896 7.17672 7.25267 7.28543 7.48655 7.59459 7.71165 7.95618 8.02210 8.46404 8.66189 8.91043 9.36163 10.84186 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.020515 B = 0.003748 C = 0.003466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1364.498078 B = 7469.556783 C = 8076.479910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.120 4.120 3 C 0.270 3.730 4 H 0.057 0.943 5 C -0.540 4.540 6 H 0.062 0.938 7 C 0.071 3.929 8 N -0.878 5.878 9 Si 0.897 3.103 10 H -0.278 1.278 11 H -0.286 1.286 12 H -0.274 1.274 13 N -0.700 5.700 14 C 0.491 3.509 15 O -0.529 6.529 16 C 0.107 3.893 17 H 0.110 0.890 18 C -0.073 4.073 19 C -0.136 4.136 20 C -0.078 4.078 21 C -0.147 4.147 22 C -0.095 4.095 23 C -0.132 4.132 24 C 0.157 3.843 25 N -0.534 5.534 26 C 0.538 3.462 27 C -0.169 4.169 28 O -0.529 6.529 29 H 0.040 0.960 30 H 0.051 0.949 31 H 0.024 0.976 32 H 0.080 0.920 33 H 0.035 0.965 34 H 0.266 0.734 35 H 0.390 0.610 36 H 0.097 0.903 37 H 0.100 0.900 38 H 0.125 0.875 39 H 0.124 0.876 40 H 0.125 0.875 41 H 0.138 0.862 42 H 0.110 0.890 43 H 0.094 0.906 44 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.288 3.503 14.326 16.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.159 4.159 3 C 0.169 3.831 4 H 0.075 0.925 5 C -0.578 4.578 6 H 0.080 0.920 7 C -0.133 4.133 8 N -0.514 5.514 9 Si 0.724 3.276 10 H -0.204 1.204 11 H -0.212 1.212 12 H -0.199 1.199 13 N -0.348 5.348 14 C 0.273 3.727 15 O -0.406 6.406 16 C 0.000 4.000 17 H 0.128 0.872 18 C -0.111 4.111 19 C -0.139 4.139 20 C -0.096 4.096 21 C -0.166 4.166 22 C -0.114 4.114 23 C -0.153 4.153 24 C 0.062 3.938 25 N -0.257 5.257 26 C 0.331 3.669 27 C -0.228 4.228 28 O -0.406 6.406 29 H 0.059 0.941 30 H 0.070 0.930 31 H 0.043 0.957 32 H 0.098 0.902 33 H 0.054 0.946 34 H 0.075 0.925 35 H 0.222 0.778 36 H 0.116 0.884 37 H 0.118 0.882 38 H 0.143 0.857 39 H 0.142 0.858 40 H 0.143 0.857 41 H 0.155 0.845 42 H 0.128 0.872 43 H 0.113 0.887 44 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -8.247 3.928 13.249 16.093 hybrid contribution 1.436 -0.347 0.141 1.484 sum -6.811 3.581 13.390 15.444 Atomic orbital electron populations 1.21842 0.97986 0.98287 1.01435 1.21865 0.92916 0.99822 1.01298 1.18846 0.94595 0.88970 0.80715 0.92473 1.21135 0.90400 1.44605 1.01711 0.91992 1.24874 0.98447 0.95037 0.94980 1.69973 1.35807 1.43544 1.02073 0.86541 0.84932 0.78774 0.77336 1.20394 1.21171 1.19874 1.46495 1.13923 1.55718 1.18688 1.20298 0.83429 0.80456 0.88526 1.90736 1.50632 1.59118 1.40086 1.21828 0.89935 0.92227 0.96054 0.87233 1.21064 0.92870 0.99054 0.98067 1.20006 0.96246 0.97240 1.00450 1.20326 0.92435 0.99328 0.97556 1.20971 0.96414 0.97602 1.01592 1.20906 0.98864 0.95835 0.95782 1.20930 0.90833 1.02282 1.01251 1.18376 0.89082 0.94280 0.92057 1.45664 1.11749 1.27452 1.40811 1.20795 0.89773 0.77990 0.78379 1.21948 0.95360 1.04351 1.01101 1.90652 1.35862 1.47626 1.66429 0.94139 0.93020 0.95698 0.90188 0.94596 0.92451 0.77777 0.88425 0.88169 0.85746 0.85782 0.85659 0.84454 0.87205 0.88711 0.90310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.88 8.52 37.16 0.32 -2.56 16 2 C -0.12 -2.67 5.50 -26.73 -0.15 -2.81 16 3 C 0.27 6.15 2.10 -69.08 -0.15 6.01 16 4 H 0.06 1.55 7.52 -51.93 -0.39 1.16 16 5 C -0.54 -13.15 8.66 -34.44 -0.30 -13.45 16 6 H 0.06 1.43 7.74 -52.48 -0.41 1.02 16 7 C 0.07 1.80 5.15 -17.82 -0.09 1.71 16 8 N -0.88 -23.68 12.18 55.43 0.67 -23.00 16 9 Si 0.90 19.59 29.55 -169.99 -5.02 14.56 16 10 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 11 H -0.29 -6.33 7.11 56.52 0.40 -5.92 16 12 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 13 N -0.70 -12.40 5.02 -54.93 -0.28 -12.68 16 14 C 0.49 8.43 3.85 -10.99 -0.04 8.39 16 15 O -0.53 -11.21 12.45 5.56 0.07 -11.14 16 16 C 0.11 1.44 2.94 -68.67 -0.20 1.24 16 17 H 0.11 1.14 7.94 -51.93 -0.41 0.73 16 18 C -0.07 -0.84 6.59 -27.13 -0.18 -1.02 16 19 C -0.14 -1.79 6.24 -104.16 -0.65 -2.44 16 20 C -0.08 -0.87 10.04 -39.61 -0.40 -1.27 16 21 C -0.15 -1.56 10.06 -39.57 -0.40 -1.95 16 22 C -0.10 -1.12 10.02 -39.70 -0.40 -1.52 16 23 C -0.13 -1.95 9.46 -39.21 -0.37 -2.32 16 24 C 0.16 2.43 6.62 -83.57 -0.55 1.87 16 25 N -0.53 -8.38 2.59 -107.07 -0.28 -8.66 16 26 C 0.54 9.01 7.42 -10.99 -0.08 8.93 16 27 C -0.17 -2.42 8.77 36.00 0.32 -2.10 16 28 O -0.53 -10.03 15.29 5.55 0.08 -9.94 16 29 H 0.04 0.81 5.63 -51.93 -0.29 0.52 16 30 H 0.05 1.18 7.87 -51.93 -0.41 0.77 16 31 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.08 2.00 6.81 -51.93 -0.35 1.64 16 33 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 35 H 0.39 5.75 8.53 -40.82 -0.35 5.40 16 36 H 0.10 1.19 7.70 -51.93 -0.40 0.79 16 37 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.12 1.07 8.06 -52.49 -0.42 0.64 16 39 H 0.12 0.97 8.06 -52.48 -0.42 0.55 16 40 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 41 H 0.14 2.19 6.30 -52.49 -0.33 1.86 16 42 H 0.11 1.78 7.76 -51.93 -0.40 1.37 16 43 H 0.09 1.15 8.14 -51.92 -0.42 0.73 16 44 H 0.08 1.03 6.42 -51.93 -0.33 0.70 16 LS Contribution 355.60 15.07 5.36 5.36 Total: -1.00 -31.03 355.60 -8.88 -39.92 By element: Atomic # 1 Polarization: 15.06 SS G_CDS: -6.17 Total: 8.88 kcal Atomic # 6 Polarization: 0.02 SS G_CDS: -3.32 Total: -3.30 kcal Atomic # 7 Polarization: -44.46 SS G_CDS: 0.12 Total: -44.34 kcal Atomic # 8 Polarization: -21.24 SS G_CDS: 0.15 Total: -21.08 kcal Atomic # 14 Polarization: 19.59 SS G_CDS: -5.02 Total: 14.56 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -31.03 -8.88 -39.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000373513835.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.667 kcal (2) G-P(sol) polarization free energy of solvation -31.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds