Wall clock time and date at job start Tue Mar 31 2020 11:03:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47207 * 2 1 4 4 H 1.09000 * 109.47045 * 305.41206 * 3 2 1 5 5 C 1.50699 * 109.46876 * 185.40562 * 3 2 1 6 6 H 1.08003 * 119.99511 * 245.46597 * 5 3 2 7 7 C 1.37874 * 119.99876 * 65.47929 * 5 3 2 8 8 N 1.31511 * 120.00466 * 9.72998 * 7 5 3 9 9 Si 1.86807 * 119.99833 * 189.73370 * 7 5 3 10 10 H 1.48504 * 109.46800 * 84.98907 * 9 7 5 11 11 H 1.48495 * 109.47149 * 204.99207 * 9 7 5 12 12 H 1.48501 * 109.47043 * 324.99258 * 9 7 5 13 13 N 1.46499 * 109.46610 * 65.40796 * 3 2 1 14 14 C 1.34773 * 120.00075 * 274.99903 * 13 3 2 15 15 O 1.21278 * 120.00093 * 0.02562 * 14 13 3 16 16 C 1.50699 * 120.00159 * 180.02562 * 14 13 3 17 17 H 1.09000 * 110.26523 * 40.70264 * 16 14 13 18 18 C 1.53740 * 110.29835 * 278.63862 * 16 14 13 19 19 C 1.51440 * 104.47548 * 241.09310 * 18 16 14 20 20 C 1.38185 * 130.94778 * 179.97438 * 19 18 16 21 21 C 1.38219 * 120.15018 * 179.97438 * 20 19 18 22 22 C 1.38298 * 119.82681 * 0.02562 * 21 20 19 23 23 C 1.37843 * 120.22514 * 359.97438 * 22 21 20 24 24 C 1.38556 * 108.58076 * 359.92564 * 19 18 16 25 25 N 1.39830 * 111.62083 * 0.04487 * 24 19 18 26 26 C 1.34782 * 124.98226 * 180.02562 * 25 24 19 27 27 C 1.50694 * 119.99969 * 185.10335 * 26 25 24 28 28 O 1.21290 * 119.99529 * 5.10234 * 26 25 24 29 29 H 1.08995 * 109.47167 * 299.99308 * 1 2 3 30 30 H 1.09000 * 109.47141 * 60.00093 * 1 2 3 31 31 H 1.09003 * 109.46950 * 179.97438 * 1 2 3 32 32 H 1.09007 * 109.46876 * 240.00370 * 2 1 3 33 33 H 1.08998 * 109.47100 * 120.00688 * 2 1 3 34 34 H 0.96993 * 120.00320 * 180.02562 * 8 7 5 35 35 H 0.96996 * 120.00284 * 94.72931 * 13 3 2 36 36 H 1.09004 * 110.41140 * 359.84464 * 18 16 14 37 37 H 1.09001 * 110.41475 * 122.29451 * 18 16 14 38 38 H 1.08001 * 119.92177 * 359.91860 * 20 19 18 39 39 H 1.08005 * 120.08871 * 180.02562 * 21 20 19 40 40 H 1.08002 * 119.88945 * 179.97438 * 22 21 20 41 41 H 1.07998 * 119.85659 * 180.02562 * 23 22 21 42 42 H 1.08999 * 109.46928 * 93.93436 * 27 26 25 43 43 H 1.09008 * 109.46970 * 213.93116 * 27 26 25 44 44 H 1.08997 * 109.47216 * 333.92825 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5997 1.9835 -0.8376 5 6 3.5410 1.4445 -0.1339 6 1 4.1550 1.8067 0.6775 7 6 4.1305 0.9842 -1.2922 8 7 3.3908 0.7242 -2.3480 9 14 5.9798 0.7299 -1.3618 10 1 6.3152 -0.6137 -0.8257 11 1 6.4406 0.8303 -2.7698 12 1 6.6537 1.7711 -0.5450 13 7 1.6608 2.0944 1.2560 14 6 0.4443 2.6610 1.3806 15 8 -0.3366 2.6308 0.4533 16 6 0.0545 3.3321 2.6724 17 1 0.8947 3.9005 3.0711 18 6 -0.4155 2.2859 3.6962 19 6 -1.8508 2.6661 3.9943 20 6 -2.7834 2.0921 4.8370 21 6 -4.0516 2.6321 4.9398 22 6 -4.3859 3.7492 4.1962 23 6 -3.4588 4.3252 3.3542 24 6 -2.1754 3.7861 3.2459 25 7 -1.0990 4.2109 2.4609 26 6 -1.1192 5.2731 1.6315 27 6 0.0682 5.5637 0.7503 28 8 -2.0932 5.9950 1.5945 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 3.8054 0.4000 -3.1627 35 1 2.2837 2.1148 1.9992 36 1 -0.3681 1.2853 3.2665 37 1 0.1895 2.3411 4.6013 38 1 -2.5210 1.2189 5.4160 39 1 -4.7796 2.1828 5.5991 40 1 -5.3767 4.1717 4.2754 41 1 -3.7261 5.1977 2.7766 42 1 -0.0840 5.1057 -0.2270 43 1 0.1785 6.6418 0.6331 44 1 0.9688 5.1540 1.2074 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000373513835.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:03:57 Heat of formation + Delta-G solvation = -60.753071 kcal Electronic energy + Delta-G solvation = -27267.195837 eV Core-core repulsion = 23569.527233 eV Total energy + Delta-G solvation = -3697.668603 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.61294 -40.40154 -39.74730 -37.50026 -36.64059 -34.34931 -33.50334 -32.92680 -31.98049 -30.43468 -29.73316 -28.75961 -25.59076 -24.71113 -24.30869 -22.40977 -22.24724 -21.24654 -20.64509 -19.14039 -18.41107 -18.00544 -17.61670 -16.97243 -16.79757 -16.45477 -16.20738 -15.87321 -15.70835 -15.24855 -15.04969 -14.61317 -14.45129 -14.38038 -14.04395 -13.78719 -13.54176 -13.49207 -13.44383 -13.26195 -13.13088 -13.03022 -12.87375 -12.60992 -12.53883 -12.19224 -12.07618 -11.97599 -11.66308 -11.60337 -11.09644 -11.06747 -10.61008 -10.48872 -9.75965 -9.65928 -8.86161 -8.16472 -6.28714 0.24531 0.41616 1.33259 1.47710 1.48981 1.53989 1.57704 1.79593 2.34430 2.54047 2.87274 3.16274 3.18097 3.38890 3.66608 3.87791 3.97816 4.08463 4.15348 4.20347 4.34208 4.41201 4.47179 4.50589 4.53528 4.61718 4.72122 4.74650 4.80819 4.84131 5.06712 5.08984 5.24249 5.26629 5.41450 5.42145 5.49598 5.52872 5.60224 5.64173 5.77109 5.91597 6.07252 6.09335 6.14964 6.78539 6.80516 6.95245 7.36585 7.54654 8.91769 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.020515 B = 0.003748 C = 0.003466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1364.498078 B = 7469.556783 C = 8076.479910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.112 4.112 3 C 0.280 3.720 4 H 0.004 0.996 5 C -0.544 4.544 6 H 0.078 0.922 7 C 0.019 3.981 8 N -0.917 5.917 9 Si 0.962 3.038 10 H -0.272 1.272 11 H -0.294 1.294 12 H -0.261 1.261 13 N -0.691 5.691 14 C 0.494 3.506 15 O -0.573 6.573 16 C 0.111 3.889 17 H 0.149 0.851 18 C -0.067 4.067 19 C -0.140 4.140 20 C -0.077 4.077 21 C -0.137 4.137 22 C -0.098 4.098 23 C -0.159 4.159 24 C 0.115 3.885 25 N -0.538 5.538 26 C 0.528 3.472 27 C -0.161 4.161 28 O -0.564 6.564 29 H 0.048 0.952 30 H 0.019 0.981 31 H 0.044 0.956 32 H 0.047 0.953 33 H 0.054 0.946 34 H 0.263 0.737 35 H 0.409 0.591 36 H 0.094 0.906 37 H 0.145 0.855 38 H 0.159 0.841 39 H 0.160 0.840 40 H 0.147 0.853 41 H 0.111 0.889 42 H 0.086 0.914 43 H 0.115 0.885 44 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.396 2.350 18.015 19.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.151 4.151 3 C 0.176 3.824 4 H 0.022 0.978 5 C -0.582 4.582 6 H 0.096 0.904 7 C -0.181 4.181 8 N -0.555 5.555 9 Si 0.787 3.213 10 H -0.198 1.198 11 H -0.221 1.221 12 H -0.185 1.185 13 N -0.341 5.341 14 C 0.278 3.722 15 O -0.453 6.453 16 C 0.004 3.996 17 H 0.167 0.833 18 C -0.104 4.104 19 C -0.143 4.143 20 C -0.095 4.095 21 C -0.156 4.156 22 C -0.117 4.117 23 C -0.180 4.180 24 C 0.021 3.979 25 N -0.260 5.260 26 C 0.321 3.679 27 C -0.220 4.220 28 O -0.443 6.443 29 H 0.067 0.933 30 H 0.038 0.962 31 H 0.063 0.937 32 H 0.066 0.934 33 H 0.073 0.927 34 H 0.072 0.928 35 H 0.245 0.755 36 H 0.112 0.888 37 H 0.162 0.838 38 H 0.176 0.824 39 H 0.178 0.822 40 H 0.165 0.835 41 H 0.129 0.871 42 H 0.104 0.896 43 H 0.133 0.867 44 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -7.338 2.764 17.007 18.727 hybrid contribution 1.033 0.003 -0.969 1.416 sum -6.305 2.767 16.038 17.453 Atomic orbital electron populations 1.21674 0.97026 0.99123 1.00248 1.21714 0.93628 0.99259 1.00527 1.18360 0.93745 0.88934 0.81315 0.97784 1.21539 0.91300 1.43528 1.01852 0.90392 1.25712 1.02657 0.95007 0.94769 1.70131 1.37648 1.45056 1.02684 0.85515 0.79846 0.79061 0.76864 1.19771 1.22054 1.18514 1.46143 1.14769 1.55559 1.17642 1.20946 0.82378 0.79458 0.89422 1.90736 1.51878 1.60480 1.42176 1.22019 0.90648 0.92861 0.94060 0.83347 1.21186 0.92609 0.97706 0.98898 1.20324 0.97397 0.96368 1.00213 1.20788 0.92034 0.99852 0.96829 1.21434 0.97007 0.96394 1.00728 1.21211 0.99203 0.96227 0.95033 1.20978 0.91920 1.02453 1.02599 1.18744 0.89408 0.96139 0.93649 1.45739 1.12698 1.27046 1.40503 1.21175 0.89876 0.78228 0.78665 1.21907 0.95043 1.05630 0.99440 1.90624 1.37085 1.49020 1.67595 0.93325 0.96166 0.93693 0.93392 0.92690 0.92837 0.75543 0.88793 0.83752 0.82391 0.82238 0.83535 0.87052 0.89594 0.86696 0.88941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.18 8.52 71.98 0.61 -4.56 16 2 C -0.11 -5.00 5.50 30.59 0.17 -4.84 16 3 C 0.28 12.89 2.10 44.25 0.09 12.98 16 4 H 0.00 0.24 7.52 -2.39 -0.02 0.22 16 5 C -0.54 -26.19 8.66 25.60 0.22 -25.96 16 6 H 0.08 3.43 7.74 -2.91 -0.02 3.40 16 7 C 0.02 0.97 5.15 84.65 0.44 1.41 16 8 N -0.92 -51.04 12.18 21.45 0.26 -50.78 16 9 Si 0.96 39.84 29.55 68.60 2.03 41.87 16 10 H -0.27 -10.95 7.11 99.48 0.71 -10.25 16 11 H -0.29 -12.49 7.11 99.48 0.71 -11.79 16 12 H -0.26 -10.18 7.11 99.48 0.71 -9.47 16 13 N -0.69 -23.66 5.02 -446.10 -2.24 -25.90 16 14 C 0.49 16.64 3.85 87.66 0.34 16.98 16 15 O -0.57 -25.07 12.45 -3.02 -0.04 -25.11 16 16 C 0.11 2.75 2.94 44.49 0.13 2.88 16 17 H 0.15 2.54 7.94 -2.39 -0.02 2.52 16 18 C -0.07 -1.30 6.59 30.33 0.20 -1.10 16 19 C -0.14 -3.31 6.24 -19.57 -0.12 -3.43 16 20 C -0.08 -1.41 10.04 22.25 0.22 -1.18 16 21 C -0.14 -2.41 10.06 22.28 0.22 -2.19 16 22 C -0.10 -2.17 10.02 22.19 0.22 -1.95 16 23 C -0.16 -4.78 9.46 22.51 0.21 -4.56 16 24 C 0.11 3.49 6.62 38.28 0.25 3.75 16 25 N -0.54 -16.78 2.59 -611.05 -1.58 -18.36 16 26 C 0.53 18.27 7.42 87.65 0.65 18.92 16 27 C -0.16 -4.75 8.77 71.23 0.62 -4.13 16 28 O -0.56 -22.64 15.29 -3.06 -0.05 -22.69 16 29 H 0.05 1.93 5.63 -2.39 -0.01 1.92 16 30 H 0.02 0.93 7.87 -2.39 -0.02 0.92 16 31 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.05 2.45 6.81 -2.38 -0.02 2.43 16 33 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 34 H 0.26 14.03 8.31 -92.71 -0.77 13.26 16 35 H 0.41 10.89 8.53 -92.71 -0.79 10.10 16 36 H 0.09 1.95 7.70 -2.39 -0.02 1.94 16 37 H 0.14 1.57 8.14 -2.39 -0.02 1.55 16 38 H 0.16 1.82 8.06 -2.91 -0.02 1.80 16 39 H 0.16 1.68 8.06 -2.91 -0.02 1.65 16 40 H 0.15 2.45 8.06 -2.91 -0.02 2.43 16 41 H 0.11 3.84 6.30 -2.91 -0.02 3.82 16 42 H 0.09 2.98 7.76 -2.39 -0.02 2.96 16 43 H 0.11 2.82 8.14 -2.38 -0.02 2.80 16 44 H 0.09 2.38 6.42 -2.39 -0.02 2.37 16 Total: -1.00 -72.66 355.60 3.10 -69.56 By element: Atomic # 1 Polarization: 28.17 SS G_CDS: 0.23 Total: 28.40 kcal Atomic # 6 Polarization: -1.47 SS G_CDS: 4.49 Total: 3.01 kcal Atomic # 7 Polarization: -91.48 SS G_CDS: -3.56 Total: -95.04 kcal Atomic # 8 Polarization: -47.72 SS G_CDS: -0.08 Total: -47.80 kcal Atomic # 14 Polarization: 39.84 SS G_CDS: 2.03 Total: 41.87 kcal Total: -72.66 3.10 -69.56 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000373513835.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.806 kcal (2) G-P(sol) polarization free energy of solvation -72.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds