Wall clock time and date at job start Tue Mar 31 2020 11:19:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.47113 * 2 1 4 4 N 1.46903 * 109.47173 * 119.99778 * 2 1 3 5 5 C 1.46899 * 111.00221 * 175.00553 * 4 2 1 6 6 C 1.53239 * 109.34054 * 187.25747 * 5 4 2 7 7 N 1.47081 * 108.51709 * 306.16297 * 6 5 4 8 8 S 1.65601 * 120.88264 * 231.19219 * 7 6 5 9 9 O 1.42104 * 104.27757 * 206.07254 * 8 7 6 10 10 O 1.42100 * 104.27495 * 333.92601 * 8 7 6 11 11 C 1.81396 * 104.45301 * 89.99805 * 8 7 6 12 12 C 1.52998 * 109.47233 * 172.69731 * 11 8 7 13 13 C 1.50699 * 115.55237 * 39.93971 * 12 11 8 14 14 H 1.07999 * 119.99972 * 272.15573 * 13 12 11 15 15 C 1.37878 * 119.99749 * 92.14941 * 13 12 11 16 16 N 1.31516 * 120.00068 * 173.93928 * 15 13 12 17 17 Si 1.86800 * 119.99946 * 353.94098 * 15 13 12 18 18 H 1.48504 * 109.46753 * 93.63209 * 17 15 13 19 19 H 1.48499 * 109.46863 * 213.62610 * 17 15 13 20 20 H 1.48499 * 109.47409 * 333.63104 * 17 15 13 21 21 C 1.53007 * 117.49708 * 254.23331 * 12 11 8 22 22 C 1.53000 * 117.49953 * 185.61178 * 12 11 8 23 23 C 1.47081 * 118.23960 * 51.46113 * 7 6 5 24 24 C 1.46901 * 110.99906 * 299.30182 * 4 2 1 25 25 H 1.09004 * 109.46938 * 300.00100 * 1 2 3 26 26 H 1.08993 * 109.47223 * 60.00278 * 1 2 3 27 27 H 1.09004 * 109.46829 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47358 * 239.99800 * 2 1 3 29 29 H 1.09000 * 109.46482 * 299.99947 * 3 2 1 30 30 H 1.08998 * 109.47172 * 59.99686 * 3 2 1 31 31 H 1.08996 * 109.46774 * 180.02562 * 3 2 1 32 32 H 1.08999 * 109.49447 * 67.28684 * 5 4 2 33 33 H 1.09006 * 109.48550 * 307.20943 * 5 4 2 34 34 H 1.08997 * 109.62722 * 186.45921 * 6 5 4 35 35 H 1.08994 * 109.63289 * 65.87122 * 6 5 4 36 36 H 1.09000 * 109.47351 * 292.69699 * 11 8 7 37 37 H 1.09006 * 109.47241 * 52.69883 * 11 8 7 38 38 H 0.96996 * 120.00140 * 179.97438 * 16 15 13 39 39 H 1.08992 * 117.49983 * 359.97438 * 21 12 11 40 40 H 1.08998 * 117.49780 * 145.02392 * 21 12 11 41 41 H 1.08999 * 117.50462 * 214.97751 * 22 12 11 42 42 H 1.09005 * 117.49664 * 0.02562 * 22 12 11 43 43 H 1.09001 * 109.62295 * 68.24845 * 23 7 6 44 44 H 1.08994 * 109.63157 * 188.82714 * 23 7 6 45 45 H 1.09004 * 109.49629 * 292.70625 * 24 4 2 46 46 H 1.09008 * 109.49413 * 52.78906 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 3.4833 -0.8163 1.1753 6 6 3.9374 -1.6972 2.3441 7 7 3.3806 -1.1455 3.5886 8 16 4.3523 -0.8483 4.8962 9 8 3.4763 -0.9386 6.0115 10 8 5.4359 -1.7543 4.7406 11 6 4.9134 0.8610 4.6641 12 6 5.6788 1.3197 5.9069 13 6 6.5906 0.2914 6.5252 14 1 6.2063 -0.3968 7.2635 15 6 7.9153 0.2290 6.1481 16 7 8.7386 -0.5859 6.7708 17 14 8.5407 1.3019 4.7527 18 1 9.0957 2.5624 5.3081 19 1 9.6036 0.5781 4.0099 20 1 7.4202 1.6182 3.8309 21 6 4.9745 2.2978 6.8494 22 6 6.1234 2.7827 5.9629 23 6 1.9368 -0.8704 3.6431 24 6 1.5624 -0.0167 2.4210 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9564 0.8899 31 1 3.1300 1.4425 -0.0005 32 1 3.9336 0.1719 1.2680 33 1 3.7942 -1.2713 0.2348 34 1 5.0260 -1.6994 2.3994 35 1 3.5732 -2.7142 2.1993 36 1 5.5681 0.9136 3.7942 37 1 4.0505 1.5088 4.5092 38 1 9.6705 -0.6301 6.5053 39 1 3.9660 2.6147 6.5839 40 1 5.1704 2.1975 7.9170 41 1 7.0750 3.0014 6.4472 42 1 5.8701 3.4184 5.1144 43 1 1.3840 -1.8096 3.6207 44 1 1.7020 -0.3259 4.5576 45 1 2.0394 0.9605 2.4965 46 1 0.4801 0.1083 2.3841 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408191318.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:19:56 Heat of formation + Delta-G solvation = -57.591438 kcal Electronic energy + Delta-G solvation = -26675.889403 eV Core-core repulsion = 23113.801850 eV Total energy + Delta-G solvation = -3562.087553 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.161 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -40.34697 -38.86528 -38.01803 -36.89146 -36.58299 -34.34192 -32.37430 -31.87173 -30.14568 -28.06698 -27.70188 -26.86939 -24.75965 -23.38326 -22.48535 -21.30205 -20.59954 -19.54111 -18.81924 -18.30448 -17.27495 -17.09764 -16.75641 -16.56046 -16.01949 -15.63218 -15.62180 -15.51265 -15.04011 -14.87523 -14.68149 -14.56083 -14.24601 -13.80657 -13.65042 -13.35348 -13.19095 -12.96446 -12.85968 -12.79512 -12.66841 -12.64716 -12.43048 -12.30428 -12.14858 -12.07542 -11.93455 -11.87243 -11.71029 -11.54898 -11.41539 -10.95498 -10.74714 -10.38017 -9.97627 -9.14620 -8.38341 -6.54342 -0.58328 1.29519 1.32695 1.44567 1.95206 2.30798 2.91849 2.93256 3.01629 3.13618 3.35154 3.59483 3.87935 3.95162 4.02901 4.13630 4.19004 4.29362 4.32662 4.36568 4.38577 4.40791 4.45934 4.52616 4.57632 4.70476 4.78485 4.82181 4.83095 4.86628 4.92497 4.96048 5.03396 5.08237 5.11075 5.13960 5.21631 5.37680 5.43953 5.45816 5.59257 5.66349 6.12016 6.13827 6.23239 6.59434 7.22537 8.78545 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.018320 B = 0.004775 C = 0.004632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1528.024520 B = 5862.937175 C = 6043.482755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.075 3.925 3 C -0.187 4.187 4 N -0.536 5.536 5 C 0.044 3.956 6 C 0.118 3.882 7 N -1.008 6.008 8 S 2.622 3.378 9 O -0.998 6.998 10 O -0.989 6.989 11 C -0.570 4.570 12 C -0.030 4.030 13 C -0.537 4.537 14 H 0.027 0.973 15 C 0.038 3.962 16 N -0.933 5.933 17 Si 0.932 3.068 18 H -0.258 1.258 19 H -0.293 1.293 20 H -0.219 1.219 21 C -0.165 4.165 22 C -0.173 4.173 23 C 0.118 3.882 24 C 0.038 3.962 25 H 0.058 0.942 26 H 0.070 0.930 27 H 0.059 0.941 28 H 0.087 0.913 29 H 0.071 0.929 30 H 0.056 0.944 31 H 0.050 0.950 32 H 0.044 0.956 33 H 0.104 0.896 34 H 0.082 0.918 35 H 0.079 0.921 36 H 0.132 0.868 37 H 0.151 0.849 38 H 0.270 0.730 39 H 0.116 0.884 40 H 0.078 0.922 41 H 0.077 0.923 42 H 0.116 0.884 43 H 0.078 0.922 44 H 0.091 0.909 45 H 0.046 0.954 46 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.656 6.806 -18.297 25.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.033 4.033 3 C -0.245 4.245 4 N -0.261 5.261 5 C -0.086 4.086 6 C -0.007 4.007 7 N -0.847 5.847 8 S 2.721 3.279 9 O -0.988 6.988 10 O -0.979 6.979 11 C -0.702 4.702 12 C -0.032 4.032 13 C -0.574 4.574 14 H 0.045 0.955 15 C -0.163 4.163 16 N -0.570 5.570 17 Si 0.754 3.246 18 H -0.183 1.183 19 H -0.220 1.220 20 H -0.141 1.141 21 C -0.202 4.202 22 C -0.211 4.211 23 C -0.007 4.007 24 C -0.091 4.091 25 H 0.077 0.923 26 H 0.089 0.911 27 H 0.078 0.922 28 H 0.106 0.894 29 H 0.090 0.910 30 H 0.075 0.925 31 H 0.069 0.931 32 H 0.062 0.938 33 H 0.122 0.878 34 H 0.100 0.900 35 H 0.098 0.902 36 H 0.150 0.850 37 H 0.169 0.831 38 H 0.079 0.921 39 H 0.134 0.866 40 H 0.096 0.904 41 H 0.096 0.904 42 H 0.134 0.866 43 H 0.097 0.903 44 H 0.109 0.891 45 H 0.064 0.936 46 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -16.510 5.581 -17.577 24.752 hybrid contribution 1.408 1.080 -0.081 1.776 sum -15.102 6.661 -17.658 24.171 Atomic orbital electron populations 1.21858 0.93356 1.02401 1.02358 1.21795 0.96481 0.92444 0.92531 1.22481 1.01232 0.97980 1.02855 1.62115 1.10096 1.51542 1.02321 1.22489 0.88370 0.98991 0.98720 1.21634 0.98371 0.98374 0.82327 1.57961 1.18328 1.79002 1.29410 1.04410 0.72549 0.78130 0.72812 1.93427 1.66096 1.87616 1.51666 1.93495 1.56516 1.62258 1.85595 1.30151 1.10342 1.23199 1.06500 1.18707 1.00013 0.90578 0.93948 1.20510 0.95005 1.17229 1.24703 0.95475 1.25948 0.96480 0.95827 0.98035 1.70047 1.05421 1.39314 1.42232 0.86016 0.79456 0.78786 0.80351 1.18261 1.21979 1.14112 1.23074 0.96937 1.03223 0.96975 1.23035 0.98876 0.96203 1.02955 1.21792 0.78804 1.01097 0.99016 1.22682 1.02215 0.95207 0.88974 0.92276 0.91105 0.92237 0.89438 0.91014 0.92474 0.93084 0.93802 0.87832 0.89972 0.90249 0.84961 0.83087 0.92084 0.86626 0.90386 0.90401 0.86563 0.90338 0.89098 0.93563 0.87326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.54 9.00 71.98 0.65 -0.89 16 2 C 0.08 0.99 2.96 44.92 0.13 1.12 16 3 C -0.19 -2.34 8.51 71.98 0.61 -1.73 16 4 N -0.54 -9.36 4.61 -869.03 -4.01 -13.37 16 5 C 0.04 0.84 5.14 86.38 0.44 1.28 16 6 C 0.12 3.08 6.46 86.35 0.56 3.64 16 7 N -1.01 -30.44 3.25 -511.34 -1.66 -32.10 16 8 S 2.62 110.38 4.56 -56.49 -0.26 110.12 16 9 O -1.00 -47.09 16.78 -127.65 -2.14 -49.23 16 10 O -0.99 -51.47 16.00 -127.65 -2.04 -53.51 16 11 C -0.57 -20.84 6.15 71.98 0.44 -20.40 16 12 C -0.03 -1.35 1.12 -52.93 -0.06 -1.41 16 13 C -0.54 -31.45 7.55 25.60 0.19 -31.26 16 14 H 0.03 1.84 8.06 -2.91 -0.02 1.82 16 15 C 0.04 2.26 5.46 84.65 0.46 2.72 16 16 N -0.93 -60.31 13.96 21.45 0.30 -60.01 16 17 Si 0.93 43.17 24.98 68.60 1.71 44.88 16 18 H -0.26 -11.15 7.11 99.48 0.71 -10.44 16 19 H -0.29 -13.70 7.11 99.48 0.71 -13.00 16 20 H -0.22 -8.61 5.46 99.48 0.54 -8.07 16 21 C -0.17 -6.32 9.88 30.60 0.30 -6.02 16 22 C -0.17 -6.52 7.54 30.60 0.23 -6.29 16 23 C 0.12 2.82 6.50 86.50 0.56 3.38 16 24 C 0.04 0.68 4.78 86.54 0.41 1.09 16 25 H 0.06 0.62 6.27 -2.38 -0.01 0.61 16 26 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 27 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 28 H 0.09 1.08 8.07 -2.39 -0.02 1.06 16 29 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.06 0.75 6.56 -2.39 -0.02 0.73 16 31 H 0.05 0.72 6.69 -2.39 -0.02 0.70 16 32 H 0.04 0.83 6.81 -2.39 -0.02 0.82 16 33 H 0.10 1.59 8.05 -2.38 -0.02 1.57 16 34 H 0.08 2.34 7.19 -2.39 -0.02 2.32 16 35 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 36 H 0.13 4.49 6.56 -2.39 -0.02 4.47 16 37 H 0.15 4.02 7.95 -2.39 -0.02 4.00 16 38 H 0.27 16.17 8.31 -92.71 -0.77 15.40 16 39 H 0.12 3.49 8.08 -2.39 -0.02 3.47 16 40 H 0.08 3.20 8.14 -2.39 -0.02 3.18 16 41 H 0.08 3.18 7.01 -2.39 -0.02 3.16 16 42 H 0.12 3.46 8.14 -2.38 -0.02 3.44 16 43 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 44 H 0.09 2.18 7.18 -2.39 -0.02 2.16 16 45 H 0.05 0.79 6.71 -2.38 -0.02 0.77 16 46 H 0.11 1.47 5.97 -2.38 -0.01 1.46 16 Total: -1.00 -80.22 357.33 -2.37 -82.59 By element: Atomic # 1 Polarization: 24.61 SS G_CDS: 0.79 Total: 25.40 kcal Atomic # 6 Polarization: -59.70 SS G_CDS: 4.94 Total: -54.76 kcal Atomic # 7 Polarization: -100.11 SS G_CDS: -5.37 Total: -105.49 kcal Atomic # 8 Polarization: -98.56 SS G_CDS: -4.19 Total: -102.75 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 1.71 Total: 44.88 kcal Atomic # 16 Polarization: 110.38 SS G_CDS: -0.26 Total: 110.12 kcal Total: -80.22 -2.37 -82.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408191318.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.998 kcal (2) G-P(sol) polarization free energy of solvation -80.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds