Wall clock time and date at job start Tue Mar 31 2020 11:18:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47196 * 2 1 4 4 N 1.46494 * 109.46977 * 180.02562 * 3 2 1 5 5 C 1.46768 * 124.34533 * 90.00131 * 4 3 2 6 6 C 1.54484 * 105.47249 * 163.00139 * 5 4 3 7 7 H 1.08994 * 110.97202 * 267.26297 * 6 5 4 8 8 C 1.50695 * 110.96836 * 143.53541 * 6 5 4 9 9 O 1.21283 * 120.00344 * 3.09056 * 8 6 5 10 10 N 1.34777 * 120.00094 * 183.09503 * 8 6 5 11 11 C 1.39236 * 120.00221 * 175.47667 * 10 8 6 12 12 C 1.39485 * 119.83506 * 216.01082 * 11 10 8 13 13 C 1.36367 * 120.17109 * 180.02562 * 12 11 10 14 14 C 1.40873 * 119.82930 * 0.02562 * 13 12 11 15 15 C 1.41146 * 120.16631 * 179.97438 * 14 13 12 16 16 H 1.08003 * 119.99675 * 24.80893 * 15 14 13 17 17 C 1.39904 * 120.00278 * 205.07922 * 15 14 13 18 18 N 1.30869 * 119.99552 * 15.30884 * 17 15 14 19 19 Si 1.86796 * 120.00234 * 195.30056 * 17 15 14 20 20 H 1.48497 * 109.47134 * 60.00379 * 19 17 15 21 21 H 1.48500 * 109.47098 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.47374 * 300.00375 * 19 17 15 23 23 C 1.40868 * 119.67097 * 0.25355 * 14 13 12 24 24 C 1.36378 * 119.82475 * 359.46660 * 23 14 13 25 25 C 1.54634 * 101.79416 * 25.39972 * 6 5 4 26 26 C 1.34411 * 124.35518 * 270.02299 * 4 3 2 27 27 O 1.21286 * 124.94058 * 0.40262 * 26 4 3 28 28 H 1.09006 * 109.47023 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47040 * 299.99415 * 1 2 3 30 30 H 1.08991 * 109.47612 * 59.99622 * 1 2 3 31 31 H 1.08997 * 109.46508 * 240.00092 * 2 1 3 32 32 H 1.09000 * 109.47397 * 120.00583 * 2 1 3 33 33 H 1.09002 * 109.46648 * 60.00346 * 3 2 1 34 34 H 1.08995 * 109.46769 * 300.00321 * 3 2 1 35 35 H 1.09000 * 110.24642 * 44.00458 * 5 4 3 36 36 H 1.08995 * 110.32382 * 282.04321 * 5 4 3 37 37 H 0.97009 * 119.99735 * 355.47018 * 10 8 6 38 38 H 1.07998 * 119.91037 * 0.02562 * 12 11 10 39 39 H 1.08007 * 120.08595 * 180.02562 * 13 12 11 40 40 H 0.97008 * 119.99913 * 179.97438 * 18 17 15 41 41 H 1.07999 * 120.08656 * 179.74254 * 23 14 13 42 42 H 1.08002 * 119.91374 * 180.29003 * 24 23 14 43 43 H 1.08995 * 110.48828 * 93.90138 * 25 6 5 44 44 H 1.09006 * 110.48249 * 216.53853 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.3325 1.4426 -1.2128 6 6 5.7408 1.8778 -0.7503 7 1 5.8672 2.9561 -0.8466 8 6 6.8108 1.1418 -1.5147 9 8 6.5031 0.3738 -2.4016 10 7 8.1097 1.3368 -1.2127 11 6 9.0934 0.5880 -1.8533 12 6 10.2294 0.1880 -1.1497 13 6 11.1974 -0.5450 -1.7705 14 6 11.0480 -0.8977 -3.1261 15 6 12.0457 -1.6558 -3.7758 16 1 12.6980 -2.2959 -3.2003 17 6 12.1934 -1.5738 -5.1646 18 7 11.6303 -0.5947 -5.8257 19 14 13.1943 -2.8615 -6.0752 20 1 12.5927 -4.2014 -5.8571 21 1 13.1975 -2.5502 -7.5272 22 1 14.5890 -2.8561 -5.5652 23 6 9.9007 -0.4851 -3.8317 24 6 8.9386 0.2428 -3.1958 25 6 5.7307 1.4523 0.7363 26 6 4.2639 1.4418 1.1087 27 8 3.8356 1.4342 2.2434 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5138 -0.8898 31 1 1.8932 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 1.6767 1.9563 0.8901 34 1 1.6766 1.9563 -0.8899 35 1 3.9377 2.1532 -1.9389 36 1 4.3698 0.4431 -1.6458 37 1 8.3593 1.9989 -0.5491 38 1 10.3426 0.4596 -0.1106 39 1 12.0762 -0.8544 -1.2242 40 1 11.7330 -0.5375 -6.7887 41 1 9.7814 -0.7482 -4.8723 42 1 8.0562 0.5559 -3.7341 43 1 6.1605 0.4573 0.8513 44 1 6.2741 2.1761 1.3439 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000411274376.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:18:44 Heat of formation + Delta-G solvation = -75.144118 kcal Electronic energy + Delta-G solvation = -25490.987948 eV Core-core repulsion = 21792.695302 eV Total energy + Delta-G solvation = -3698.292646 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.97696 -40.74039 -39.05729 -37.49681 -36.19501 -35.78743 -34.70495 -32.58996 -31.37369 -30.74351 -28.77296 -27.59240 -26.63912 -24.42910 -23.15346 -22.75017 -22.43685 -20.93055 -20.44549 -19.23585 -18.72455 -18.05536 -17.70421 -17.09429 -16.95318 -16.40699 -16.06823 -15.74764 -15.57117 -15.14897 -14.90897 -14.79611 -14.61080 -14.45276 -14.15396 -13.89976 -13.72281 -13.58686 -13.25862 -13.08178 -12.89585 -12.76922 -12.75789 -12.53408 -12.43696 -12.35711 -12.21969 -11.73755 -11.68687 -11.50278 -11.15817 -11.02202 -10.76998 -10.50715 -9.77975 -9.41839 -8.84707 -8.57761 -6.26808 0.83503 1.17750 1.38498 1.44597 1.46652 1.50906 1.76815 1.88390 2.21385 2.34943 2.76689 3.18329 3.34363 3.73396 3.83621 3.84969 3.98497 4.02201 4.19405 4.31532 4.47344 4.48951 4.52264 4.53208 4.61619 4.64847 4.78321 4.85129 4.94302 5.02751 5.12379 5.12809 5.14728 5.22376 5.30396 5.33402 5.46763 5.53745 5.70917 5.90102 6.01769 6.10956 6.13864 6.36822 6.70071 6.74654 6.94652 7.03089 7.05040 7.41622 8.34405 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.024481 B = 0.002451 C = 0.002329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.473383 B =11419.305582 C =12021.564106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.141 4.141 3 C 0.122 3.878 4 N -0.614 5.614 5 C 0.117 3.883 6 C -0.103 4.103 7 H 0.156 0.844 8 C 0.512 3.488 9 O -0.568 6.568 10 N -0.637 5.637 11 C 0.007 3.993 12 C -0.098 4.098 13 C -0.226 4.226 14 C 0.071 3.929 15 C -0.494 4.494 16 H 0.078 0.922 17 C 0.030 3.970 18 N -0.826 5.826 19 Si 0.983 3.017 20 H -0.263 1.263 21 H -0.269 1.269 22 H -0.257 1.257 23 C -0.184 4.184 24 C -0.098 4.098 25 C -0.138 4.138 26 C 0.514 3.486 27 O -0.574 6.574 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.071 0.929 31 H 0.062 0.938 32 H 0.041 0.959 33 H 0.077 0.923 34 H 0.107 0.893 35 H 0.111 0.889 36 H 0.071 0.929 37 H 0.419 0.581 38 H 0.135 0.865 39 H 0.107 0.893 40 H 0.287 0.713 41 H 0.099 0.901 42 H 0.101 0.899 43 H 0.102 0.898 44 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.939 7.446 8.084 18.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.180 4.180 3 C 0.001 3.999 4 N -0.346 5.346 5 C -0.006 4.006 6 C -0.125 4.125 7 H 0.174 0.826 8 C 0.299 3.701 9 O -0.447 6.447 10 N -0.281 5.281 11 C -0.087 4.087 12 C -0.118 4.118 13 C -0.246 4.246 14 C 0.068 3.932 15 C -0.523 4.523 16 H 0.096 0.904 17 C -0.184 4.184 18 N -0.453 5.453 19 Si 0.803 3.197 20 H -0.187 1.187 21 H -0.193 1.193 22 H -0.181 1.181 23 C -0.204 4.204 24 C -0.118 4.118 25 C -0.178 4.178 26 C 0.303 3.697 27 O -0.454 6.454 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.090 0.910 31 H 0.081 0.919 32 H 0.060 0.940 33 H 0.096 0.904 34 H 0.125 0.875 35 H 0.129 0.871 36 H 0.090 0.910 37 H 0.257 0.743 38 H 0.153 0.847 39 H 0.125 0.875 40 H 0.097 0.903 41 H 0.117 0.883 42 H 0.119 0.881 43 H 0.120 0.880 44 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -15.515 7.034 7.820 18.745 hybrid contribution 0.713 -0.506 -0.445 0.981 sum -14.802 6.529 7.375 17.780 Atomic orbital electron populations 1.21662 0.93331 1.02489 1.02737 1.21889 0.97712 0.96923 1.01468 1.21634 0.76755 0.97292 1.04240 1.48467 1.07078 1.72068 1.07026 1.22029 0.88063 1.03700 0.86817 1.22162 0.92557 1.03629 0.94120 0.82644 1.20737 0.83623 0.82048 0.83652 1.90718 1.82344 1.38683 1.32951 1.42803 1.04301 1.39065 1.41962 1.17208 0.93074 1.06793 0.91593 1.20415 0.93793 0.98800 0.98804 1.20821 1.00865 1.06914 0.96035 1.18027 0.91907 0.90729 0.92520 1.19799 1.15517 1.24030 0.92992 0.90363 1.26791 0.96244 0.96841 0.98532 1.69895 1.37252 1.27887 1.10216 0.85241 0.78979 0.78399 0.77033 1.18739 1.19349 1.18074 1.20977 0.94521 1.04754 1.00116 1.20594 0.97820 0.99757 0.93638 1.22372 0.94090 1.06101 0.95237 1.21169 0.90056 0.74406 0.84094 1.90702 1.79427 1.52677 1.22600 0.92270 0.92269 0.91041 0.91926 0.93994 0.90444 0.87494 0.87114 0.91049 0.74282 0.84750 0.87489 0.90255 0.88289 0.88131 0.87990 0.84258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.79 9.91 71.98 0.71 -1.07 16 2 C -0.14 -2.38 6.26 30.59 0.19 -2.19 16 3 C 0.12 1.93 5.93 86.38 0.51 2.44 16 4 N -0.61 -11.71 2.93 -817.92 -2.40 -14.11 16 5 C 0.12 2.08 6.69 86.83 0.58 2.66 16 6 C -0.10 -1.75 3.54 -10.48 -0.04 -1.78 16 7 H 0.16 1.53 8.14 -2.39 -0.02 1.51 16 8 C 0.51 14.28 6.89 87.66 0.60 14.88 16 9 O -0.57 -21.61 12.99 -3.04 -0.04 -21.64 16 10 N -0.64 -18.14 5.29 -303.12 -1.60 -19.74 16 11 C 0.01 0.28 6.29 38.56 0.24 0.52 16 12 C -0.10 -3.92 9.90 22.13 0.22 -3.70 16 13 C -0.23 -10.62 9.74 22.48 0.22 -10.40 16 14 C 0.07 3.82 5.58 -21.28 -0.12 3.70 16 15 C -0.49 -26.64 9.05 23.39 0.21 -26.43 16 16 H 0.08 4.02 7.89 -2.91 -0.02 4.00 16 17 C 0.03 1.54 5.19 85.24 0.44 1.98 16 18 N -0.83 -43.86 10.82 21.82 0.24 -43.62 16 19 Si 0.98 38.50 29.59 68.60 2.03 40.53 16 20 H -0.26 -10.17 7.11 99.48 0.71 -9.46 16 21 H -0.27 -10.01 7.11 99.48 0.71 -9.30 16 22 H -0.26 -9.60 7.11 99.48 0.71 -8.89 16 23 C -0.18 -10.00 8.63 22.48 0.19 -9.80 16 24 C -0.10 -4.75 8.61 22.13 0.19 -4.56 16 25 C -0.14 -2.38 6.40 30.61 0.20 -2.18 16 26 C 0.51 11.84 8.02 87.92 0.71 12.55 16 27 O -0.57 -17.69 17.60 -3.05 -0.05 -17.74 16 28 H 0.06 0.72 8.14 -2.38 -0.02 0.71 16 29 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.08 1.33 7.93 -2.39 -0.02 1.31 16 34 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 36 H 0.07 1.66 7.00 -2.39 -0.02 1.64 16 37 H 0.42 8.14 8.82 -92.70 -0.82 7.32 16 38 H 0.13 4.15 8.06 -2.91 -0.02 4.13 16 39 H 0.11 4.65 8.06 -2.91 -0.02 4.63 16 40 H 0.29 13.83 8.30 -92.70 -0.77 13.06 16 41 H 0.10 5.75 6.07 -2.91 -0.02 5.73 16 42 H 0.10 4.89 6.27 -2.91 -0.02 4.88 16 43 H 0.10 2.02 7.89 -2.39 -0.02 2.00 16 44 H 0.14 1.62 8.14 -2.38 -0.02 1.60 16 Total: -1.00 -72.47 366.75 3.44 -69.04 By element: Atomic # 1 Polarization: 30.48 SS G_CDS: 0.20 Total: 30.68 kcal Atomic # 6 Polarization: -28.44 SS G_CDS: 5.07 Total: -23.38 kcal Atomic # 7 Polarization: -73.72 SS G_CDS: -3.77 Total: -77.48 kcal Atomic # 8 Polarization: -39.29 SS G_CDS: -0.09 Total: -39.39 kcal Atomic # 14 Polarization: 38.50 SS G_CDS: 2.03 Total: 40.53 kcal Total: -72.47 3.44 -69.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411274376.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.109 kcal (2) G-P(sol) polarization free energy of solvation -72.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds