Wall clock time and date at job start Tue Mar 31 2020 11:20:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.46973 * 2 1 4 4 N 1.46501 * 109.47021 * 179.97438 * 3 2 1 5 5 C 1.34538 * 126.68963 * 275.27519 * 4 3 2 6 6 O 1.21533 * 123.77157 * 359.94631 * 5 4 3 7 7 N 1.33792 * 112.45479 * 180.12584 * 5 4 3 8 8 C 1.40217 * 124.17701 * 179.86524 * 7 5 4 9 9 C 1.39244 * 119.94029 * 5.96429 * 8 7 5 10 10 C 1.38497 * 120.43277 * 179.97438 * 9 8 7 11 11 C 1.37672 * 120.31793 * 359.72596 * 10 9 8 12 12 C 1.40736 * 119.87415 * 0.53377 * 11 10 9 13 13 C 1.41413 * 120.21385 * 179.73698 * 12 11 10 14 14 H 1.08005 * 119.99476 * 145.06070 * 13 12 11 15 15 C 1.39926 * 120.00266 * 324.79201 * 13 12 11 16 16 N 1.30837 * 119.99987 * 4.43594 * 15 13 12 17 17 Si 1.86801 * 120.00270 * 184.44267 * 15 13 12 18 18 H 1.48498 * 109.46951 * 59.99818 * 17 15 13 19 19 H 1.48496 * 109.47104 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.46710 * 299.99941 * 17 15 13 21 21 C 1.38188 * 119.94056 * 185.95087 * 8 7 5 22 22 C 1.34771 * 111.64445 * 359.59466 * 7 5 4 23 23 O 1.21233 * 127.15271 * 180.26765 * 22 7 5 24 24 C 1.47308 * 126.69371 * 94.96167 * 4 3 2 25 25 H 1.08997 * 110.59999 * 298.56598 * 24 4 3 26 26 C 1.53004 * 110.72689 * 61.44616 * 24 4 3 27 27 C 1.53004 * 109.47071 * 54.35945 * 26 24 4 28 28 H 1.09008 * 109.47224 * 300.00404 * 1 2 3 29 29 H 1.09000 * 109.47198 * 59.99816 * 1 2 3 30 30 H 1.09001 * 109.47280 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47321 * 239.99769 * 2 1 3 32 32 H 1.09003 * 109.46987 * 119.99445 * 2 1 3 33 33 H 1.09001 * 109.47319 * 60.00428 * 3 2 1 34 34 H 1.08996 * 109.46891 * 299.99904 * 3 2 1 35 35 H 1.07998 * 119.78449 * 0.03243 * 9 8 7 36 36 H 1.08004 * 119.83771 * 179.97438 * 10 9 8 37 37 H 1.07999 * 120.06566 * 180.29563 * 11 10 9 38 38 H 0.96994 * 120.00062 * 180.02562 * 16 15 13 39 39 H 1.07994 * 120.16608 * 0.02562 * 21 8 7 40 40 H 1.08998 * 109.47172 * 174.36164 * 26 24 4 41 41 H 1.09002 * 109.47245 * 294.36519 * 26 24 4 42 42 H 1.08994 * 109.47389 * 304.98621 * 27 26 24 43 43 H 1.09005 * 109.46628 * 64.98704 * 27 26 24 44 44 H 1.09003 * 109.47077 * 184.97912 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5049 1.4426 0.0006 5 6 4.3083 1.3436 1.0752 6 8 3.9014 1.2394 2.2157 7 7 5.6053 1.3765 0.7484 8 6 6.6536 1.2944 1.6760 9 6 6.3766 1.0455 3.0177 10 6 7.4042 0.9618 3.9424 11 6 8.7125 1.1185 3.5436 12 6 9.0072 1.3760 2.1917 13 6 10.3481 1.5437 1.7751 14 1 10.6596 1.1907 0.8030 15 6 11.2699 2.1718 2.6199 16 7 10.9143 2.5261 3.8281 17 14 13.0083 2.5048 2.0226 18 1 12.9608 3.3837 0.8265 19 1 13.7814 3.1752 3.0986 20 1 13.6641 1.2206 1.6675 21 6 7.9599 1.4604 1.2569 22 6 5.7797 1.4924 -0.5829 23 8 6.8326 1.5434 -1.1817 24 6 4.3857 1.5446 -1.1758 25 1 4.2239 0.7036 -1.8500 26 6 4.1611 2.8696 -1.9071 27 6 4.3276 4.0297 -0.9235 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 1.6767 1.9564 0.8900 34 1 1.6766 1.9563 -0.8900 35 1 5.3537 0.9158 3.3392 36 1 7.1783 0.7687 4.9808 37 1 9.5110 1.0477 4.2673 38 1 11.5531 2.9618 4.4135 39 1 8.1757 1.6537 0.2165 40 1 4.8894 2.9683 -2.7120 41 1 3.1540 2.8885 -2.3239 42 1 3.6608 3.8841 -0.0737 43 1 5.3595 4.0642 -0.5739 44 1 4.0814 4.9671 -1.4222 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000414360086.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:20:29 Heat of formation + Delta-G solvation = -19.046131 kcal Electronic energy + Delta-G solvation = -27012.061720 eV Core-core repulsion = 23316.201665 eV Total energy + Delta-G solvation = -3695.860055 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.48780 -38.50117 -37.84975 -36.43735 -35.44863 -34.27916 -33.31752 -32.03767 -29.80886 -29.22422 -27.38786 -26.13070 -25.34482 -23.46103 -22.64376 -21.42923 -21.32266 -20.00277 -19.76070 -17.88154 -17.08105 -16.65537 -15.92205 -15.80221 -15.34980 -15.08098 -14.95974 -14.67134 -14.45254 -14.34388 -13.89091 -13.59790 -13.38222 -13.10744 -12.88718 -12.44100 -12.40532 -12.20035 -11.94095 -11.75036 -11.68910 -11.52367 -11.38133 -11.23309 -11.17553 -11.07193 -10.94906 -10.83377 -10.50694 -9.93680 -9.78987 -9.46874 -9.18955 -8.99792 -8.93583 -7.42544 -7.01906 -6.57585 -4.37727 1.83558 2.27475 2.61519 2.83975 3.11199 3.11814 3.15093 3.22838 3.60960 4.00975 4.06892 4.41172 4.61352 4.69777 4.74492 4.79202 4.96778 5.03635 5.06595 5.25680 5.37248 5.44570 5.53536 5.58294 5.64811 5.71569 5.77454 5.85354 5.94534 5.97113 6.02355 6.12772 6.31773 6.42663 6.73600 6.88156 7.03258 7.05846 7.31206 7.42796 7.57044 7.70020 7.97103 8.06058 8.08650 8.24009 8.45890 8.67560 8.94939 8.96698 10.33715 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.021402 B = 0.003654 C = 0.003296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.987385 B = 7661.411317 C = 8492.024331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.147 4.147 3 C 0.154 3.846 4 N -0.625 5.625 5 C 0.700 3.300 6 O -0.529 6.529 7 N -0.506 5.506 8 C 0.128 3.872 9 C -0.235 4.235 10 C -0.102 4.102 11 C -0.150 4.150 12 C 0.115 3.885 13 C -0.463 4.463 14 H 0.076 0.924 15 C 0.071 3.929 16 N -0.813 5.813 17 Si 0.916 3.084 18 H -0.266 1.266 19 H -0.279 1.279 20 H -0.266 1.266 21 C -0.222 4.222 22 C 0.519 3.481 23 O -0.452 6.452 24 C 0.092 3.908 25 H 0.122 0.878 26 C -0.117 4.117 27 C -0.160 4.160 28 H 0.057 0.943 29 H 0.055 0.945 30 H 0.057 0.943 31 H 0.065 0.935 32 H 0.071 0.929 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.131 0.869 36 H 0.096 0.904 37 H 0.131 0.869 38 H 0.278 0.722 39 H 0.126 0.874 40 H 0.089 0.911 41 H 0.081 0.919 42 H 0.059 0.941 43 H 0.057 0.943 44 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.651 -0.475 -9.911 19.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.185 4.185 3 C 0.033 3.967 4 N -0.364 5.364 5 C 0.403 3.597 6 O -0.402 6.402 7 N -0.242 5.242 8 C 0.039 3.961 9 C -0.255 4.255 10 C -0.121 4.121 11 C -0.170 4.170 12 C 0.112 3.888 13 C -0.494 4.494 14 H 0.094 0.906 15 C -0.144 4.144 16 N -0.441 5.441 17 Si 0.741 3.259 18 H -0.191 1.191 19 H -0.205 1.205 20 H -0.190 1.190 21 C -0.243 4.243 22 C 0.306 3.694 23 O -0.321 6.321 24 C -0.016 4.016 25 H 0.139 0.861 26 C -0.155 4.155 27 C -0.218 4.218 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.083 0.917 32 H 0.089 0.911 33 H 0.104 0.896 34 H 0.104 0.896 35 H 0.148 0.852 36 H 0.115 0.885 37 H 0.148 0.852 38 H 0.089 0.911 39 H 0.143 0.857 40 H 0.108 0.892 41 H 0.099 0.901 42 H 0.078 0.922 43 H 0.076 0.924 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -16.286 -0.378 -9.373 18.794 hybrid contribution 0.791 0.224 -0.202 0.846 sum -15.496 -0.154 -9.575 18.216 Atomic orbital electron populations 1.21676 0.94816 1.02122 1.01950 1.21987 0.96271 0.97143 1.03134 1.21337 0.74624 0.97240 1.03516 1.47753 1.05939 1.77130 1.05620 1.15882 0.80655 0.77975 0.85151 1.90840 1.76802 1.53929 1.18631 1.43783 1.07096 1.64400 1.08944 1.17599 0.84867 1.05645 0.87944 1.20973 1.00345 1.13170 0.91009 1.20674 0.93299 1.00994 0.97133 1.21737 0.95116 1.02483 0.97663 1.17470 0.92347 0.87989 0.91020 1.19438 0.93259 1.34456 1.02229 0.90573 1.25846 1.00414 0.93941 0.94162 1.69746 1.36108 1.31716 1.06506 0.86244 0.81145 0.79403 0.79116 1.19100 1.20452 1.19032 1.21454 0.89536 1.11891 1.01420 1.20735 0.90976 0.75611 0.82083 1.90745 1.30219 1.45117 1.66049 1.22194 0.87612 1.01787 0.89979 0.86056 1.21673 1.03476 0.91769 0.98624 1.21836 1.02768 0.97750 0.99411 0.92353 0.92602 0.92348 0.91666 0.91051 0.89612 0.89638 0.85192 0.88546 0.85182 0.91100 0.85658 0.89213 0.90064 0.92209 0.92353 0.91732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 9.91 37.16 0.37 -0.59 16 2 C -0.15 -1.25 6.26 -26.73 -0.17 -1.42 16 3 C 0.15 1.39 5.98 -4.04 -0.02 1.37 16 4 N -0.62 -7.91 1.76 -172.40 -0.30 -8.21 16 5 C 0.70 12.55 8.08 -88.01 -0.71 11.84 16 6 O -0.53 -10.86 14.38 5.34 0.08 -10.78 16 7 N -0.51 -10.15 2.83 -64.40 -0.18 -10.33 16 8 C 0.13 3.09 6.55 -83.66 -0.55 2.54 16 9 C -0.23 -5.71 9.27 -39.11 -0.36 -6.07 16 10 C -0.10 -2.51 10.02 -39.69 -0.40 -2.90 16 11 C -0.15 -4.02 8.67 -38.85 -0.34 -4.36 16 12 C 0.11 3.17 5.54 -106.84 -0.59 2.58 16 13 C -0.46 -12.73 9.04 -37.74 -0.34 -13.07 16 14 H 0.08 2.03 7.85 -52.48 -0.41 1.62 16 15 C 0.07 1.85 5.42 -17.34 -0.09 1.75 16 16 N -0.81 -21.60 10.63 55.55 0.59 -21.01 16 17 Si 0.92 19.49 29.56 -169.99 -5.03 14.47 16 18 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 19 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 20 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 21 C -0.22 -5.80 9.06 -38.70 -0.35 -6.15 16 22 C 0.52 9.10 6.42 -10.56 -0.07 9.03 16 23 O -0.45 -9.11 15.06 5.60 0.08 -9.03 16 24 C 0.09 1.08 3.78 -68.21 -0.26 0.82 16 25 H 0.12 1.11 8.14 -51.93 -0.42 0.68 16 26 C -0.12 -1.09 5.77 -26.73 -0.15 -1.24 16 27 C -0.16 -1.82 9.39 37.16 0.35 -1.47 16 28 H 0.06 0.38 8.14 -51.92 -0.42 -0.04 16 29 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.09 0.84 8.12 -51.93 -0.42 0.42 16 34 H 0.09 0.52 7.54 -51.93 -0.39 0.13 16 35 H 0.13 3.10 5.15 -52.49 -0.27 2.83 16 36 H 0.10 2.11 8.06 -52.48 -0.42 1.69 16 37 H 0.13 3.57 6.17 -52.49 -0.32 3.24 16 38 H 0.28 6.78 8.30 -40.82 -0.34 6.44 16 39 H 0.13 3.28 5.35 -52.49 -0.28 2.99 16 40 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.08 0.52 7.65 -51.93 -0.40 0.12 16 42 H 0.06 0.72 7.30 -51.93 -0.38 0.34 16 43 H 0.06 0.84 7.46 -51.93 -0.39 0.45 16 44 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 358.76 15.07 5.41 5.41 Total: -1.00 -31.57 358.76 -9.24 -40.81 By element: Atomic # 1 Polarization: 12.20 SS G_CDS: -6.20 Total: 6.00 kcal Atomic # 6 Polarization: -3.64 SS G_CDS: -3.69 Total: -7.33 kcal Atomic # 7 Polarization: -39.66 SS G_CDS: 0.10 Total: -39.56 kcal Atomic # 8 Polarization: -19.96 SS G_CDS: 0.16 Total: -19.80 kcal Atomic # 14 Polarization: 19.49 SS G_CDS: -5.03 Total: 14.47 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -31.57 -9.24 -40.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414360086.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.768 kcal (2) G-P(sol) polarization free energy of solvation -31.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds