Wall clock time and date at job start Tue Mar 31 2020 11:20:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.46973 * 2 1 4 4 N 1.46501 * 109.47021 * 179.97438 * 3 2 1 5 5 C 1.34538 * 126.68963 * 275.27519 * 4 3 2 6 6 O 1.21533 * 123.77157 * 359.94631 * 5 4 3 7 7 N 1.33792 * 112.45479 * 180.12584 * 5 4 3 8 8 C 1.40217 * 124.17701 * 179.86524 * 7 5 4 9 9 C 1.39244 * 119.94029 * 5.96429 * 8 7 5 10 10 C 1.38497 * 120.43277 * 179.97438 * 9 8 7 11 11 C 1.37672 * 120.31793 * 359.72596 * 10 9 8 12 12 C 1.40736 * 119.87415 * 0.53377 * 11 10 9 13 13 C 1.41413 * 120.21385 * 179.73698 * 12 11 10 14 14 H 1.08005 * 119.99476 * 145.06070 * 13 12 11 15 15 C 1.39926 * 120.00266 * 324.79201 * 13 12 11 16 16 N 1.30837 * 119.99987 * 4.43594 * 15 13 12 17 17 Si 1.86801 * 120.00270 * 184.44267 * 15 13 12 18 18 H 1.48498 * 109.46951 * 59.99818 * 17 15 13 19 19 H 1.48496 * 109.47104 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.46710 * 299.99941 * 17 15 13 21 21 C 1.38188 * 119.94056 * 185.95087 * 8 7 5 22 22 C 1.34771 * 111.64445 * 359.59466 * 7 5 4 23 23 O 1.21233 * 127.15271 * 180.26765 * 22 7 5 24 24 C 1.47308 * 126.69371 * 94.96167 * 4 3 2 25 25 H 1.08997 * 110.59999 * 298.56598 * 24 4 3 26 26 C 1.53004 * 110.72689 * 61.44616 * 24 4 3 27 27 C 1.53004 * 109.47071 * 54.35945 * 26 24 4 28 28 H 1.09008 * 109.47224 * 300.00404 * 1 2 3 29 29 H 1.09000 * 109.47198 * 59.99816 * 1 2 3 30 30 H 1.09001 * 109.47280 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47321 * 239.99769 * 2 1 3 32 32 H 1.09003 * 109.46987 * 119.99445 * 2 1 3 33 33 H 1.09001 * 109.47319 * 60.00428 * 3 2 1 34 34 H 1.08996 * 109.46891 * 299.99904 * 3 2 1 35 35 H 1.07998 * 119.78449 * 0.03243 * 9 8 7 36 36 H 1.08004 * 119.83771 * 179.97438 * 10 9 8 37 37 H 1.07999 * 120.06566 * 180.29563 * 11 10 9 38 38 H 0.96994 * 120.00062 * 180.02562 * 16 15 13 39 39 H 1.07994 * 120.16608 * 0.02562 * 21 8 7 40 40 H 1.08998 * 109.47172 * 174.36164 * 26 24 4 41 41 H 1.09002 * 109.47245 * 294.36519 * 26 24 4 42 42 H 1.08994 * 109.47389 * 304.98621 * 27 26 24 43 43 H 1.09005 * 109.46628 * 64.98704 * 27 26 24 44 44 H 1.09003 * 109.47077 * 184.97912 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5049 1.4426 0.0006 5 6 4.3083 1.3436 1.0752 6 8 3.9014 1.2394 2.2157 7 7 5.6053 1.3765 0.7484 8 6 6.6536 1.2944 1.6760 9 6 6.3766 1.0455 3.0177 10 6 7.4042 0.9618 3.9424 11 6 8.7125 1.1185 3.5436 12 6 9.0072 1.3760 2.1917 13 6 10.3481 1.5437 1.7751 14 1 10.6596 1.1907 0.8030 15 6 11.2699 2.1718 2.6199 16 7 10.9143 2.5261 3.8281 17 14 13.0083 2.5048 2.0226 18 1 12.9608 3.3837 0.8265 19 1 13.7814 3.1752 3.0986 20 1 13.6641 1.2206 1.6675 21 6 7.9599 1.4604 1.2569 22 6 5.7797 1.4924 -0.5829 23 8 6.8326 1.5434 -1.1817 24 6 4.3857 1.5446 -1.1758 25 1 4.2239 0.7036 -1.8500 26 6 4.1611 2.8696 -1.9071 27 6 4.3276 4.0297 -0.9235 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 1.6767 1.9564 0.8900 34 1 1.6766 1.9563 -0.8900 35 1 5.3537 0.9158 3.3392 36 1 7.1783 0.7687 4.9808 37 1 9.5110 1.0477 4.2673 38 1 11.5531 2.9618 4.4135 39 1 8.1757 1.6537 0.2165 40 1 4.8894 2.9683 -2.7120 41 1 3.1540 2.8885 -2.3239 42 1 3.6608 3.8841 -0.0737 43 1 5.3595 4.0642 -0.5739 44 1 4.0814 4.9671 -1.4222 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000414360086.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:20:28 Heat of formation + Delta-G solvation = -35.781775 kcal Electronic energy + Delta-G solvation = -27012.787432 eV Core-core repulsion = 23316.201665 eV Total energy + Delta-G solvation = -3696.585767 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.85129 -39.94008 -39.57540 -37.83081 -36.86827 -35.49198 -34.90475 -33.06981 -31.82995 -30.78389 -28.55781 -27.34907 -27.10882 -24.83214 -23.89879 -22.83979 -22.50454 -21.49733 -21.20716 -19.60425 -18.38903 -18.07969 -17.50882 -17.13640 -17.04602 -16.53344 -16.45255 -15.80702 -15.59200 -15.51893 -15.09815 -15.00534 -14.74992 -14.61711 -14.17248 -14.08971 -13.76865 -13.25550 -13.13301 -13.02420 -12.97368 -12.91479 -12.70340 -12.55224 -12.53373 -12.22648 -12.18286 -12.04690 -11.72803 -11.61407 -11.57912 -11.20665 -11.05821 -10.69052 -10.05837 -9.46208 -8.96561 -8.54877 -6.47636 0.43692 0.78687 0.87328 1.01182 1.36819 1.47664 1.50484 1.92176 2.04724 2.21720 2.75268 2.85912 3.49858 3.58268 3.77432 3.94342 4.08751 4.18363 4.23743 4.29827 4.36566 4.42779 4.46286 4.61803 4.68564 4.71996 4.76574 4.94065 4.95682 4.99813 5.01246 5.02424 5.15888 5.22092 5.24233 5.28077 5.34308 5.39615 5.53037 5.55052 5.71110 6.01962 6.03804 6.14975 6.27809 6.37741 6.60427 6.87908 6.90855 7.01264 8.38055 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.021402 B = 0.003654 C = 0.003296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.987385 B = 7661.411317 C = 8492.024331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.143 4.143 3 C 0.147 3.853 4 N -0.603 5.603 5 C 0.691 3.309 6 O -0.564 6.564 7 N -0.523 5.523 8 C 0.135 3.865 9 C -0.242 4.242 10 C -0.098 4.098 11 C -0.173 4.173 12 C 0.089 3.911 13 C -0.499 4.499 14 H 0.071 0.929 15 C 0.030 3.970 16 N -0.839 5.839 17 Si 0.991 3.009 18 H -0.264 1.264 19 H -0.265 1.265 20 H -0.258 1.258 21 C -0.242 4.242 22 C 0.506 3.494 23 O -0.487 6.487 24 C 0.106 3.894 25 H 0.166 0.834 26 C -0.109 4.109 27 C -0.161 4.161 28 H 0.053 0.947 29 H 0.078 0.922 30 H 0.058 0.942 31 H 0.077 0.923 32 H 0.036 0.964 33 H 0.077 0.923 34 H 0.133 0.867 35 H 0.138 0.862 36 H 0.122 0.878 37 H 0.119 0.881 38 H 0.287 0.713 39 H 0.118 0.882 40 H 0.098 0.902 41 H 0.132 0.868 42 H 0.051 0.949 43 H 0.014 0.986 44 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.763 0.021 -12.384 22.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.182 4.182 3 C 0.028 3.972 4 N -0.341 5.341 5 C 0.395 3.605 6 O -0.440 6.440 7 N -0.259 5.259 8 C 0.045 3.955 9 C -0.263 4.263 10 C -0.117 4.117 11 C -0.193 4.193 12 C 0.086 3.914 13 C -0.529 4.529 14 H 0.090 0.910 15 C -0.183 4.183 16 N -0.466 5.466 17 Si 0.811 3.189 18 H -0.189 1.189 19 H -0.189 1.189 20 H -0.182 1.182 21 C -0.263 4.263 22 C 0.296 3.704 23 O -0.358 6.358 24 C 0.000 4.000 25 H 0.183 0.817 26 C -0.147 4.147 27 C -0.219 4.219 28 H 0.072 0.928 29 H 0.097 0.903 30 H 0.077 0.923 31 H 0.096 0.904 32 H 0.055 0.945 33 H 0.096 0.904 34 H 0.151 0.849 35 H 0.155 0.845 36 H 0.140 0.860 37 H 0.136 0.864 38 H 0.097 0.903 39 H 0.136 0.864 40 H 0.116 0.884 41 H 0.150 0.850 42 H 0.070 0.930 43 H 0.033 0.967 44 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -18.474 0.114 -11.887 21.968 hybrid contribution 1.311 0.077 0.552 1.424 sum -17.163 0.191 -11.335 20.569 Atomic orbital electron populations 1.21649 0.93010 1.02554 1.02887 1.21946 0.97743 0.96386 1.02082 1.21786 0.71856 0.98123 1.05456 1.47934 1.06987 1.75017 1.04124 1.16090 0.80348 0.78118 0.85983 1.90791 1.77074 1.55793 1.20345 1.43992 1.07284 1.65057 1.09563 1.17648 0.85649 1.03335 0.88895 1.21169 1.00566 1.13255 0.91281 1.20949 0.92569 0.99644 0.98561 1.21659 0.95723 1.04661 0.97263 1.17828 0.93206 0.88461 0.91892 1.19682 0.94162 1.36325 1.02774 0.91039 1.26772 1.04577 0.92893 0.94009 1.69816 1.37797 1.31550 1.07453 0.85126 0.75438 0.79527 0.78798 1.18867 1.18868 1.18169 1.21441 0.90454 1.13485 1.00928 1.21883 0.93224 0.74035 0.81235 1.90712 1.32335 1.46399 1.66356 1.22476 0.82812 1.05202 0.89512 0.81708 1.21794 1.06679 0.88582 0.97613 1.21854 0.99767 1.00263 1.00008 0.92805 0.90260 0.92252 0.90396 0.94489 0.90449 0.84872 0.84480 0.86003 0.86363 0.90254 0.86383 0.88381 0.84961 0.93027 0.96696 0.89338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.39 9.91 71.98 0.71 -0.67 16 2 C -0.14 -2.02 6.26 30.59 0.19 -1.83 16 3 C 0.15 2.11 5.98 86.38 0.52 2.63 16 4 N -0.60 -13.76 1.76 -817.78 -1.44 -15.20 16 5 C 0.69 24.72 8.08 179.44 1.45 26.17 16 6 O -0.56 -23.54 14.38 -3.82 -0.05 -23.60 16 7 N -0.52 -21.42 2.83 -594.92 -1.68 -23.11 16 8 C 0.14 6.82 6.55 38.03 0.25 7.07 16 9 C -0.24 -12.22 9.27 22.57 0.21 -12.01 16 10 C -0.10 -5.01 10.02 22.20 0.22 -4.79 16 11 C -0.17 -9.74 8.67 22.75 0.20 -9.54 16 12 C 0.09 5.20 5.54 -21.30 -0.12 5.09 16 13 C -0.50 -28.81 9.04 23.46 0.21 -28.60 16 14 H 0.07 4.03 7.85 -2.91 -0.02 4.01 16 15 C 0.03 1.59 5.42 85.25 0.46 2.05 16 16 N -0.84 -45.82 10.63 21.82 0.23 -45.58 16 17 Si 0.99 40.45 29.56 68.60 2.03 42.48 16 18 H -0.26 -10.62 7.11 99.48 0.71 -9.92 16 19 H -0.26 -10.08 7.11 99.48 0.71 -9.37 16 20 H -0.26 -10.12 7.11 99.48 0.71 -9.41 16 21 C -0.24 -13.38 9.06 22.84 0.21 -13.17 16 22 C 0.51 17.73 6.42 87.94 0.56 18.29 16 23 O -0.49 -20.14 15.06 -2.88 -0.04 -20.18 16 24 C 0.11 2.16 3.78 44.37 0.17 2.32 16 25 H 0.17 2.13 8.14 -2.39 -0.02 2.11 16 26 C -0.11 -1.55 5.77 30.60 0.18 -1.37 16 27 C -0.16 -3.32 9.39 71.98 0.68 -2.64 16 28 H 0.05 0.58 8.14 -2.38 -0.02 0.56 16 29 H 0.08 0.43 8.14 -2.39 -0.02 0.41 16 30 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.08 1.32 8.12 -2.39 -0.02 1.30 16 34 H 0.13 0.74 7.54 -2.39 -0.02 0.73 16 35 H 0.14 6.74 5.15 -2.91 -0.01 6.73 16 36 H 0.12 5.42 8.06 -2.91 -0.02 5.40 16 37 H 0.12 6.84 6.17 -2.91 -0.02 6.82 16 38 H 0.29 14.18 8.30 -92.71 -0.77 13.41 16 39 H 0.12 6.60 5.35 -2.91 -0.02 6.58 16 40 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 41 H 0.13 0.69 7.65 -2.39 -0.02 0.68 16 42 H 0.05 1.13 7.30 -2.39 -0.02 1.12 16 43 H 0.01 0.41 7.46 -2.38 -0.02 0.39 16 44 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 Total: -1.00 -75.90 358.76 6.14 -69.76 By element: Atomic # 1 Polarization: 25.45 SS G_CDS: 1.01 Total: 26.46 kcal Atomic # 6 Polarization: -17.12 SS G_CDS: 6.10 Total: -11.02 kcal Atomic # 7 Polarization: -81.00 SS G_CDS: -2.89 Total: -83.89 kcal Atomic # 8 Polarization: -43.68 SS G_CDS: -0.10 Total: -43.78 kcal Atomic # 14 Polarization: 40.45 SS G_CDS: 2.03 Total: 42.48 kcal Total: -75.90 6.14 -69.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414360086.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.975 kcal (2) G-P(sol) polarization free energy of solvation -75.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds