Wall clock time and date at job start Tue Mar 31 2020 11:16:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.47266 * 2 1 4 4 H 1.09003 * 109.46818 * 303.60732 * 3 2 1 5 5 C 1.50699 * 109.47237 * 183.60891 * 3 2 1 6 6 O 1.21274 * 120.00274 * 257.86725 * 5 3 2 7 7 N 1.34784 * 119.99980 * 77.86656 * 5 3 2 8 8 C 1.37140 * 119.99691 * 5.31506 * 7 5 3 9 9 H 1.08000 * 120.00299 * 25.22267 * 8 7 5 10 10 C 1.38891 * 119.99952 * 205.48659 * 8 7 5 11 11 N 1.31420 * 119.99817 * 10.86679 * 10 8 7 12 12 Si 1.86801 * 120.00116 * 190.86492 * 10 8 7 13 13 H 1.48497 * 109.47110 * 359.97438 * 12 10 8 14 14 H 1.48494 * 109.47241 * 120.00491 * 12 10 8 15 15 H 1.48503 * 109.46954 * 240.00334 * 12 10 8 16 16 C 1.39790 * 120.00079 * 185.32305 * 7 5 3 17 17 C 1.38956 * 120.07497 * 247.52552 * 16 7 5 18 18 C 1.38086 * 119.92188 * 179.80857 * 17 16 7 19 19 C 1.38305 * 120.07628 * 0.44815 * 18 17 16 20 20 C 1.38313 * 120.15616 * 359.78066 * 19 18 17 21 21 C 1.38083 * 120.07570 * 0.02562 * 20 19 18 22 22 N 1.46496 * 109.46916 * 63.60862 * 3 2 1 23 23 C 1.46767 * 124.34937 * 239.99868 * 22 3 2 24 24 C 1.54475 * 105.47153 * 197.02066 * 23 22 3 25 25 C 1.54628 * 101.76591 * 334.58213 * 24 23 22 26 26 C 1.34416 * 124.34959 * 59.70179 * 22 3 2 27 27 O 1.21285 * 124.94260 * 359.57163 * 26 22 3 28 28 H 1.08995 * 109.47586 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.46927 * 300.00150 * 1 2 3 30 30 H 1.08997 * 109.47581 * 59.99418 * 1 2 3 31 31 H 1.09002 * 109.46998 * 240.00349 * 2 1 3 32 32 H 1.08997 * 109.47581 * 120.00582 * 2 1 3 33 33 H 0.97005 * 120.00336 * 184.97003 * 11 10 8 34 34 H 1.07999 * 120.04149 * 0.02562 * 17 16 7 35 35 H 1.07994 * 119.96195 * 180.20927 * 18 17 16 36 36 H 1.07995 * 119.92455 * 179.76824 * 19 18 17 37 37 H 1.07999 * 119.95655 * 179.97438 * 20 19 18 38 38 H 1.08003 * 120.03496 * 179.97438 * 21 20 19 39 39 H 1.09000 * 110.24217 * 316.01976 * 23 22 3 40 40 H 1.08995 * 110.24186 * 78.01594 * 23 22 3 41 41 H 1.09001 * 110.97283 * 92.70462 * 24 23 22 42 42 H 1.09008 * 110.96721 * 216.46669 * 24 23 22 43 43 H 1.09003 * 110.48684 * 143.47737 * 25 24 23 44 44 H 1.08999 * 110.48900 * 265.98734 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6248 1.9746 -0.8559 5 6 3.5443 1.4434 -0.0894 6 8 4.2108 1.6430 0.9040 7 7 4.1492 1.2225 -1.2735 8 6 3.3988 1.1054 -2.4154 9 1 2.4259 1.5709 -2.4725 10 6 3.8877 0.3835 -3.4966 11 7 4.9615 -0.3613 -3.3579 12 14 3.0188 0.4713 -5.1479 13 1 1.8432 1.3723 -5.0414 14 1 3.9555 0.9979 -6.1728 15 1 2.5666 -0.8872 -5.5421 16 6 5.5413 1.1126 -1.3375 17 6 6.2876 2.0878 -1.9877 18 6 7.6629 1.9781 -2.0456 19 6 8.2968 0.8945 -1.4655 20 6 7.5567 -0.0806 -0.8216 21 6 6.1815 0.0248 -0.7564 22 7 1.6239 2.1075 1.2372 23 6 0.7776 3.3054 1.2893 24 6 0.9666 3.8822 2.7098 25 6 1.3726 2.6228 3.5100 26 6 1.9636 1.6957 2.4709 27 8 2.6467 0.7237 2.7152 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 5.3449 -0.8080 -4.1289 34 1 5.7930 2.9324 -2.4442 35 1 8.2439 2.7374 -2.5479 36 1 9.3723 0.8092 -1.5155 37 1 8.0550 -0.9256 -0.3700 38 1 5.6041 -0.7372 -0.2538 39 1 1.1023 4.0294 0.5419 40 1 -0.2663 3.0370 1.1269 41 1 1.7618 4.6275 2.7256 42 1 0.0340 4.3009 3.0881 43 1 2.1153 2.8748 4.2670 44 1 0.4976 2.1662 3.9725 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000415073597.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:16:01 Heat of formation + Delta-G solvation = -26.687861 kcal Electronic energy + Delta-G solvation = -27927.733200 eV Core-core repulsion = 24231.541775 eV Total energy + Delta-G solvation = -3696.191425 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.31113 -39.04857 -37.17998 -35.81560 -34.70653 -34.22913 -31.66674 -30.61043 -29.83722 -29.04695 -27.27836 -26.47240 -24.93756 -22.11717 -21.63950 -21.58819 -21.36764 -19.62897 -18.59838 -17.58639 -16.45891 -16.41679 -15.88230 -15.44845 -14.75410 -14.65849 -14.38883 -14.09730 -13.99182 -13.52949 -13.30779 -13.24106 -12.91789 -12.81170 -12.64576 -12.39315 -12.25924 -12.07742 -11.57800 -11.55416 -11.37855 -11.28803 -11.16434 -10.94231 -10.87239 -10.68901 -10.56548 -10.47060 -10.29124 -10.18432 -9.36603 -9.09111 -8.79595 -8.19235 -7.97574 -7.81658 -7.40953 -6.24506 -4.11355 2.49710 2.54817 3.06347 3.13973 3.18004 3.19164 3.43902 3.77173 4.04000 4.56290 4.63702 4.73000 4.85272 4.91840 5.11822 5.26077 5.47527 5.55917 5.60544 5.65191 5.68010 5.77935 5.82749 5.83068 5.93101 5.94092 6.04196 6.07466 6.16441 6.21003 6.39519 6.47669 6.52194 6.60826 6.82958 6.84599 7.06311 7.09660 7.28905 7.38492 7.50093 7.65917 7.71048 7.80831 8.01873 8.43368 8.80727 9.00284 9.36167 9.80213 10.61801 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.012775 B = 0.005844 C = 0.004611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2191.312497 B = 4789.903929 C = 6070.643239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.128 4.128 3 C 0.164 3.836 4 H 0.103 0.897 5 C 0.464 3.536 6 O -0.562 6.562 7 N -0.414 5.414 8 C -0.353 4.353 9 H 0.097 0.903 10 C 0.048 3.952 11 N -0.845 5.845 12 Si 0.915 3.085 13 H -0.268 1.268 14 H -0.280 1.280 15 H -0.280 1.280 16 C 0.241 3.759 17 C -0.125 4.125 18 C -0.122 4.122 19 C -0.151 4.151 20 C -0.119 4.119 21 C -0.078 4.078 22 N -0.607 5.607 23 C 0.105 3.895 24 C -0.130 4.130 25 C -0.155 4.155 26 C 0.522 3.478 27 O -0.508 6.508 28 H 0.051 0.949 29 H 0.046 0.954 30 H 0.052 0.948 31 H 0.092 0.908 32 H 0.074 0.926 33 H 0.271 0.729 34 H 0.107 0.893 35 H 0.105 0.895 36 H 0.103 0.897 37 H 0.105 0.895 38 H 0.104 0.896 39 H 0.074 0.926 40 H 0.067 0.933 41 H 0.079 0.921 42 H 0.084 0.916 43 H 0.095 0.905 44 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.626 5.972 4.268 10.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.167 4.167 3 C 0.058 3.942 4 H 0.120 0.880 5 C 0.251 3.749 6 O -0.444 6.444 7 N -0.131 5.131 8 C -0.479 4.479 9 H 0.115 0.885 10 C -0.160 4.160 11 N -0.480 5.480 12 Si 0.741 3.259 13 H -0.193 1.193 14 H -0.205 1.205 15 H -0.206 1.206 16 C 0.150 3.850 17 C -0.145 4.145 18 C -0.140 4.140 19 C -0.170 4.170 20 C -0.137 4.137 21 C -0.098 4.098 22 N -0.343 5.343 23 C -0.019 4.019 24 C -0.168 4.168 25 C -0.196 4.196 26 C 0.309 3.691 27 O -0.381 6.381 28 H 0.070 0.930 29 H 0.066 0.934 30 H 0.071 0.929 31 H 0.111 0.889 32 H 0.092 0.908 33 H 0.082 0.918 34 H 0.125 0.875 35 H 0.123 0.877 36 H 0.122 0.878 37 H 0.124 0.876 38 H 0.122 0.878 39 H 0.092 0.908 40 H 0.085 0.915 41 H 0.098 0.902 42 H 0.103 0.897 43 H 0.114 0.886 44 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -6.831 5.319 4.729 9.864 hybrid contribution -0.372 0.011 -1.342 1.392 sum -7.203 5.329 3.387 9.579 Atomic orbital electron populations 1.21683 0.95917 1.01137 1.01020 1.21714 0.95411 0.95004 1.04573 1.20659 0.93197 0.94849 0.85460 0.87951 1.20478 0.89744 0.81859 0.82776 1.90633 1.65754 1.52610 1.35360 1.41231 1.02695 1.62857 1.06329 1.19493 1.03104 1.33342 0.91944 0.88514 1.25287 0.96857 0.93856 1.00021 1.69918 1.20848 1.26560 1.30661 0.86063 0.79402 0.78216 0.82204 1.19251 1.20530 1.20601 1.17188 0.83165 0.91788 0.92897 1.20910 0.93393 0.98801 1.01378 1.20657 0.94115 0.98191 1.01083 1.20713 0.98331 0.96084 1.01862 1.20695 0.93796 0.98616 1.00640 1.20798 0.93843 0.96007 0.99160 1.48034 1.51181 1.29027 1.06024 1.22011 0.94627 0.87236 0.98000 1.22552 1.02594 0.97248 0.94378 1.22310 1.02573 0.96222 0.98474 1.20544 0.79441 0.85310 0.83821 1.90700 1.36544 1.28150 1.82735 0.92977 0.93446 0.92883 0.88938 0.90753 0.91791 0.87451 0.87703 0.87841 0.87640 0.87774 0.90778 0.91461 0.90203 0.89704 0.88613 0.88630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.04 9.79 37.15 0.36 -1.68 16 2 C -0.13 -2.42 5.26 -26.73 -0.14 -2.56 16 3 C 0.16 3.20 1.97 -69.08 -0.14 3.07 16 4 H 0.10 1.85 6.44 -51.93 -0.33 1.52 16 5 C 0.46 11.27 6.64 -10.98 -0.07 11.19 16 6 O -0.56 -15.40 13.96 -15.28 -0.21 -15.62 16 7 N -0.41 -10.32 2.68 -58.98 -0.16 -10.48 16 8 C -0.35 -8.46 8.01 -14.94 -0.12 -8.58 16 9 H 0.10 2.15 6.20 -52.49 -0.33 1.82 16 10 C 0.05 1.16 5.22 -17.49 -0.09 1.07 16 11 N -0.85 -21.80 10.85 55.49 0.60 -21.19 16 12 Si 0.91 18.83 29.57 -169.99 -5.03 13.80 16 13 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 14 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 15 H -0.28 -5.84 7.11 56.52 0.40 -5.43 16 16 C 0.24 6.09 2.55 -83.70 -0.21 5.88 16 17 C -0.12 -2.93 9.66 -39.37 -0.38 -3.31 16 18 C -0.12 -2.52 10.04 -39.61 -0.40 -2.92 16 19 C -0.15 -3.05 10.04 -39.53 -0.40 -3.44 16 20 C -0.12 -2.57 10.04 -39.61 -0.40 -2.97 16 21 C -0.08 -1.95 8.79 -39.37 -0.35 -2.30 16 22 N -0.61 -10.42 2.13 -166.16 -0.35 -10.78 16 23 C 0.10 1.25 7.30 -3.12 -0.02 1.23 16 24 C -0.13 -1.31 7.18 -25.10 -0.18 -1.49 16 25 C -0.16 -1.98 6.86 -26.74 -0.18 -2.16 16 26 C 0.52 9.77 6.72 -10.86 -0.07 9.70 16 27 O -0.51 -11.99 14.79 -15.29 -0.23 -12.22 16 28 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.05 0.65 7.71 -51.93 -0.40 0.25 16 30 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.09 1.89 7.33 -51.93 -0.38 1.51 16 32 H 0.07 1.59 6.64 -51.93 -0.34 1.24 16 33 H 0.27 6.75 8.32 -40.82 -0.34 6.41 16 34 H 0.11 2.44 8.06 -52.49 -0.42 2.02 16 35 H 0.10 1.83 8.06 -52.49 -0.42 1.41 16 36 H 0.10 1.73 8.06 -52.49 -0.42 1.31 16 37 H 0.11 1.99 8.06 -52.49 -0.42 1.57 16 38 H 0.10 2.71 8.06 -52.48 -0.42 2.29 16 39 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 41 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.08 0.59 8.14 -51.92 -0.42 0.17 16 43 H 0.10 1.20 8.14 -51.93 -0.42 0.77 16 44 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 359.43 15.07 5.42 5.42 Total: -1.00 -32.45 359.43 -9.17 -41.61 By element: Atomic # 1 Polarization: 15.14 SS G_CDS: -6.42 Total: 8.73 kcal Atomic # 6 Polarization: 3.52 SS G_CDS: -2.79 Total: 0.73 kcal Atomic # 7 Polarization: -42.54 SS G_CDS: 0.09 Total: -42.45 kcal Atomic # 8 Polarization: -27.39 SS G_CDS: -0.44 Total: -27.83 kcal Atomic # 14 Polarization: 18.83 SS G_CDS: -5.03 Total: 13.80 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -32.45 -9.17 -41.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000415073597.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.926 kcal (2) G-P(sol) polarization free energy of solvation -32.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds