Wall clock time and date at job start Tue Mar 31 2020 11:16:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.47266 * 2 1 4 4 H 1.09003 * 109.46818 * 303.60732 * 3 2 1 5 5 C 1.50699 * 109.47237 * 183.60891 * 3 2 1 6 6 O 1.21274 * 120.00274 * 257.86725 * 5 3 2 7 7 N 1.34784 * 119.99980 * 77.86656 * 5 3 2 8 8 C 1.37140 * 119.99691 * 5.31506 * 7 5 3 9 9 H 1.08000 * 120.00299 * 25.22267 * 8 7 5 10 10 C 1.38891 * 119.99952 * 205.48659 * 8 7 5 11 11 N 1.31420 * 119.99817 * 10.86679 * 10 8 7 12 12 Si 1.86801 * 120.00116 * 190.86492 * 10 8 7 13 13 H 1.48497 * 109.47110 * 359.97438 * 12 10 8 14 14 H 1.48494 * 109.47241 * 120.00491 * 12 10 8 15 15 H 1.48503 * 109.46954 * 240.00334 * 12 10 8 16 16 C 1.39790 * 120.00079 * 185.32305 * 7 5 3 17 17 C 1.38956 * 120.07497 * 247.52552 * 16 7 5 18 18 C 1.38086 * 119.92188 * 179.80857 * 17 16 7 19 19 C 1.38305 * 120.07628 * 0.44815 * 18 17 16 20 20 C 1.38313 * 120.15616 * 359.78066 * 19 18 17 21 21 C 1.38083 * 120.07570 * 0.02562 * 20 19 18 22 22 N 1.46496 * 109.46916 * 63.60862 * 3 2 1 23 23 C 1.46767 * 124.34937 * 239.99868 * 22 3 2 24 24 C 1.54475 * 105.47153 * 197.02066 * 23 22 3 25 25 C 1.54628 * 101.76591 * 334.58213 * 24 23 22 26 26 C 1.34416 * 124.34959 * 59.70179 * 22 3 2 27 27 O 1.21285 * 124.94260 * 359.57163 * 26 22 3 28 28 H 1.08995 * 109.47586 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.46927 * 300.00150 * 1 2 3 30 30 H 1.08997 * 109.47581 * 59.99418 * 1 2 3 31 31 H 1.09002 * 109.46998 * 240.00349 * 2 1 3 32 32 H 1.08997 * 109.47581 * 120.00582 * 2 1 3 33 33 H 0.97005 * 120.00336 * 184.97003 * 11 10 8 34 34 H 1.07999 * 120.04149 * 0.02562 * 17 16 7 35 35 H 1.07994 * 119.96195 * 180.20927 * 18 17 16 36 36 H 1.07995 * 119.92455 * 179.76824 * 19 18 17 37 37 H 1.07999 * 119.95655 * 179.97438 * 20 19 18 38 38 H 1.08003 * 120.03496 * 179.97438 * 21 20 19 39 39 H 1.09000 * 110.24217 * 316.01976 * 23 22 3 40 40 H 1.08995 * 110.24186 * 78.01594 * 23 22 3 41 41 H 1.09001 * 110.97283 * 92.70462 * 24 23 22 42 42 H 1.09008 * 110.96721 * 216.46669 * 24 23 22 43 43 H 1.09003 * 110.48684 * 143.47737 * 25 24 23 44 44 H 1.08999 * 110.48900 * 265.98734 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6248 1.9746 -0.8559 5 6 3.5443 1.4434 -0.0894 6 8 4.2108 1.6430 0.9040 7 7 4.1492 1.2225 -1.2735 8 6 3.3988 1.1054 -2.4154 9 1 2.4259 1.5709 -2.4725 10 6 3.8877 0.3835 -3.4966 11 7 4.9615 -0.3613 -3.3579 12 14 3.0188 0.4713 -5.1479 13 1 1.8432 1.3723 -5.0414 14 1 3.9555 0.9979 -6.1728 15 1 2.5666 -0.8872 -5.5421 16 6 5.5413 1.1126 -1.3375 17 6 6.2876 2.0878 -1.9877 18 6 7.6629 1.9781 -2.0456 19 6 8.2968 0.8945 -1.4655 20 6 7.5567 -0.0806 -0.8216 21 6 6.1815 0.0248 -0.7564 22 7 1.6239 2.1075 1.2372 23 6 0.7776 3.3054 1.2893 24 6 0.9666 3.8822 2.7098 25 6 1.3726 2.6228 3.5100 26 6 1.9636 1.6957 2.4709 27 8 2.6467 0.7237 2.7152 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 5.3449 -0.8080 -4.1289 34 1 5.7930 2.9324 -2.4442 35 1 8.2439 2.7374 -2.5479 36 1 9.3723 0.8092 -1.5155 37 1 8.0550 -0.9256 -0.3700 38 1 5.6041 -0.7372 -0.2538 39 1 1.1023 4.0294 0.5419 40 1 -0.2663 3.0370 1.1269 41 1 1.7618 4.6275 2.7256 42 1 0.0340 4.3009 3.0881 43 1 2.1153 2.8748 4.2670 44 1 0.4976 2.1662 3.9725 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000415073597.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:16:00 Heat of formation + Delta-G solvation = -44.419165 kcal Electronic energy + Delta-G solvation = -27928.502088 eV Core-core repulsion = 24231.541775 eV Total energy + Delta-G solvation = -3696.960312 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.80812 -40.69569 -38.91942 -37.24690 -36.57899 -35.63409 -33.54575 -31.82120 -31.59891 -30.77218 -28.36783 -27.93806 -26.80014 -23.72622 -23.29184 -22.94195 -22.62117 -21.35462 -20.25623 -19.20310 -18.16529 -17.62474 -17.31275 -17.15585 -16.52184 -16.28839 -16.13131 -15.62230 -15.36421 -15.10922 -14.83460 -14.62947 -14.48002 -14.21347 -14.13913 -13.79129 -13.65269 -13.34346 -13.27603 -13.20441 -12.91685 -12.77995 -12.65599 -12.36274 -12.23505 -12.11177 -11.97160 -11.96135 -11.89509 -11.75224 -11.19702 -10.64477 -10.41858 -10.04676 -9.60100 -9.47953 -9.22653 -8.08842 -6.02272 0.73361 0.77647 1.41504 1.47406 1.59211 1.75004 1.94452 2.14413 2.33030 2.93053 3.05382 3.30326 3.56414 3.71522 4.03169 4.06606 4.11125 4.14898 4.20344 4.24590 4.31820 4.36346 4.46773 4.58879 4.71209 4.73177 4.74949 4.85319 4.89008 4.91211 5.07976 5.10979 5.12893 5.14308 5.27960 5.31090 5.37024 5.41292 5.64059 5.72133 5.74994 5.84995 6.00399 6.23949 6.41013 6.58124 7.11148 7.41010 7.52653 7.94722 8.77194 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.012775 B = 0.005844 C = 0.004611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2191.312497 B = 4789.903929 C = 6070.643239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.119 4.119 3 C 0.171 3.829 4 H 0.120 0.880 5 C 0.446 3.554 6 O -0.605 6.605 7 N -0.422 5.422 8 C -0.361 4.361 9 H 0.114 0.886 10 C 0.005 3.995 11 N -0.877 5.877 12 Si 0.983 3.017 13 H -0.247 1.247 14 H -0.284 1.284 15 H -0.284 1.284 16 C 0.216 3.784 17 C -0.147 4.147 18 C -0.115 4.115 19 C -0.145 4.145 20 C -0.122 4.122 21 C -0.112 4.112 22 N -0.610 5.610 23 C 0.094 3.906 24 C -0.115 4.115 25 C -0.146 4.146 26 C 0.500 3.500 27 O -0.575 6.575 28 H 0.061 0.939 29 H 0.059 0.941 30 H 0.073 0.927 31 H 0.066 0.934 32 H 0.037 0.963 33 H 0.267 0.733 34 H 0.106 0.894 35 H 0.144 0.856 36 H 0.148 0.852 37 H 0.130 0.870 38 H 0.069 0.931 39 H 0.079 0.921 40 H 0.102 0.898 41 H 0.075 0.925 42 H 0.131 0.869 43 H 0.094 0.906 44 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.325 8.202 3.368 12.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.158 4.158 3 C 0.064 3.936 4 H 0.138 0.862 5 C 0.236 3.764 6 O -0.490 6.490 7 N -0.139 5.139 8 C -0.487 4.487 9 H 0.131 0.869 10 C -0.200 4.200 11 N -0.513 5.513 12 Si 0.806 3.194 13 H -0.170 1.170 14 H -0.210 1.210 15 H -0.211 1.211 16 C 0.124 3.876 17 C -0.167 4.167 18 C -0.134 4.134 19 C -0.163 4.163 20 C -0.140 4.140 21 C -0.131 4.131 22 N -0.344 5.344 23 C -0.027 4.027 24 C -0.152 4.152 25 C -0.186 4.186 26 C 0.289 3.711 27 O -0.453 6.453 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.092 0.908 31 H 0.085 0.915 32 H 0.056 0.944 33 H 0.077 0.923 34 H 0.124 0.876 35 H 0.162 0.838 36 H 0.166 0.834 37 H 0.147 0.853 38 H 0.087 0.913 39 H 0.098 0.902 40 H 0.120 0.880 41 H 0.094 0.906 42 H 0.149 0.851 43 H 0.113 0.887 44 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -8.578 7.600 3.817 12.079 hybrid contribution 0.260 -0.706 -1.033 1.277 sum -8.318 6.895 2.784 11.157 Atomic orbital electron populations 1.21604 0.91900 1.02396 1.02592 1.21579 0.98710 0.94096 1.01445 1.20515 0.89843 0.95714 0.87509 0.86190 1.21427 0.91911 0.81012 0.82037 1.90581 1.67246 1.54559 1.36566 1.41530 1.03083 1.62359 1.06928 1.19918 1.03702 1.33338 0.91704 0.86867 1.26152 0.97393 0.93240 1.03216 1.70097 1.22505 1.27513 1.31168 0.85025 0.78789 0.78102 0.77455 1.17032 1.20965 1.21059 1.17510 0.83770 0.92538 0.93754 1.21086 0.94889 0.98669 1.02048 1.21132 0.93222 0.99026 1.00000 1.21180 1.00425 0.94737 0.99999 1.21049 0.92636 0.99962 1.00376 1.20750 0.95380 0.96016 1.00986 1.48251 1.51154 1.30214 1.04743 1.22459 0.95364 0.85366 0.99561 1.22618 1.04666 0.95585 0.92379 1.22339 1.03184 0.96159 0.96935 1.21732 0.78621 0.85191 0.85548 1.90656 1.39553 1.31204 1.83934 0.91994 0.92195 0.90760 0.91544 0.94420 0.92281 0.87553 0.83804 0.83380 0.85255 0.91289 0.90225 0.88016 0.90645 0.85073 0.88741 0.85695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.54 9.79 71.98 0.70 -2.84 16 2 C -0.12 -4.69 5.26 30.59 0.16 -4.53 16 3 C 0.17 6.83 1.97 44.25 0.09 6.91 16 4 H 0.12 4.27 6.44 -2.39 -0.02 4.25 16 5 C 0.45 22.97 6.64 87.66 0.58 23.55 16 6 O -0.61 -35.52 13.96 16.92 0.24 -35.28 16 7 N -0.42 -22.14 2.68 -458.90 -1.23 -23.37 16 8 C -0.36 -17.71 8.01 84.02 0.67 -17.04 16 9 H 0.11 4.99 6.20 -2.91 -0.02 4.98 16 10 C 0.00 0.23 5.22 84.91 0.44 0.67 16 11 N -0.88 -46.78 10.85 21.65 0.23 -46.55 16 12 Si 0.98 38.48 29.57 68.60 2.03 40.50 16 13 H -0.25 -8.76 7.11 99.48 0.71 -8.05 16 14 H -0.28 -11.24 7.11 99.48 0.71 -10.53 16 15 H -0.28 -11.26 7.11 99.48 0.71 -10.56 16 16 C 0.22 11.43 2.55 38.22 0.10 11.53 16 17 C -0.15 -7.02 9.66 22.41 0.22 -6.81 16 18 C -0.12 -4.63 10.04 22.25 0.22 -4.40 16 19 C -0.15 -5.60 10.04 22.30 0.22 -5.38 16 20 C -0.12 -5.36 10.04 22.25 0.22 -5.13 16 21 C -0.11 -5.91 8.79 22.40 0.20 -5.71 16 22 N -0.61 -20.75 2.13 -798.21 -1.70 -22.45 16 23 C 0.09 1.96 7.30 86.83 0.63 2.59 16 24 C -0.11 -1.90 7.18 31.65 0.23 -1.67 16 25 C -0.15 -3.47 6.86 30.59 0.21 -3.26 16 26 C 0.50 19.12 6.72 87.90 0.59 19.71 16 27 O -0.57 -29.09 14.79 16.88 0.25 -28.84 16 28 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 29 H 0.06 1.51 7.71 -2.38 -0.02 1.50 16 30 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 31 H 0.07 2.89 7.33 -2.39 -0.02 2.88 16 32 H 0.04 1.73 6.64 -2.39 -0.02 1.72 16 33 H 0.27 13.72 8.32 -92.70 -0.77 12.95 16 34 H 0.11 4.94 8.06 -2.91 -0.02 4.91 16 35 H 0.14 4.57 8.06 -2.91 -0.02 4.55 16 36 H 0.15 4.38 8.06 -2.91 -0.02 4.35 16 37 H 0.13 4.90 8.06 -2.91 -0.02 4.87 16 38 H 0.07 3.99 8.06 -2.91 -0.02 3.97 16 39 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 40 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 41 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 42 H 0.13 1.05 8.14 -2.38 -0.02 1.03 16 43 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 44 H 0.13 2.23 8.14 -2.39 -0.02 2.21 16 Total: -1.00 -79.13 359.43 6.30 -72.83 By element: Atomic # 1 Polarization: 33.98 SS G_CDS: 0.99 Total: 34.97 kcal Atomic # 6 Polarization: 2.70 SS G_CDS: 5.49 Total: 8.19 kcal Atomic # 7 Polarization: -89.67 SS G_CDS: -2.70 Total: -92.37 kcal Atomic # 8 Polarization: -64.61 SS G_CDS: 0.49 Total: -64.13 kcal Atomic # 14 Polarization: 38.48 SS G_CDS: 2.03 Total: 40.50 kcal Total: -79.13 6.30 -72.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000415073597.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.411 kcal (2) G-P(sol) polarization free energy of solvation -79.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds