Wall clock time and date at job start Tue Mar 31 2020 11:15:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53003 * 109.47373 * 2 1 4 4 H 1.09000 * 109.46688 * 55.00196 * 3 2 1 5 5 C 1.50693 * 109.46942 * 175.00328 * 3 2 1 6 6 O 1.21285 * 120.00108 * 120.00730 * 5 3 2 7 7 N 1.34780 * 120.00313 * 299.99800 * 5 3 2 8 8 C 1.39120 * 119.99927 * 184.44800 * 7 5 3 9 9 C 1.38641 * 120.28847 * 331.66519 * 8 7 5 10 10 C 1.38224 * 120.03747 * 180.30103 * 9 8 7 11 11 C 1.38868 * 120.61382 * 359.44670 * 10 9 8 12 12 C 1.36469 * 120.57429 * 0.55896 * 11 10 9 13 13 C 1.40738 * 119.94273 * 359.72223 * 12 11 10 14 14 C 1.41073 * 120.29545 * 180.02562 * 13 12 11 15 15 H 1.08002 * 119.99280 * 151.88129 * 14 13 12 16 16 C 1.39952 * 120.00390 * 331.87713 * 14 13 12 17 17 N 1.30857 * 120.00139 * 347.87318 * 16 14 13 18 18 Si 1.86799 * 120.00167 * 167.86744 * 16 14 13 19 19 H 1.48498 * 109.47023 * 0.02562 * 18 16 14 20 20 H 1.48498 * 109.47358 * 120.00178 * 18 16 14 21 21 H 1.48504 * 109.47332 * 240.00480 * 18 16 14 22 22 N 1.46499 * 109.47173 * 295.00638 * 3 2 1 23 23 C 1.46758 * 124.35462 * 119.72289 * 22 3 2 24 24 C 1.54658 * 105.38811 * 162.85172 * 23 22 3 25 25 C 1.54629 * 101.68046 * 25.76585 * 24 23 22 26 26 C 1.34424 * 124.34829 * 300.01939 * 22 3 2 27 27 O 1.21283 * 124.94132 * 0.39523 * 26 22 3 28 28 H 1.09001 * 109.46612 * 299.99501 * 1 2 3 29 29 H 1.09000 * 109.47223 * 59.99536 * 1 2 3 30 30 H 1.08999 * 109.47034 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46612 * 240.00499 * 2 1 3 32 32 H 1.09000 * 109.47223 * 120.00464 * 2 1 3 33 33 H 0.96998 * 119.99290 * 4.44907 * 7 5 3 34 34 H 1.07998 * 119.98136 * 0.02911 * 9 8 7 35 35 H 1.07996 * 119.69420 * 179.70881 * 10 9 8 36 36 H 1.08000 * 119.71459 * 180.30894 * 11 10 9 37 37 H 1.08003 * 120.02314 * 179.74590 * 12 11 10 38 38 H 0.96999 * 120.00283 * 179.97438 * 17 16 14 39 39 H 1.09006 * 110.24693 * 281.98489 * 23 22 3 40 40 H 1.09008 * 110.24459 * 43.97792 * 23 22 3 41 41 H 1.09002 * 111.19128 * 267.59929 * 24 23 22 42 42 H 1.08998 * 110.82071 * 143.77556 * 24 23 22 43 43 H 1.08993 * 110.48843 * 216.30489 * 25 24 23 44 44 H 1.09003 * 110.48028 * 93.66401 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 0.8419 5 6 3.5420 1.4442 0.1237 6 8 4.2217 1.9435 -0.7478 7 7 4.1299 0.8910 1.2030 8 6 5.5094 0.9740 1.3627 9 6 6.3375 1.0632 0.2544 10 6 7.7078 1.1392 0.4188 11 6 8.2687 1.1386 1.6892 12 6 7.4772 1.0516 2.7975 13 6 6.0793 0.9673 2.6575 14 6 5.2540 0.8777 3.7981 15 1 4.2432 1.2565 3.7642 16 6 5.7450 0.2977 4.9733 17 7 6.8701 -0.3702 4.9529 18 14 4.7944 0.4773 6.5713 19 1 3.5637 1.2719 6.3285 20 1 4.4225 -0.8674 7.0799 21 1 5.6411 1.1697 7.5759 22 7 1.6525 2.0976 -1.2517 23 6 0.8029 3.2915 -1.3331 24 6 1.0294 3.8603 -2.7533 25 6 1.4529 2.5944 -3.5337 26 6 2.0246 1.6789 -2.4737 27 8 2.7179 0.7086 -2.6943 28 1 -0.3632 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 3.5911 0.4350 1.8683 34 1 5.9120 1.0690 -0.7382 35 1 8.3480 1.2038 -0.4486 36 1 9.3410 1.2035 1.8010 37 1 7.9232 1.0478 3.7811 38 1 7.2106 -0.7718 5.7675 39 1 -0.2437 3.0199 -1.1951 40 1 1.1059 4.0218 -0.5827 41 1 1.8252 4.6052 -2.7571 42 1 0.1058 4.2761 -3.1560 43 1 2.2125 2.8399 -4.2758 44 1 0.5879 2.1329 -4.0102 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000415626380.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:15:09 Heat of formation + Delta-G solvation = -46.496108 kcal Electronic energy + Delta-G solvation = -27033.646936 eV Core-core repulsion = 23336.596561 eV Total energy + Delta-G solvation = -3697.050375 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -40.72592 -39.15901 -37.12961 -36.20523 -34.81968 -33.70880 -33.60323 -31.00927 -29.58738 -28.79704 -27.56759 -26.78509 -25.12086 -22.36748 -21.97859 -21.80369 -20.92607 -19.70680 -18.65374 -17.45081 -17.04142 -16.67133 -16.55071 -15.81801 -15.20015 -14.83396 -14.59511 -14.26381 -14.18514 -13.78558 -13.61936 -13.38713 -13.05655 -12.97971 -12.71901 -12.65189 -12.53122 -12.17399 -11.86811 -11.68637 -11.63714 -11.31437 -11.24291 -11.17265 -11.13918 -10.98465 -10.91234 -10.48373 -10.09850 -9.68699 -9.49070 -9.29261 -9.25129 -8.92837 -8.36846 -7.34196 -6.95443 -6.64976 -4.38972 2.62750 2.74426 2.88124 3.00832 3.03275 3.06458 3.22147 3.48278 3.87902 3.94465 4.35694 4.38533 4.64340 4.69277 4.88091 4.91870 5.01204 5.14686 5.26777 5.32310 5.39635 5.50432 5.56536 5.66201 5.70946 5.71782 5.86161 5.89716 6.02034 6.22040 6.39124 6.54247 6.60219 6.67194 6.96470 7.08702 7.20741 7.25159 7.33347 7.68346 7.76577 8.00782 8.13963 8.15507 8.37986 8.47798 8.58613 8.83699 8.87061 9.07272 10.17964 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.015297 B = 0.004195 C = 0.003576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1829.933090 B = 6673.163087 C = 7828.021919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.139 4.139 3 C 0.145 3.855 4 H 0.110 0.890 5 C 0.487 3.513 6 O -0.519 6.519 7 N -0.634 5.634 8 C 0.019 3.981 9 C -0.096 4.096 10 C -0.222 4.222 11 C -0.117 4.117 12 C -0.147 4.147 13 C 0.099 3.901 14 C -0.469 4.469 15 H 0.074 0.926 16 C 0.076 3.924 17 N -0.797 5.797 18 Si 0.908 3.092 19 H -0.262 1.262 20 H -0.275 1.275 21 H -0.273 1.273 22 N -0.604 5.604 23 C 0.105 3.895 24 C -0.130 4.130 25 C -0.154 4.154 26 C 0.525 3.475 27 O -0.515 6.515 28 H 0.055 0.945 29 H 0.053 0.947 30 H 0.057 0.943 31 H 0.085 0.915 32 H 0.081 0.919 33 H 0.402 0.598 34 H 0.121 0.879 35 H 0.089 0.911 36 H 0.087 0.913 37 H 0.122 0.878 38 H 0.279 0.721 39 H 0.071 0.929 40 H 0.077 0.923 41 H 0.083 0.917 42 H 0.087 0.913 43 H 0.099 0.901 44 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.162 5.109 -6.874 17.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.178 4.178 3 C 0.038 3.962 4 H 0.128 0.872 5 C 0.272 3.728 6 O -0.395 6.395 7 N -0.276 5.276 8 C -0.075 4.075 9 C -0.116 4.116 10 C -0.242 4.242 11 C -0.136 4.136 12 C -0.167 4.167 13 C 0.096 3.904 14 C -0.499 4.499 15 H 0.093 0.907 16 C -0.141 4.141 17 N -0.423 5.423 18 Si 0.733 3.267 19 H -0.186 1.186 20 H -0.200 1.200 21 H -0.198 1.198 22 N -0.339 5.339 23 C -0.018 4.018 24 C -0.168 4.168 25 C -0.194 4.194 26 C 0.313 3.687 27 O -0.389 6.389 28 H 0.074 0.926 29 H 0.072 0.928 30 H 0.076 0.924 31 H 0.103 0.897 32 H 0.099 0.901 33 H 0.238 0.762 34 H 0.138 0.862 35 H 0.107 0.893 36 H 0.105 0.895 37 H 0.140 0.860 38 H 0.090 0.910 39 H 0.089 0.911 40 H 0.095 0.905 41 H 0.101 0.899 42 H 0.106 0.894 43 H 0.118 0.882 44 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -14.174 4.782 -7.400 16.689 hybrid contribution -0.536 -0.125 1.296 1.408 sum -14.710 4.656 -6.104 16.593 Atomic orbital electron populations 1.21703 0.94897 1.01862 1.01621 1.21926 0.96751 0.94521 1.04554 1.20868 0.92943 0.95334 0.87043 0.87188 1.20662 0.89824 0.79410 0.82888 1.90619 1.64127 1.45439 1.39344 1.42822 1.07366 1.53907 1.23543 1.17783 0.80933 1.14827 0.93947 1.20932 0.92870 1.00087 0.97674 1.20360 0.94135 1.13908 0.95821 1.20488 0.97655 1.02042 0.93378 1.20915 0.93198 1.04889 0.97718 1.17399 0.92771 0.90481 0.89796 1.19312 0.99911 1.35494 0.95228 0.90745 1.25846 0.94904 0.92807 1.00519 1.69819 1.18643 1.24267 1.29565 0.86269 0.80417 0.78801 0.81237 1.18574 1.20017 1.19790 1.47875 1.51019 1.29632 1.05362 1.22110 0.94370 0.86905 0.98439 1.22598 1.02863 0.97242 0.94075 1.22300 1.02857 0.96080 0.98178 1.20680 0.79118 0.84977 0.83959 1.90720 1.36547 1.28168 1.83460 0.92605 0.92833 0.92380 0.89669 0.90076 0.76228 0.86172 0.89304 0.89464 0.86047 0.90958 0.91110 0.90486 0.89865 0.89432 0.88232 0.88273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.42 9.80 37.16 0.36 -1.06 16 2 C -0.14 -1.83 5.30 -26.73 -0.14 -1.97 16 3 C 0.15 2.10 2.68 -69.08 -0.19 1.91 16 4 H 0.11 1.29 8.07 -51.93 -0.42 0.87 16 5 C 0.49 9.68 6.73 -10.99 -0.07 9.61 16 6 O -0.52 -12.19 11.94 -9.07 -0.11 -12.30 16 7 N -0.63 -13.30 4.94 -9.48 -0.05 -13.35 16 8 C 0.02 0.47 6.44 -83.18 -0.54 -0.06 16 9 C -0.10 -2.45 8.75 -39.44 -0.35 -2.79 16 10 C -0.22 -5.47 10.04 -39.35 -0.39 -5.86 16 11 C -0.12 -2.87 9.97 -39.99 -0.40 -3.27 16 12 C -0.15 -3.86 8.61 -39.28 -0.34 -4.20 16 13 C 0.10 2.60 5.57 -106.65 -0.59 2.01 16 14 C -0.47 -11.71 8.35 -37.87 -0.32 -12.02 16 15 H 0.07 1.74 7.28 -52.49 -0.38 1.35 16 16 C 0.08 1.83 5.23 -17.33 -0.09 1.74 16 17 N -0.80 -20.05 10.87 55.55 0.60 -19.45 16 18 Si 0.91 17.84 29.58 -169.99 -5.03 12.81 16 19 H -0.26 -5.02 7.11 56.52 0.40 -4.62 16 20 H -0.27 -5.34 7.11 56.52 0.40 -4.93 16 21 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 22 N -0.60 -8.08 2.08 -166.05 -0.34 -8.42 16 23 C 0.10 0.93 7.31 -3.03 -0.02 0.91 16 24 C -0.13 -1.00 7.19 -25.00 -0.18 -1.18 16 25 C -0.15 -1.57 6.86 -26.74 -0.18 -1.76 16 26 C 0.53 8.12 6.68 -10.86 -0.07 8.05 16 27 O -0.51 -10.42 15.35 -9.07 -0.14 -10.56 16 28 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.05 0.52 7.75 -51.93 -0.40 0.12 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.08 1.37 6.62 -51.93 -0.34 1.02 16 32 H 0.08 1.02 7.34 -51.93 -0.38 0.64 16 33 H 0.40 7.52 6.95 -40.82 -0.28 7.24 16 34 H 0.12 3.17 5.71 -52.49 -0.30 2.87 16 35 H 0.09 1.98 8.06 -52.49 -0.42 1.56 16 36 H 0.09 1.91 8.06 -52.49 -0.42 1.49 16 37 H 0.12 3.24 6.22 -52.48 -0.33 2.92 16 38 H 0.28 6.41 8.30 -40.82 -0.34 6.08 16 39 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 40 H 0.08 0.66 8.14 -51.92 -0.42 0.23 16 41 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.09 0.43 8.14 -51.93 -0.42 0.00 16 43 H 0.10 1.03 8.14 -51.93 -0.42 0.60 16 44 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 357.04 15.07 5.38 5.38 Total: -1.00 -33.12 357.04 -9.39 -42.51 By element: Atomic # 1 Polarization: 19.54 SS G_CDS: -6.20 Total: 13.34 kcal Atomic # 6 Polarization: -6.44 SS G_CDS: -3.51 Total: -9.95 kcal Atomic # 7 Polarization: -41.44 SS G_CDS: 0.21 Total: -41.22 kcal Atomic # 8 Polarization: -22.62 SS G_CDS: -0.25 Total: -22.86 kcal Atomic # 14 Polarization: 17.84 SS G_CDS: -5.03 Total: 12.81 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -33.12 -9.39 -42.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000415626380.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.989 kcal (2) G-P(sol) polarization free energy of solvation -33.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds