Wall clock time and date at job start Tue Mar 31 2020 11:15:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53003 * 109.47373 * 2 1 4 4 H 1.09000 * 109.46688 * 55.00196 * 3 2 1 5 5 C 1.50693 * 109.46942 * 175.00328 * 3 2 1 6 6 O 1.21285 * 120.00108 * 120.00730 * 5 3 2 7 7 N 1.34780 * 120.00313 * 299.99800 * 5 3 2 8 8 C 1.39120 * 119.99927 * 184.44800 * 7 5 3 9 9 C 1.38641 * 120.28847 * 331.66519 * 8 7 5 10 10 C 1.38224 * 120.03747 * 180.30103 * 9 8 7 11 11 C 1.38868 * 120.61382 * 359.44670 * 10 9 8 12 12 C 1.36469 * 120.57429 * 0.55896 * 11 10 9 13 13 C 1.40738 * 119.94273 * 359.72223 * 12 11 10 14 14 C 1.41073 * 120.29545 * 180.02562 * 13 12 11 15 15 H 1.08002 * 119.99280 * 151.88129 * 14 13 12 16 16 C 1.39952 * 120.00390 * 331.87713 * 14 13 12 17 17 N 1.30857 * 120.00139 * 347.87318 * 16 14 13 18 18 Si 1.86799 * 120.00167 * 167.86744 * 16 14 13 19 19 H 1.48498 * 109.47023 * 0.02562 * 18 16 14 20 20 H 1.48498 * 109.47358 * 120.00178 * 18 16 14 21 21 H 1.48504 * 109.47332 * 240.00480 * 18 16 14 22 22 N 1.46499 * 109.47173 * 295.00638 * 3 2 1 23 23 C 1.46758 * 124.35462 * 119.72289 * 22 3 2 24 24 C 1.54658 * 105.38811 * 162.85172 * 23 22 3 25 25 C 1.54629 * 101.68046 * 25.76585 * 24 23 22 26 26 C 1.34424 * 124.34829 * 300.01939 * 22 3 2 27 27 O 1.21283 * 124.94132 * 0.39523 * 26 22 3 28 28 H 1.09001 * 109.46612 * 299.99501 * 1 2 3 29 29 H 1.09000 * 109.47223 * 59.99536 * 1 2 3 30 30 H 1.08999 * 109.47034 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46612 * 240.00499 * 2 1 3 32 32 H 1.09000 * 109.47223 * 120.00464 * 2 1 3 33 33 H 0.96998 * 119.99290 * 4.44907 * 7 5 3 34 34 H 1.07998 * 119.98136 * 0.02911 * 9 8 7 35 35 H 1.07996 * 119.69420 * 179.70881 * 10 9 8 36 36 H 1.08000 * 119.71459 * 180.30894 * 11 10 9 37 37 H 1.08003 * 120.02314 * 179.74590 * 12 11 10 38 38 H 0.96999 * 120.00283 * 179.97438 * 17 16 14 39 39 H 1.09006 * 110.24693 * 281.98489 * 23 22 3 40 40 H 1.09008 * 110.24459 * 43.97792 * 23 22 3 41 41 H 1.09002 * 111.19128 * 267.59929 * 24 23 22 42 42 H 1.08998 * 110.82071 * 143.77556 * 24 23 22 43 43 H 1.08993 * 110.48843 * 216.30489 * 25 24 23 44 44 H 1.09003 * 110.48028 * 93.66401 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 0.8419 5 6 3.5420 1.4442 0.1237 6 8 4.2217 1.9435 -0.7478 7 7 4.1299 0.8910 1.2030 8 6 5.5094 0.9740 1.3627 9 6 6.3375 1.0632 0.2544 10 6 7.7078 1.1392 0.4188 11 6 8.2687 1.1386 1.6892 12 6 7.4772 1.0516 2.7975 13 6 6.0793 0.9673 2.6575 14 6 5.2540 0.8777 3.7981 15 1 4.2432 1.2565 3.7642 16 6 5.7450 0.2977 4.9733 17 7 6.8701 -0.3702 4.9529 18 14 4.7944 0.4773 6.5713 19 1 3.5637 1.2719 6.3285 20 1 4.4225 -0.8674 7.0799 21 1 5.6411 1.1697 7.5759 22 7 1.6525 2.0976 -1.2517 23 6 0.8029 3.2915 -1.3331 24 6 1.0294 3.8603 -2.7533 25 6 1.4529 2.5944 -3.5337 26 6 2.0246 1.6789 -2.4737 27 8 2.7179 0.7086 -2.6943 28 1 -0.3632 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 3.5911 0.4350 1.8683 34 1 5.9120 1.0690 -0.7382 35 1 8.3480 1.2038 -0.4486 36 1 9.3410 1.2035 1.8010 37 1 7.9232 1.0478 3.7811 38 1 7.2106 -0.7718 5.7675 39 1 -0.2437 3.0199 -1.1951 40 1 1.1059 4.0218 -0.5827 41 1 1.8252 4.6052 -2.7571 42 1 0.1058 4.2761 -3.1560 43 1 2.2125 2.8399 -4.2758 44 1 0.5879 2.1329 -4.0102 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000415626380.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:15:08 Heat of formation + Delta-G solvation = -65.824015 kcal Electronic energy + Delta-G solvation = -27034.485057 eV Core-core repulsion = 23336.596561 eV Total energy + Delta-G solvation = -3697.888496 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.95862 -40.68217 -38.91833 -37.37951 -35.96651 -35.52792 -35.33843 -31.90765 -31.51470 -30.53985 -28.42161 -28.08041 -26.96188 -23.71827 -23.25229 -22.73668 -22.69203 -21.35866 -19.98970 -19.23365 -18.55324 -17.96229 -17.65452 -17.25229 -16.91553 -16.21196 -15.93217 -15.86360 -15.34116 -15.26687 -14.74399 -14.57550 -14.50950 -14.40247 -14.20851 -13.83438 -13.67398 -13.47240 -13.28259 -13.21020 -12.91897 -12.82534 -12.73105 -12.40575 -12.13977 -12.12137 -11.99567 -11.95639 -11.80737 -11.54514 -11.10165 -11.02169 -10.66228 -10.50568 -9.62799 -9.33904 -8.83982 -8.50841 -6.32295 0.81511 1.03263 1.43375 1.53369 1.57765 1.59500 1.81291 1.99022 2.22676 2.49386 2.77725 3.45403 3.65522 3.69088 3.76834 3.84410 3.96539 4.11048 4.21587 4.36142 4.45497 4.50574 4.61188 4.68607 4.70166 4.73714 4.80095 4.89429 5.03739 5.07213 5.09671 5.12920 5.20277 5.25732 5.29044 5.34121 5.42849 5.57413 5.77380 5.82628 6.12149 6.16367 6.22914 6.23970 6.63543 6.71908 6.93509 6.99855 7.26538 7.40340 8.37456 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.015297 B = 0.004195 C = 0.003576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1829.933090 B = 6673.163087 C = 7828.021919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.134 4.134 3 C 0.151 3.849 4 H 0.147 0.853 5 C 0.480 3.520 6 O -0.560 6.560 7 N -0.633 5.633 8 C 0.012 3.988 9 C -0.114 4.114 10 C -0.232 4.232 11 C -0.119 4.119 12 C -0.170 4.170 13 C 0.075 3.925 14 C -0.486 4.486 15 H 0.087 0.913 16 C 0.035 3.965 17 N -0.829 5.829 18 Si 0.986 3.014 19 H -0.250 1.250 20 H -0.268 1.268 21 H -0.272 1.272 22 N -0.605 5.605 23 C 0.096 3.904 24 C -0.119 4.119 25 C -0.148 4.148 26 C 0.504 3.496 27 O -0.579 6.579 28 H 0.079 0.921 29 H 0.057 0.943 30 H 0.063 0.937 31 H 0.048 0.952 32 H 0.082 0.918 33 H 0.412 0.588 34 H 0.106 0.894 35 H 0.107 0.893 36 H 0.112 0.888 37 H 0.112 0.888 38 H 0.287 0.713 39 H 0.107 0.893 40 H 0.083 0.917 41 H 0.073 0.927 42 H 0.129 0.871 43 H 0.092 0.908 44 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.570 6.363 -5.675 20.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.173 4.173 3 C 0.044 3.956 4 H 0.164 0.836 5 C 0.268 3.732 6 O -0.438 6.438 7 N -0.276 5.276 8 C -0.082 4.082 9 C -0.134 4.134 10 C -0.252 4.252 11 C -0.138 4.138 12 C -0.190 4.190 13 C 0.071 3.929 14 C -0.516 4.516 15 H 0.105 0.895 16 C -0.179 4.179 17 N -0.455 5.455 18 Si 0.807 3.193 19 H -0.173 1.173 20 H -0.193 1.193 21 H -0.197 1.197 22 N -0.338 5.338 23 C -0.025 4.025 24 C -0.156 4.156 25 C -0.188 4.188 26 C 0.294 3.706 27 O -0.458 6.458 28 H 0.098 0.902 29 H 0.076 0.924 30 H 0.082 0.918 31 H 0.067 0.933 32 H 0.100 0.900 33 H 0.249 0.751 34 H 0.124 0.876 35 H 0.125 0.875 36 H 0.130 0.870 37 H 0.130 0.870 38 H 0.098 0.902 39 H 0.125 0.875 40 H 0.102 0.898 41 H 0.092 0.908 42 H 0.147 0.853 43 H 0.111 0.889 44 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -17.633 6.070 -6.202 19.652 hybrid contribution 0.568 -0.526 0.886 1.177 sum -17.065 5.543 -5.316 18.713 Atomic orbital electron populations 1.21649 0.91665 1.02795 1.02969 1.21880 0.99393 0.93166 1.02850 1.20927 0.88615 0.97016 0.89076 0.83554 1.21776 0.92320 0.77735 0.81404 1.90592 1.65817 1.46951 1.40460 1.42844 1.06031 1.54354 1.24405 1.17929 0.82906 1.13940 0.93472 1.20994 0.93695 1.01403 0.97314 1.20600 0.94119 1.13773 0.96660 1.20704 0.98874 1.01380 0.92857 1.20977 0.93810 1.06495 0.97732 1.17750 0.93257 0.91124 0.90789 1.19603 1.00467 1.35927 0.95588 0.89498 1.26772 0.95714 0.91697 1.03750 1.69889 1.20120 1.24503 1.30969 0.85094 0.79129 0.79013 0.76109 1.17299 1.19305 1.19670 1.48127 1.50761 1.30586 1.04326 1.22526 0.95346 0.85289 0.99328 1.22659 1.04436 0.95594 0.92940 1.22349 1.03358 0.96295 0.96807 1.21710 0.78340 0.84743 0.85789 1.90678 1.39466 1.31053 1.84638 0.90188 0.92390 0.91767 0.93319 0.89951 0.75067 0.87638 0.87459 0.87029 0.87043 0.90207 0.87478 0.89837 0.90833 0.85293 0.88908 0.85535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.27 9.80 71.98 0.71 -1.57 16 2 C -0.13 -3.45 5.30 30.60 0.16 -3.29 16 3 C 0.15 4.20 2.68 44.24 0.12 4.32 16 4 H 0.15 2.99 8.07 -2.39 -0.02 2.97 16 5 C 0.48 19.53 6.73 87.65 0.59 20.12 16 6 O -0.56 -27.49 11.94 10.93 0.13 -27.36 16 7 N -0.63 -27.20 4.94 -302.29 -1.49 -28.69 16 8 C 0.01 0.64 6.44 38.88 0.25 0.89 16 9 C -0.11 -6.09 8.75 22.36 0.20 -5.90 16 10 C -0.23 -11.74 10.04 22.42 0.22 -11.51 16 11 C -0.12 -5.99 9.97 22.01 0.22 -5.77 16 12 C -0.17 -9.18 8.61 22.47 0.19 -8.99 16 13 C 0.07 4.01 5.57 -21.18 -0.12 3.90 16 14 C -0.49 -24.31 8.35 23.38 0.20 -24.12 16 15 H 0.09 3.99 7.28 -2.91 -0.02 3.96 16 16 C 0.04 1.68 5.23 85.25 0.45 2.12 16 17 N -0.83 -41.95 10.87 21.83 0.24 -41.71 16 18 Si 0.99 35.50 29.58 68.60 2.03 37.53 16 19 H -0.25 -8.45 7.11 99.48 0.71 -7.74 16 20 H -0.27 -9.33 7.11 99.48 0.71 -8.63 16 21 H -0.27 -9.70 7.11 99.48 0.71 -8.99 16 22 N -0.60 -15.34 2.08 -797.85 -1.66 -16.99 16 23 C 0.10 1.36 7.31 86.90 0.64 2.00 16 24 C -0.12 -1.44 7.19 31.71 0.23 -1.21 16 25 C -0.15 -2.79 6.86 30.59 0.21 -2.58 16 26 C 0.50 15.68 6.68 87.90 0.59 16.26 16 27 O -0.58 -24.81 15.35 10.94 0.17 -24.65 16 28 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.06 0.94 7.75 -2.39 -0.02 0.93 16 30 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.05 1.63 6.62 -2.39 -0.02 1.61 16 32 H 0.08 2.04 7.34 -2.39 -0.02 2.02 16 33 H 0.41 15.53 6.95 -92.71 -0.64 14.89 16 34 H 0.11 5.93 5.71 -2.91 -0.02 5.91 16 35 H 0.11 4.89 8.06 -2.91 -0.02 4.86 16 36 H 0.11 4.91 8.06 -2.91 -0.02 4.88 16 37 H 0.11 6.14 6.22 -2.91 -0.02 6.12 16 38 H 0.29 13.17 8.30 -92.71 -0.77 12.40 16 39 H 0.11 0.82 8.14 -2.38 -0.02 0.80 16 40 H 0.08 1.12 8.14 -2.38 -0.02 1.10 16 41 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 42 H 0.13 0.56 8.14 -2.39 -0.02 0.54 16 43 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 44 H 0.13 1.67 8.14 -2.39 -0.02 1.65 16 Total: -1.00 -77.64 357.04 4.64 -73.00 By element: Atomic # 1 Polarization: 43.82 SS G_CDS: 0.38 Total: 44.20 kcal Atomic # 6 Polarization: -20.17 SS G_CDS: 4.84 Total: -15.33 kcal Atomic # 7 Polarization: -84.48 SS G_CDS: -2.91 Total: -87.40 kcal Atomic # 8 Polarization: -52.30 SS G_CDS: 0.30 Total: -52.00 kcal Atomic # 14 Polarization: 35.50 SS G_CDS: 2.03 Total: 37.53 kcal Total: -77.64 4.64 -73.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000415626380.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.177 kcal (2) G-P(sol) polarization free energy of solvation -77.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds