Wall clock time and date at job start Tue Mar 31 2020 11:15:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52995 * 109.47439 * 2 1 4 4 H 1.08996 * 109.47296 * 305.00150 * 3 2 1 5 5 C 1.50700 * 109.47455 * 184.99719 * 3 2 1 6 6 O 1.21273 * 120.00635 * 240.00087 * 5 3 2 7 7 N 1.34778 * 119.99671 * 60.00202 * 5 3 2 8 8 C 1.39126 * 120.00396 * 175.81064 * 7 5 3 9 9 C 1.38650 * 120.28148 * 34.55856 * 8 7 5 10 10 C 1.38215 * 120.03580 * 179.97438 * 9 8 7 11 11 C 1.38875 * 120.61505 * 0.04578 * 10 9 8 12 12 C 1.36468 * 120.57374 * 359.97438 * 11 10 9 13 13 C 1.40735 * 119.94262 * 359.66351 * 12 11 10 14 14 C 1.41072 * 120.29783 * 180.34099 * 13 12 11 15 15 H 1.08000 * 119.99994 * 214.98234 * 14 13 12 16 16 C 1.39960 * 119.99887 * 34.98928 * 14 13 12 17 17 N 1.30844 * 120.00129 * 355.63075 * 16 14 13 18 18 Si 1.86803 * 119.99746 * 175.62958 * 16 14 13 19 19 H 1.48504 * 109.47265 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.46696 * 119.99853 * 18 16 14 21 21 H 1.48502 * 109.47205 * 239.99822 * 18 16 14 22 22 N 1.46498 * 109.47026 * 64.99904 * 3 2 1 23 23 C 1.46764 * 124.35179 * 240.00203 * 22 3 2 24 24 C 1.54482 * 105.47582 * 162.98372 * 23 22 3 25 25 C 1.54631 * 101.76345 * 25.41370 * 24 23 22 26 26 C 1.34747 * 124.29955 * 59.96222 * 22 3 2 27 27 O 1.21277 * 125.12328 * 0.42150 * 26 22 3 28 28 H 1.09002 * 109.47915 * 180.02562 * 1 2 3 29 29 H 1.09010 * 109.47138 * 299.99999 * 1 2 3 30 30 H 1.08998 * 109.47419 * 59.99598 * 1 2 3 31 31 H 1.09003 * 109.47174 * 239.99577 * 2 1 3 32 32 H 1.09007 * 109.47173 * 120.00308 * 2 1 3 33 33 H 0.97005 * 120.00051 * 355.80922 * 7 5 3 34 34 H 1.08001 * 119.98321 * 0.02562 * 9 8 7 35 35 H 1.07999 * 119.69597 * 180.02562 * 10 9 8 36 36 H 1.07996 * 119.70916 * 179.97438 * 11 10 9 37 37 H 1.07996 * 120.02440 * 180.02562 * 12 11 10 38 38 H 0.96997 * 120.00180 * 180.02562 * 17 16 14 39 39 H 1.08993 * 110.24619 * 43.97904 * 23 22 3 40 40 H 1.09004 * 110.24446 * 281.98136 * 23 22 3 41 41 H 1.09001 * 110.96847 * 267.29507 * 24 23 22 42 42 H 1.09000 * 110.96668 * 143.53536 * 24 23 22 43 43 H 1.09006 * 110.48159 * 93.88180 * 25 24 23 44 44 H 1.08999 * 110.48518 * 216.38756 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4442 -0.1238 6 8 4.2217 1.9434 0.7477 7 7 4.1297 0.8910 -1.2031 8 6 5.5099 0.9693 -1.3603 9 6 6.3433 0.9237 -0.2532 10 6 7.7138 1.0013 -0.4153 11 6 8.2702 1.1263 -1.6816 12 6 7.4733 1.1741 -2.7884 13 6 6.0752 1.0894 -2.6515 14 6 5.2446 1.1308 -3.7911 15 1 4.2802 1.6140 -3.7391 16 6 5.6705 0.5455 -4.9890 17 7 6.8723 0.0356 -5.0770 18 14 4.5231 0.4924 -6.4621 19 1 3.2309 1.1319 -6.1065 20 1 5.1410 1.2238 -7.5973 21 1 4.2857 -0.9202 -6.8540 22 7 1.6524 2.0974 1.2518 23 6 0.8076 3.2947 1.3329 24 6 0.3194 3.3563 2.7973 25 6 1.4367 2.5825 3.5349 26 6 2.0258 1.6766 2.4762 27 8 2.7302 0.7148 2.6987 28 1 -0.3635 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 3.5905 0.4383 -1.8704 34 1 5.9216 0.8265 0.7363 35 1 8.3579 0.9648 0.4508 36 1 9.3429 1.1862 -1.7913 37 1 7.9155 1.2710 -3.7689 38 1 7.1676 -0.3697 -5.9073 39 1 -0.0416 3.2038 0.6557 40 1 1.3898 4.1842 1.0917 41 1 -0.6419 2.8548 2.9094 42 1 0.2629 4.3873 3.1465 43 1 2.1930 3.2713 3.9115 44 1 1.0180 1.9937 4.3510 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000415626383.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:15:14 Heat of formation + Delta-G solvation = -48.429448 kcal Electronic energy + Delta-G solvation = -27034.153788 eV Core-core repulsion = 23337.019577 eV Total energy + Delta-G solvation = -3697.134211 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.70215 -39.13328 -37.14453 -36.22482 -34.79434 -33.69112 -33.57165 -31.03825 -29.56622 -28.78493 -27.58765 -26.77249 -25.10577 -22.37726 -21.98144 -21.77922 -20.89828 -19.70280 -18.66751 -17.49118 -17.06810 -16.87108 -16.08434 -15.74629 -15.38704 -15.08021 -14.38290 -14.29855 -14.16855 -13.83781 -13.62164 -13.28539 -13.04507 -12.99339 -12.77205 -12.65176 -12.55732 -12.17349 -11.88564 -11.71157 -11.65455 -11.27093 -11.21489 -11.18204 -11.16794 -10.98289 -10.87636 -10.45264 -10.06813 -9.74363 -9.49478 -9.31437 -9.21506 -8.92430 -8.42210 -7.26889 -6.92248 -6.60024 -4.42985 2.62958 2.78169 2.89383 2.95942 3.03972 3.07088 3.21128 3.45777 3.90747 3.94947 4.34091 4.37707 4.65696 4.67977 4.86606 4.92585 5.00637 5.13619 5.27056 5.32946 5.43062 5.51598 5.52624 5.63160 5.67290 5.70408 5.82922 5.88849 6.01490 6.21090 6.36758 6.54274 6.59276 6.63535 6.99682 7.10507 7.23747 7.23976 7.32703 7.70998 7.76846 8.02515 8.12854 8.15874 8.37501 8.46996 8.60456 8.85943 8.88613 9.07732 10.24712 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.015146 B = 0.004253 C = 0.003577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1848.243795 B = 6581.534968 C = 7825.857521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.138 4.138 3 C 0.145 3.855 4 H 0.111 0.889 5 C 0.489 3.511 6 O -0.520 6.520 7 N -0.636 5.636 8 C 0.026 3.974 9 C -0.093 4.093 10 C -0.215 4.215 11 C -0.120 4.120 12 C -0.140 4.140 13 C 0.095 3.905 14 C -0.470 4.470 15 H 0.074 0.926 16 C 0.073 3.927 17 N -0.808 5.808 18 Si 0.912 3.088 19 H -0.263 1.263 20 H -0.275 1.275 21 H -0.274 1.274 22 N -0.605 5.605 23 C 0.104 3.896 24 C -0.129 4.129 25 C -0.155 4.155 26 C 0.526 3.474 27 O -0.514 6.514 28 H 0.057 0.943 29 H 0.053 0.947 30 H 0.055 0.945 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.402 0.598 34 H 0.111 0.889 35 H 0.089 0.911 36 H 0.088 0.912 37 H 0.130 0.870 38 H 0.277 0.723 39 H 0.077 0.923 40 H 0.071 0.929 41 H 0.080 0.920 42 H 0.088 0.912 43 H 0.103 0.897 44 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.454 4.126 7.255 17.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.177 4.177 3 C 0.038 3.962 4 H 0.128 0.872 5 C 0.274 3.726 6 O -0.395 6.395 7 N -0.280 5.280 8 C -0.068 4.068 9 C -0.113 4.113 10 C -0.235 4.235 11 C -0.139 4.139 12 C -0.160 4.160 13 C 0.092 3.908 14 C -0.502 4.502 15 H 0.092 0.908 16 C -0.142 4.142 17 N -0.435 5.435 18 Si 0.737 3.263 19 H -0.187 1.187 20 H -0.200 1.200 21 H -0.200 1.200 22 N -0.340 5.340 23 C -0.019 4.019 24 C -0.167 4.167 25 C -0.195 4.195 26 C 0.313 3.687 27 O -0.388 6.388 28 H 0.076 0.924 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.099 0.901 32 H 0.103 0.897 33 H 0.237 0.763 34 H 0.129 0.871 35 H 0.108 0.892 36 H 0.107 0.893 37 H 0.148 0.852 38 H 0.089 0.911 39 H 0.096 0.904 40 H 0.089 0.911 41 H 0.099 0.901 42 H 0.107 0.893 43 H 0.121 0.879 44 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -14.459 3.829 7.771 16.856 hybrid contribution -0.609 -0.204 -1.203 1.363 sum -15.068 3.625 6.568 16.832 Atomic orbital electron populations 1.21701 0.94885 1.01856 1.01660 1.21913 0.96769 0.94509 1.04489 1.20854 0.92950 0.95314 0.87077 0.87159 1.20683 0.89832 0.79247 0.82869 1.90656 1.64406 1.45251 1.39214 1.42816 1.07243 1.54386 1.23512 1.17835 0.80946 1.13405 0.94564 1.20704 0.92909 1.00400 0.97264 1.20387 0.94068 1.13029 0.95986 1.20546 0.97790 1.02245 0.93347 1.21170 0.93226 1.03611 0.97975 1.17463 0.92775 0.90532 0.90069 1.19298 1.03387 1.33335 0.94138 0.90807 1.25840 0.95305 0.93456 0.99602 1.69771 1.16986 1.29529 1.27230 0.86209 0.80788 0.78615 0.80713 1.18672 1.19993 1.19970 1.47953 1.51688 1.29063 1.05323 1.22072 0.94140 0.87935 0.97717 1.22558 0.98368 1.01741 0.94019 1.22313 0.99439 0.99564 0.98202 1.20733 0.79380 0.84618 0.83945 1.90717 1.36329 1.28354 1.83383 0.92398 0.92781 0.92605 0.90083 0.89740 0.76295 0.87135 0.89227 0.89348 0.85196 0.91147 0.90435 0.91113 0.90121 0.89309 0.87920 0.88449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.42 9.80 37.15 0.36 -1.05 16 2 C -0.14 -1.81 5.30 -26.74 -0.14 -1.95 16 3 C 0.15 2.10 2.68 -69.09 -0.19 1.91 16 4 H 0.11 1.31 8.07 -51.93 -0.42 0.89 16 5 C 0.49 9.74 6.70 -10.98 -0.07 9.67 16 6 O -0.52 -12.30 12.29 -9.40 -0.12 -12.41 16 7 N -0.64 -13.33 4.86 -9.48 -0.05 -13.38 16 8 C 0.03 0.65 6.34 -83.17 -0.53 0.13 16 9 C -0.09 -2.36 8.69 -39.44 -0.34 -2.70 16 10 C -0.21 -5.24 10.04 -39.35 -0.39 -5.64 16 11 C -0.12 -2.94 9.97 -39.98 -0.40 -3.34 16 12 C -0.14 -3.66 8.61 -39.28 -0.34 -4.00 16 13 C 0.10 2.49 5.56 -106.65 -0.59 1.90 16 14 C -0.47 -11.80 8.22 -37.86 -0.31 -12.11 16 15 H 0.07 1.75 7.63 -52.49 -0.40 1.35 16 16 C 0.07 1.78 5.42 -17.33 -0.09 1.68 16 17 N -0.81 -20.42 10.62 55.55 0.59 -19.83 16 18 Si 0.91 17.98 29.56 -169.99 -5.03 12.95 16 19 H -0.26 -5.02 7.11 56.52 0.40 -4.62 16 20 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 21 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 22 N -0.61 -8.12 2.08 -166.07 -0.35 -8.47 16 23 C 0.10 0.94 7.30 -3.12 -0.02 0.91 16 24 C -0.13 -0.89 7.18 -25.10 -0.18 -1.07 16 25 C -0.15 -1.58 6.85 -26.74 -0.18 -1.77 16 26 C 0.53 8.14 6.69 -10.71 -0.07 8.06 16 27 O -0.51 -10.40 15.38 -9.40 -0.14 -10.54 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.05 0.52 7.75 -51.92 -0.40 0.12 16 30 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.08 1.01 7.34 -51.93 -0.38 0.63 16 32 H 0.08 1.35 6.65 -51.93 -0.35 1.00 16 33 H 0.40 7.47 7.33 -40.82 -0.30 7.17 16 34 H 0.11 2.89 6.20 -52.49 -0.33 2.57 16 35 H 0.09 1.98 8.06 -52.49 -0.42 1.55 16 36 H 0.09 1.92 8.06 -52.49 -0.42 1.50 16 37 H 0.13 3.49 6.16 -52.49 -0.32 3.17 16 38 H 0.28 6.43 8.30 -40.82 -0.34 6.09 16 39 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 43 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 44 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 358.13 15.07 5.40 5.40 Total: -1.00 -33.17 358.13 -9.44 -42.61 By element: Atomic # 1 Polarization: 19.29 SS G_CDS: -6.26 Total: 13.03 kcal Atomic # 6 Polarization: -5.87 SS G_CDS: -3.49 Total: -9.36 kcal Atomic # 7 Polarization: -41.87 SS G_CDS: 0.20 Total: -41.67 kcal Atomic # 8 Polarization: -22.70 SS G_CDS: -0.26 Total: -22.96 kcal Atomic # 14 Polarization: 17.98 SS G_CDS: -5.03 Total: 12.95 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -33.17 -9.44 -42.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000415626383.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.816 kcal (2) G-P(sol) polarization free energy of solvation -33.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds